Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20542
         (410 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK124538-1|BAC85878.1|  256|Homo sapiens protein ( Homo sapiens ...    33   0.37 
BC001731-1|AAH01731.2|  709|Homo sapiens cell cycle associated p...    32   0.85 
Z48042-1|CAA88096.1|  649|Homo sapiens GPI-anchored protein p137...    29   4.5  
AF495910-1|AAN60442.1| 8797|Homo sapiens nesprin-1 protein.            29   7.9  

>AK124538-1|BAC85878.1|  256|Homo sapiens protein ( Homo sapiens
           cDNA FLJ42547 fis, clone BRACE3004880. ).
          Length = 256

 Score = 33.1 bits (72), Expect = 0.37
 Identities = 22/74 (29%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
 Frame = -2

Query: 235 LISSTITLTGMSMTSFLFARRLLSMSLMVLAWS---MSSCSLDKLSTTFKGLSSASGTLS 65
           L S T++  G+S T+ LFA RL S+++   + S   +S+C L +++ +  GLSS + +  
Sbjct: 118 LSSMTLSACGLSSTT-LFACRLSSVTVSTCSLSSVTLSACGLSRVTLSACGLSSMTPSAC 176

Query: 64  GMEGARAASTNIVS 23
           G+     ++ ++ S
Sbjct: 177 GLSRVTLSACHLSS 190


>BC001731-1|AAH01731.2|  709|Homo sapiens cell cycle associated
           protein 1 protein.
          Length = 709

 Score = 31.9 bits (69), Expect = 0.85
 Identities = 18/54 (33%), Positives = 27/54 (50%)
 Frame = +3

Query: 42  AARAPSIPDKVPEAEDKPLNVVDNLSSEQELIDQANTIKDIDNSLRANKKEVID 203
           AA AP++ D+VPEAE +P        SE E  +  N     +    + +KE +D
Sbjct: 262 AASAPAVEDQVPEAEPEPAEEYTE-QSEVESTEYVNRQFMAETQFTSGEKEQVD 314


>Z48042-1|CAA88096.1|  649|Homo sapiens GPI-anchored protein p137
           protein.
          Length = 649

 Score = 29.5 bits (63), Expect = 4.5
 Identities = 17/54 (31%), Positives = 26/54 (48%)
 Frame = +3

Query: 42  AARAPSIPDKVPEAEDKPLNVVDNLSSEQELIDQANTIKDIDNSLRANKKEVID 203
           A  AP++ D+VPEAE +P        SE E  +  N     +    + +KE +D
Sbjct: 209 ADSAPAVEDQVPEAEPEPAEEYTE-QSEVESTEYVNRQFMAETQFTSGEKEQVD 261


>AF495910-1|AAN60442.1| 8797|Homo sapiens nesprin-1 protein.
          Length = 8797

 Score = 28.7 bits (61), Expect = 7.9
 Identities = 20/72 (27%), Positives = 34/72 (47%), Gaps = 4/72 (5%)
 Frame = +3

Query: 36   VLAARAPSIPDKVPEAEDKPLNVV--DNLSSEQELIDQANTIKDIDNSLR--ANKKEVID 203
            VL  R   IP  +P+AED+ L  +  D  + +  L +      ++ N LR    K + +D
Sbjct: 3552 VLHTREDVIPSGIPQAEDRALESLRQDWQAYQHRLSETRTQFNNVVNKLRLMEQKFQQVD 3611

Query: 204  IPVKVIVEEIKP 239
              +K   E++ P
Sbjct: 3612 EWLKTAEEKVSP 3623


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 48,968,889
Number of Sequences: 237096
Number of extensions: 879339
Number of successful extensions: 2854
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2692
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2848
length of database: 76,859,062
effective HSP length: 83
effective length of database: 57,180,094
effective search space used: 3030544982
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)