Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20542
         (410 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    23   1.8  
AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength rhodo...    23   1.8  
AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength rhodo...    23   1.8  
AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phospha...    23   1.8  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    21   5.4  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    21   7.2  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       21   7.2  
DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    20   9.5  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    20   9.5  

>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 22.6 bits (46), Expect = 1.8
 Identities = 8/27 (29%), Positives = 16/27 (59%)
 Frame = -2

Query: 142 WSMSSCSLDKLSTTFKGLSSASGTLSG 62
           W+M+  + D+ +   KGLS    +++G
Sbjct: 141 WTMTMIAFDRYNVIVKGLSGKPLSING 167


>AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 152

 Score = 22.6 bits (46), Expect = 1.8
 Identities = 8/27 (29%), Positives = 16/27 (59%)
 Frame = -2

Query: 142 WSMSSCSLDKLSTTFKGLSSASGTLSG 62
           W+M+  + D+ +   KGLS    +++G
Sbjct: 107 WTMTMIAFDRYNVIVKGLSGKPLSING 133


>AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 154

 Score = 22.6 bits (46), Expect = 1.8
 Identities = 8/27 (29%), Positives = 16/27 (59%)
 Frame = -2

Query: 142 WSMSSCSLDKLSTTFKGLSSASGTLSG 62
           W+M+  + D+ +   KGLS    +++G
Sbjct: 17  WTMTMIAFDRYNVIVKGLSGKPLSING 43


>AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phosphate
           dehydrogenase protein.
          Length = 363

 Score = 22.6 bits (46), Expect = 1.8
 Identities = 8/31 (25%), Positives = 17/31 (54%)
 Frame = +3

Query: 84  EDKPLNVVDNLSSEQELIDQANTIKDIDNSL 176
           E  P+ +++NL +  E ID+    ++   S+
Sbjct: 333 ETMPMELIENLRNHPEYIDETRNYQECKCSI 363


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 21.0 bits (42), Expect = 5.4
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = +3

Query: 186 KKEVIDIPVKVIVEEI 233
           KKE+ DI  +V VEEI
Sbjct: 570 KKEIYDILPEVDVEEI 585


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 20.6 bits (41), Expect = 7.2
 Identities = 7/26 (26%), Positives = 13/26 (50%)
 Frame = +2

Query: 329 PQHQEHETQNPEHHEDAEKNRFFRQK 406
           PQ  +H++Q  + H  A +     Q+
Sbjct: 181 PQQGQHQSQAQQQHLQAHEQHMMYQQ 206


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 20.6 bits (41), Expect = 7.2
 Identities = 7/22 (31%), Positives = 12/22 (54%)
 Frame = +2

Query: 332 QHQEHETQNPEHHEDAEKNRFF 397
           Q Q H+  + EH  + E+  +F
Sbjct: 103 QQQHHQDSSSEHASNQERFGYF 124


>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 20.2 bits (40), Expect = 9.5
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -3

Query: 117 ISYQRHLKVYLRP 79
           I + RH K++LRP
Sbjct: 219 ILHLRHTKIWLRP 231


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 20.2 bits (40), Expect = 9.5
 Identities = 14/63 (22%), Positives = 29/63 (46%)
 Frame = +3

Query: 105 VDNLSSEQELIDQANTIKDIDNSLRANKKEVIDIPVKVIVEEIKPSLKSD*KTLKCRMKM 284
           + N S+ + L+D      +  NSLR +  E+      V++   +P L++     +   K+
Sbjct: 307 IHNSSNARFLMDSMFDFAERVNSLRLSDAELGLFCSVVVIAADRPGLRNTELVERMHNKL 366

Query: 285 RKS 293
           R +
Sbjct: 367 RNA 369


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 90,787
Number of Sequences: 438
Number of extensions: 1670
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10379628
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)