Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20542
(410 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g62860.1 68414.m07098 pentatricopeptide (PPR) repeat-containi... 30 0.53
At1g51070.1 68414.m05741 basic helix-loop-helix (bHLH) family pr... 29 1.2
At1g01260.1 68414.m00043 basic helix-loop-helix (bHLH) family pr... 29 1.2
At5g65790.1 68418.m08278 myb family transcription factor (MYB68)... 28 2.8
At3g49530.1 68416.m05413 no apical meristem (NAM) family protein... 28 2.8
At1g03830.1 68414.m00364 guanylate-binding family protein contai... 28 2.8
At3g49690.1 68416.m05433 myb family transcription factor contain... 27 3.7
At2g23950.1 68415.m02860 leucine-rich repeat family protein / pr... 27 3.7
At1g11670.1 68414.m01340 MATE efflux family protein similar to r... 27 3.7
At5g01220.1 68418.m00027 UDP-sulfoquinovose:DAG sulfoquinovosylt... 27 4.9
At3g28600.1 68416.m03570 AAA-type ATPase family protein contains... 27 4.9
At3g06720.2 68416.m00797 importin alpha-1 subunit, putative (IMP... 27 4.9
At3g06720.1 68416.m00796 importin alpha-1 subunit, putative (IMP... 27 4.9
At2g45560.2 68415.m05666 cytochrome P450 family protein 27 6.5
At2g45560.1 68415.m05665 cytochrome P450 family protein 27 6.5
At5g52860.1 68418.m06561 ABC transporter family protein 26 8.6
At4g25750.1 68417.m03707 ABC transporter family protein Bactroce... 26 8.6
At3g50580.1 68416.m05532 proline-rich family protein contains pr... 26 8.6
At3g20300.1 68416.m02572 expressed protein 26 8.6
>At1g62860.1 68414.m07098 pentatricopeptide (PPR) repeat-containing
protein low similarity to fertility restorer [Petunia x
hybrida] GI:22128587; contains Pfam profile PF01535: PPR
repeat
Length = 534
Score = 30.3 bits (65), Expect = 0.53
Identities = 23/77 (29%), Positives = 33/77 (42%), Gaps = 2/77 (2%)
Frame = -2
Query: 280 FIRHFNVF*SLFNDGLISSTITLTGMSMTSFLFARRLLSMSLMVLAWSMSSCSLD--KLS 107
F+R +++ + G+I ST+T M + F RL MV + CS D S
Sbjct: 372 FLRAEDIYLEMLCKGIIPSTVTYNSM-VDGFCKQNRLEEARQMVDSMVSEGCSPDVVTFS 430
Query: 106 TTFKGLSSASGTLSGME 56
T KG A G+E
Sbjct: 431 TLIKGYCKAGRVDDGLE 447
>At1g51070.1 68414.m05741 basic helix-loop-helix (bHLH) family
protein similar to bHLH transcription factor GI:3757520
from [Arabidopsis thaliana]
Length = 226
Score = 29.1 bits (62), Expect = 1.2
Identities = 22/96 (22%), Positives = 48/96 (50%)
Frame = +3
Query: 63 PDKVPEAEDKPLNVVDNLSSEQELIDQANTIKDIDNSLRANKKEVIDIPVKVIVEEIKPS 242
P + P+ DK + D + + D+A +KD+++SL+ KE+ D K + + K
Sbjct: 95 PGRTPKT-DKVAIINDAIRMVNQARDEAQKLKDLNSSLQEKIKELKD--EKNELRDEKQK 151
Query: 243 LKSD*KTLKCRMKMRKSRGL*SI*EIPGPRSIKSTK 350
LK + + + ++K K++ +P P+++ +
Sbjct: 152 LKVEKERIDQQLKAIKTQPQPQPCFLPNPQTLSQAQ 187
>At1g01260.1 68414.m00043 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 590
Score = 29.1 bits (62), Expect = 1.2
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +2
Query: 308 DLRNPGPPQHQEHETQNPEHHEDAEKNRFFRQK 406
DL N G QH +H Q + +++R FR+K
Sbjct: 267 DLHNSGFLQHHQHHQQQQQQPPQQQQHRQFREK 299
>At5g65790.1 68418.m08278 myb family transcription factor (MYB68)
identical to putative transcription factor (MYB68)
GI:3941493 from [Arabidopsis thaliana]; contains Pfam
profile: PF00249 myb-like DNA-binding domain
Length = 374
Score = 27.9 bits (59), Expect = 2.8
Identities = 10/34 (29%), Positives = 19/34 (55%)
Frame = +2
Query: 293 KRPLVDLRNPGPPQHQEHETQNPEHHEDAEKNRF 394
++PL+ L+N + ++ T HH+D+ N F
Sbjct: 202 QKPLITLKNMVKIEEEQERTNPDHHHQDSVTNPF 235
>At3g49530.1 68416.m05413 no apical meristem (NAM) family protein
contains Pfam PF02365: No apical meristem (NAM) domain;
similar to NAC2 - Arabidopsis thaliana, EMBL:AF201456
Length = 469
Score = 27.9 bits (59), Expect = 2.8
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +2
Query: 26 NYIRARRTRTFHPGQGPRGRR 88
N I +RT FH G+ PRG R
Sbjct: 111 NIIGVKRTLVFHAGRAPRGTR 131
>At1g03830.1 68414.m00364 guanylate-binding family protein contains
Pfam domains PF02263: Guanylate-binding protein,
N-terminal domain and PF02841: Guanylate-binding
protein, C-terminal domain
Length = 991
Score = 27.9 bits (59), Expect = 2.8
Identities = 17/64 (26%), Positives = 33/64 (51%)
Frame = +3
Query: 102 VVDNLSSEQELIDQANTIKDIDNSLRANKKEVIDIPVKVIVEEIKPSLKSD*KTLKCRMK 281
V + +++ +E + QA+T +D LRA V+D K+I E+ + + R +
Sbjct: 536 VTEKIAAMEEKLKQASTTED---GLRAEFSRVLDEKEKIITEKAAKLATLEQQLASTRAE 592
Query: 282 MRKS 293
++KS
Sbjct: 593 LKKS 596
>At3g49690.1 68416.m05433 myb family transcription factor contains
PFAM profile: myb DNA binding domain PF00249
Length = 310
Score = 27.5 bits (58), Expect = 3.7
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +2
Query: 311 LRNPGPPQHQEHETQNPEHHEDAEKNRF 394
++N + QE E NP HH+D+ N F
Sbjct: 194 IKNMVKIEDQELEKTNPHHHQDSMTNAF 221
>At2g23950.1 68415.m02860 leucine-rich repeat family protein /
protein kinase family protein contains Pfam domains
PF00560: Leucine Rich Repeat and PF00069: Protein kinase
domain
Length = 634
Score = 27.5 bits (58), Expect = 3.7
Identities = 16/32 (50%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Frame = -2
Query: 145 AWSMSSCSLDKLSTTFKGLS-SASGTLSGMEG 53
+W+M SCS D L S S SGTLSG G
Sbjct: 64 SWTMISCSSDNLVIGLGAPSQSLSGTLSGSIG 95
>At1g11670.1 68414.m01340 MATE efflux family protein similar to
ripening regulated protein DDTFR18 [Lycopersicon
esculentum] GI:12231296; contains Pfam profile PF01554:
Uncharacterized membrane protein family; EST gb|W43487
comes from this gene
Length = 503
Score = 27.5 bits (58), Expect = 3.7
Identities = 19/49 (38%), Positives = 25/49 (51%)
Frame = -2
Query: 208 GMSMTSFLFARRLLSMSLMVLAWSMSSCSLDKLSTTFKGLSSASGTLSG 62
GMSM + +FA RL SM L + S ++ L G+ SA TL G
Sbjct: 70 GMSMLTRIFAGRLGSMQLAAASLGNSGFNMFTLGLML-GMGSAVETLCG 117
>At5g01220.1 68418.m00027 UDP-sulfoquinovose:DAG
sulfoquinovosyltransferase / sulfolipid synthase (SQD2)
identical to GI:20302857
Length = 510
Score = 27.1 bits (57), Expect = 4.9
Identities = 12/40 (30%), Positives = 22/40 (55%)
Frame = +3
Query: 36 VLAARAPSIPDKVPEAEDKPLNVVDNLSSEQELIDQANTI 155
V+AARA IPD +PE ++ + N ++ + + T+
Sbjct: 403 VVAARAGGIPDIIPEDQEGKTGFLFNPGDVEDCVTKLRTL 442
>At3g28600.1 68416.m03570 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 475
Score = 27.1 bits (57), Expect = 4.9
Identities = 13/44 (29%), Positives = 22/44 (50%)
Frame = +3
Query: 60 IPDKVPEAEDKPLNVVDNLSSEQELIDQANTIKDIDNSLRANKK 191
I + E + P +V +NL + ID ++KD+ +L KK
Sbjct: 405 IESLLKETKIAPADVAENLMKKNTEIDADGSLKDLIQALEGKKK 448
>At3g06720.2 68416.m00797 importin alpha-1 subunit, putative (IMPA1)
similar to importin alpha-1 subunit (Karyopherin alpha-1
subunit, KAP alpha) [Arabidopsis thaliana]
SWISS-PROT:Q96321
Length = 532
Score = 27.1 bits (57), Expect = 4.9
Identities = 16/51 (31%), Positives = 28/51 (54%)
Frame = +3
Query: 69 KVPEAEDKPLNVVDNLSSEQELIDQANTIKDIDNSLRANKKEVIDIPVKVI 221
KV EAE K L +++ +LID A ++ I+N + E+ + VK++
Sbjct: 441 KVGEAE-KNLGHTGDMNYYAQLIDDAEGLEKIENLQSHDNNEIYEKAVKIL 490
>At3g06720.1 68416.m00796 importin alpha-1 subunit, putative (IMPA1)
similar to importin alpha-1 subunit (Karyopherin alpha-1
subunit, KAP alpha) [Arabidopsis thaliana]
SWISS-PROT:Q96321
Length = 532
Score = 27.1 bits (57), Expect = 4.9
Identities = 16/51 (31%), Positives = 28/51 (54%)
Frame = +3
Query: 69 KVPEAEDKPLNVVDNLSSEQELIDQANTIKDIDNSLRANKKEVIDIPVKVI 221
KV EAE K L +++ +LID A ++ I+N + E+ + VK++
Sbjct: 441 KVGEAE-KNLGHTGDMNYYAQLIDDAEGLEKIENLQSHDNNEIYEKAVKIL 490
>At2g45560.2 68415.m05666 cytochrome P450 family protein
Length = 322
Score = 26.6 bits (56), Expect = 6.5
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = -1
Query: 374 LRGVQDSVFRALDAAGARDFLN 309
+ GVQD+V +DAAG D N
Sbjct: 208 INGVQDTVISVMDAAGTPDAAN 229
>At2g45560.1 68415.m05665 cytochrome P450 family protein
Length = 512
Score = 26.6 bits (56), Expect = 6.5
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = -1
Query: 374 LRGVQDSVFRALDAAGARDFLN 309
+ GVQD+V +DAAG D N
Sbjct: 208 INGVQDTVISVMDAAGTPDAAN 229
>At5g52860.1 68418.m06561 ABC transporter family protein
Length = 589
Score = 26.2 bits (55), Expect = 8.6
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = -2
Query: 388 IFFSIFVVFRILCFVLLMLRGPG 320
+ FV++R+LCF+ L+ R G
Sbjct: 564 VLLGFFVLYRVLCFLALLRRVSG 586
>At4g25750.1 68417.m03707 ABC transporter family protein Bactrocera
tryoni membrane transporter (white) gene, PID:g3676298
Length = 577
Score = 26.2 bits (55), Expect = 8.6
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = -2
Query: 388 IFFSIFVVFRILCFVLLMLRGPG 320
+ FV++R+LCF++L+ R G
Sbjct: 552 MLLGFFVLYRVLCFLVLLKRVSG 574
>At3g50580.1 68416.m05532 proline-rich family protein contains
proline-rich extensin domains, INTERPRO:IPR002965
Length = 265
Score = 26.2 bits (55), Expect = 8.6
Identities = 8/18 (44%), Positives = 9/18 (50%)
Frame = +2
Query: 320 PGPPQHQEHETQNPEHHE 373
P PP H NP HH+
Sbjct: 158 PPPPSHHSSSPSNPPHHQ 175
>At3g20300.1 68416.m02572 expressed protein
Length = 452
Score = 26.2 bits (55), Expect = 8.6
Identities = 27/117 (23%), Positives = 49/117 (41%), Gaps = 7/117 (5%)
Frame = -2
Query: 406 FLTEETIFFSIFVVFRILCFVLLMLRGPGIS*ID*RPLDF-------LIFIRHFNVF*SL 248
+L T+ F + V+FR++C L +LR + + D L RH +
Sbjct: 204 WLYRTTVIFLVCVLFRLICH-LQILRLQDFAQVFQMDSDVGSILSEHLRIRRHLRIISHR 262
Query: 247 FNDGLISSTITLTGMSMTSFLFARRLLSMSLMVLAWSMSSCSLDKLSTTFKGLSSAS 77
+ ++ S I +TG S L + + + A ++ CS+ ++ L SAS
Sbjct: 263 YRTFILLSLILVTGSQFYSLLITTKAYAELNIYRAGELALCSMTLVTALLILLRSAS 319
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,197,969
Number of Sequences: 28952
Number of extensions: 120708
Number of successful extensions: 552
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 536
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 550
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 615542944
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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