Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20541
(768 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_0579 + 18949742-18949909,18951483-18951563,18951762-18952103 31 1.0
08_01_0771 - 7464383-7464655,7464901-7464915,7465098-7465418 29 3.1
02_04_0207 + 20933319-20933427,20933503-20933701,20933785-209339... 29 4.1
12_02_0133 - 14057469-14057497,14057516-14057581,14057770-140583... 29 5.4
08_01_0694 - 6136025-6136749,6137425-6137971 29 5.4
06_03_0345 + 19758188-19758382,19759857-19759952,19760061-197601... 29 5.4
04_03_0809 + 19896801-19897170,19897265-19897513,19897850-198979... 29 5.4
11_06_0523 - 24570683-24571126,24571210-24571808,24573300-24573600 28 7.1
02_01_0733 - 5477110-5477421,5478146-5478166 28 7.1
11_06_0459 + 23830204-23830350,23830419-23830592,23830738-238308... 28 9.4
11_06_0276 - 21826458-21826640,21826716-21826787,21826869-218269... 28 9.4
06_01_0185 - 1437693-1437834,1437969-1438078,1438214-1438264,143... 28 9.4
04_03_0152 + 11913917-11914328,11914391-11914507,11915424-11915587 28 9.4
01_06_0881 + 32692345-32692497,32693167-32693286,32693382-326934... 28 9.4
01_03_0280 - 14546334-14546815,14546894-14547560,14550333-145517... 28 9.4
>08_02_0579 + 18949742-18949909,18951483-18951563,18951762-18952103
Length = 196
Score = 31.1 bits (67), Expect = 1.0
Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = +1
Query: 382 CGDSTCIERGLFCNGEKDCGD-GSDENSCDIDND 480
CGD+ C G+FC G D S+++S D+ +D
Sbjct: 157 CGDTGCFADGIFCPGNGDSDPAASNDSSVDMHSD 190
>08_01_0771 - 7464383-7464655,7464901-7464915,7465098-7465418
Length = 202
Score = 29.5 bits (63), Expect = 3.1
Identities = 19/47 (40%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
Frame = +1
Query: 421 NGEKDCGDGSD--ENSCD-IDNDPNRAPPCDSCSVSFLTASAPRTAQ 552
N E+ GDG + CD I N APP ++CS + A APR A+
Sbjct: 3 NCERVAGDGGNGGHRECDEIGNQSRGAPPMEACSSA--GACAPRQAK 47
>02_04_0207 +
20933319-20933427,20933503-20933701,20933785-20933931,
20934683-20934764,20935542-20935697,20935948-20936121,
20936278-20936349,20937012-20937083,20937322-20937440,
20937540-20937625,20937747-20937799,20938076-20938153
Length = 448
Score = 29.1 bits (62), Expect = 4.1
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = +3
Query: 540 EDGTVIPGDLPARDVPQMITITFDDA 617
EDG + GD R VP ++T FDDA
Sbjct: 48 EDGQLGHGDAEDRPVPTVLTAAFDDA 73
>12_02_0133 - 14057469-14057497,14057516-14057581,14057770-14058363,
14058450-14058570,14058926-14059320,14059410-14059534,
14059646-14059876,14060012-14060484,14060587-14060693,
14060842-14061172,14061222-14061250,14061345-14061901,
14062170-14062255,14062344-14062406,14062646-14063001,
14063101-14063356
Length = 1272
Score = 28.7 bits (61), Expect = 5.4
Identities = 14/39 (35%), Positives = 23/39 (58%)
Frame = +1
Query: 403 ERGLFCNGEKDCGDGSDENSCDIDNDPNRAPPCDSCSVS 519
++ L C+G++D D S+ +C+ D N P +CSVS
Sbjct: 1002 QQKLSCSGDEDTKDSSNSIACEAIIDVNTVPV--TCSVS 1038
>08_01_0694 - 6136025-6136749,6137425-6137971
Length = 423
Score = 28.7 bits (61), Expect = 5.4
Identities = 12/39 (30%), Positives = 25/39 (64%)
Frame = -1
Query: 534 RSSQEGHTAGIAWRSSIWVVVNITRIFIRSIATVLFAVT 418
++ ++G +G AWRS++W +V + IA +++A+T
Sbjct: 247 KAEEDGGMSGSAWRSTLWSIVGRVKWHGIGIA-LIYAIT 284
>06_03_0345 +
19758188-19758382,19759857-19759952,19760061-19760144,
19760504-19760573,19760934-19761838,19763661-19764287
Length = 658
Score = 28.7 bits (61), Expect = 5.4
Identities = 15/58 (25%), Positives = 25/58 (43%)
Frame = +1
Query: 310 KNKERKIKPLLYTEEPLCQDGFLACGDSTCIERGLFCNGEKDCGDGSDENSCDIDNDP 483
+ +ER+ L E +G ++C ST G+K+ DG D+ D +P
Sbjct: 441 RGEERRGVDKLRCHEEFVTEGHISCSVSTDDSDSSTSKGDKNAKDGKDKGDKDKSEEP 498
>04_03_0809 +
19896801-19897170,19897265-19897513,19897850-19897900,
19898007-19898267,19898427-19898479,19898746-19898887,
19898972-19899226,19899616-19900640
Length = 801
Score = 28.7 bits (61), Expect = 5.4
Identities = 16/62 (25%), Positives = 31/62 (50%)
Frame = -1
Query: 465 TRIFIRSIATVLFAVTEKTAFNASRVAASEEAILTEWFFSVQERLYFTLLVLELTIFHSI 286
T++ + S+A +LF + F +V + I++ WF + + L+V E+TI +
Sbjct: 224 TQVVLISVA-ILFMLFSVQRFGTDKVGYTFAPIISVWFLLIAGIGLYNLVVHEITILKAF 282
Query: 285 FP 280
P
Sbjct: 283 NP 284
>11_06_0523 - 24570683-24571126,24571210-24571808,24573300-24573600
Length = 447
Score = 28.3 bits (60), Expect = 7.1
Identities = 16/61 (26%), Positives = 32/61 (52%)
Frame = -2
Query: 422 LQKRPRSMQVESPQARKPS*QSGSSVYKRGFILRSLFLSLQFFTASFQSQVCFSISRTNR 243
L + ++ +P +RK S + +++YKR + RSL L + + F V + R+++
Sbjct: 325 LDRLELDLRHNAPCSRKRSAVAMANLYKRDYSSRSLLLQFR-YKLDFDKSVDLFVHRSSK 383
Query: 242 P 240
P
Sbjct: 384 P 384
>02_01_0733 - 5477110-5477421,5478146-5478166
Length = 110
Score = 28.3 bits (60), Expect = 7.1
Identities = 20/62 (32%), Positives = 27/62 (43%), Gaps = 2/62 (3%)
Frame = +1
Query: 280 WKDAVKNCKLKNKERKIKPLLYTEEPLCQDGFLACGDSTCIERGLFC--NGEKDCGDGSD 453
W +K+ K + R+ L Y C D LA GD TC R L +G D DG
Sbjct: 34 WTVRLKHTKGRRPRRERAVLRYGWHRFCADNGLAVGD-TCFFRALRSAGSGAGDVDDGDG 92
Query: 454 EN 459
++
Sbjct: 93 DH 94
>11_06_0459 +
23830204-23830350,23830419-23830592,23830738-23830865,
23830947-23831065,23831136-23831217,23831303-23831441,
23831624-23831778,23831852-23832149,23832325-23832453,
23832529-23832711,23832840-23832899,23832973-23833101,
23833177-23833359,23833446-23833490,23833576-23833665,
23833806-23833892,23833974-23834045,23834120-23834302
Length = 800
Score = 27.9 bits (59), Expect = 9.4
Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Frame = -3
Query: 544 SSEQKQSG-RTHCRNRMAELYLGRCQYHKNFHQIHRHSPFRRYRKDRVQ 401
SS K +G T C + ++ GRC Y+ ++H + R R R++
Sbjct: 744 SSNTKVTGDSTSCNSSKEDINKGRCNYNIENIKVHMNEQSSRCRSTRIR 792
>11_06_0276 -
21826458-21826640,21826716-21826787,21826869-21826955,
21827096-21827185,21827271-21827315,21827402-21827584,
21827660-21827788,21827862-21827921,21828050-21828232,
21828308-21828436,21828612-21828909,21828983-21829137,
21829320-21829458,21829544-21829625,21829696-21829814,
21829896-21830023,21830169-21830342,21830411-21830557
Length = 800
Score = 27.9 bits (59), Expect = 9.4
Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Frame = -3
Query: 544 SSEQKQSG-RTHCRNRMAELYLGRCQYHKNFHQIHRHSPFRRYRKDRVQ 401
SS K +G T C + ++ GRC Y+ ++H + R R R++
Sbjct: 744 SSNTKVTGDSTSCNSSKEDINKGRCNYNIENIKVHMNEQSSRCRSTRIR 792
>06_01_0185 -
1437693-1437834,1437969-1438078,1438214-1438264,
1438877-1439122,1439244-1439315,1439614-1439648,
1439755-1439845,1440546-1440610,1440733-1440813,
1441020-1441137,1441535-1441627,1441865-1441997,
1442471-1442503,1443264-1443343,1443444-1443549,
1443621-1443795,1443884-1443980,1444819-1445251,
1445329-1445459,1446052-1446341,1446429-1447002
Length = 1051
Score = 27.9 bits (59), Expect = 9.4
Identities = 17/41 (41%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
Frame = +1
Query: 436 CGD--GSDENSCDIDNDPNRAPPCDSCSVSFLTASAPRTAQ 552
CG G E+S D D +A CD+ V+ +++SAPRTA+
Sbjct: 378 CGQEPGEPESSPDGDALGEKAH-CDATVVALVSSSAPRTAE 417
>04_03_0152 + 11913917-11914328,11914391-11914507,11915424-11915587
Length = 230
Score = 27.9 bits (59), Expect = 9.4
Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 4/52 (7%)
Frame = +3
Query: 72 DGGDKLTRRQRKMKAWNKNY-ARTRTPANGSGW---WPARATTVATSSSVLP 215
D G T+R RK +AW ++ A P G W + + + ++ S+ LP
Sbjct: 60 DDGSYRTKRSRKYEAWRVDFDAGILVPVKGFNWRALFISMSRAISVSAETLP 111
>01_06_0881 +
32692345-32692497,32693167-32693286,32693382-32693474,
32694197-32694283,32696052-32696063,32696553-32696625,
32697073-32697182,32697608-32697658,32698154-32698242,
32698518-32698599,32698680-32698793,32699015-32699094,
32699749-32699884,32700210-32700280,32700363-32700457,
32700467-32700597,32701009-32701398
Length = 628
Score = 27.9 bits (59), Expect = 9.4
Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 3/45 (6%)
Frame = +1
Query: 388 DSTCIERGLFCNGE-KDCGDGSD--ENSCDIDNDPNRAPPCDSCS 513
D C+ G FCNG GD S+ +N+ + D +R P S S
Sbjct: 444 DEHCLYAGAFCNGHGYGTGDSSNKHQNANSVPFDDSRTPSDQSLS 488
>01_03_0280 -
14546334-14546815,14546894-14547560,14550333-14551754,
14552831-14553127
Length = 955
Score = 27.9 bits (59), Expect = 9.4
Identities = 17/60 (28%), Positives = 26/60 (43%)
Frame = +1
Query: 391 STCIERGLFCNGEKDCGDGSDENSCDIDNDPNRAPPCDSCSVSFLTASAPRTAQ*SPATY 570
S+C G + D DE++C +D D + PC+ + F S SPAT+
Sbjct: 526 SSCASTGQVGSQSMDAMQTQDESTCPVD-DITQRTPCE-LHIPFKNLSIKMADSDSPATW 583
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,179,655
Number of Sequences: 37544
Number of extensions: 482157
Number of successful extensions: 1586
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1531
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1585
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2063219900
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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