Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20541
(768 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_58590| Best HMM Match : Polysacc_deac_1 (HMM E-Value=2.6e-08) 107 1e-23
SB_641| Best HMM Match : No HMM Matches (HMM E-Value=.) 80 2e-15
SB_4485| Best HMM Match : No HMM Matches (HMM E-Value=.) 75 5e-14
SB_48688| Best HMM Match : Ldl_recept_a (HMM E-Value=7.8e-26) 51 1e-06
SB_30577| Best HMM Match : Ldl_recept_a (HMM E-Value=2.8e-25) 51 1e-06
SB_6273| Best HMM Match : MAM (HMM E-Value=0) 48 6e-06
SB_50311| Best HMM Match : Ldl_recept_a (HMM E-Value=3.4e-20) 48 8e-06
SB_47789| Best HMM Match : Ldl_recept_a (HMM E-Value=4.2e-34) 48 1e-05
SB_13477| Best HMM Match : Ldl_recept_a (HMM E-Value=0) 46 3e-05
SB_45709| Best HMM Match : No HMM Matches (HMM E-Value=.) 46 3e-05
SB_27746| Best HMM Match : MAM (HMM E-Value=1.4013e-45) 45 8e-05
SB_29580| Best HMM Match : Ldl_recept_a (HMM E-Value=4.2e-38) 44 1e-04
SB_56441| Best HMM Match : No HMM Matches (HMM E-Value=.) 44 1e-04
SB_10498| Best HMM Match : Ldl_recept_a (HMM E-Value=2.7e-07) 44 1e-04
SB_47667| Best HMM Match : Ldl_recept_a (HMM E-Value=0) 44 2e-04
SB_5319| Best HMM Match : Ldl_recept_a (HMM E-Value=7.56701e-44) 43 2e-04
SB_40871| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 4e-04
SB_47409| Best HMM Match : Ldl_recept_a (HMM E-Value=1.2e-17) 42 5e-04
SB_53569| Best HMM Match : EGF_CA (HMM E-Value=0) 42 7e-04
SB_4238| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 7e-04
SB_21487| Best HMM Match : MAM (HMM E-Value=0) 41 0.001
SB_51630| Best HMM Match : Fz (HMM E-Value=3.3e-34) 41 0.001
SB_23898| Best HMM Match : Ldl_recept_a (HMM E-Value=1.4013e-45) 40 0.002
SB_50657| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.002
SB_45605| Best HMM Match : MAM (HMM E-Value=2.1e-16) 40 0.002
SB_31927| Best HMM Match : Ldl_recept_a (HMM E-Value=2.3e-27) 40 0.002
SB_13199| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.002
SB_35350| Best HMM Match : No HMM Matches (HMM E-Value=.) 39 0.004
SB_51898| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.007
SB_33423| Best HMM Match : Ldl_recept_a (HMM E-Value=7.8e-22) 38 0.012
SB_19614| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.016
SB_35576| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.016
SB_31087| Best HMM Match : Ldl_recept_a (HMM E-Value=4.2e-32) 37 0.016
SB_43556| Best HMM Match : Ldl_recept_a (HMM E-Value=2.7e-11) 36 0.027
SB_55149| Best HMM Match : Ldl_recept_a (HMM E-Value=2.6e-23) 36 0.027
SB_43823| Best HMM Match : MAM (HMM E-Value=0) 36 0.027
SB_18178| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.048
SB_26126| Best HMM Match : Ldl_recept_b (HMM E-Value=3e-24) 36 0.048
SB_18810| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.083
SB_3253| Best HMM Match : Ldl_recept_a (HMM E-Value=0.00064) 34 0.11
SB_22727| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.59
SB_16967| Best HMM Match : Laminin_EGF (HMM E-Value=0) 32 0.59
SB_20531| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.77
SB_17635| Best HMM Match : CUB (HMM E-Value=0) 31 0.77
SB_41869| Best HMM Match : Laminin_EGF (HMM E-Value=9.7e-23) 31 0.77
SB_32904| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.77
SB_17897| Best HMM Match : Ldl_recept_a (HMM E-Value=1.2e-14) 31 0.77
SB_8478| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.77
SB_2014| Best HMM Match : MAM (HMM E-Value=0) 31 1.4
SB_34641| Best HMM Match : Mucin (HMM E-Value=4.3) 30 1.8
SB_33807| Best HMM Match : RNA_pol (HMM E-Value=2.7e-10) 29 3.1
SB_28040| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.1
SB_35006| Best HMM Match : PT (HMM E-Value=3.4) 29 5.5
SB_23397| Best HMM Match : DSL (HMM E-Value=0.00011) 29 5.5
SB_45039| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.5
SB_16878| Best HMM Match : Keratin_B2 (HMM E-Value=0.19) 29 5.5
SB_50139| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.2
SB_54415| Best HMM Match : TSP_1 (HMM E-Value=6.8e-21) 28 7.2
SB_32130| Best HMM Match : TSP_1 (HMM E-Value=0) 28 7.2
SB_27138| Best HMM Match : Ebp2 (HMM E-Value=1.8) 28 7.2
SB_21938| Best HMM Match : Big_2 (HMM E-Value=0.69) 28 7.2
SB_14947| Best HMM Match : TSP_1 (HMM E-Value=6.8e-21) 28 7.2
SB_5403| Best HMM Match : TSP_1 (HMM E-Value=0) 28 7.2
SB_3455| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.5
>SB_58590| Best HMM Match : Polysacc_deac_1 (HMM E-Value=2.6e-08)
Length = 893
Score = 107 bits (256), Expect = 1e-23
Identities = 47/85 (55%), Positives = 63/85 (74%)
Frame = +3
Query: 513 CVLPDCFCSEDGTVIPGDLPARDVPQMITITFDDAINNNNIELYKEIFNGKRKNPNGCDI 692
C LP+CFCS G ++PG L +++PQMI +TFDDAIN +Y++IFNGK KNPNGCDI
Sbjct: 574 CKLPNCFCS--GALVPGGLNPKEIPQMIMLTFDDAINGQVYPVYQKIFNGK-KNPNGCDI 630
Query: 693 KATYFVSHKYTNYSAVQETQPQGYE 767
+AT+FVSH+YT Y +Q + +E
Sbjct: 631 RATFFVSHEYTQYQLLQALYHERHE 655
>SB_641| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 530
Score = 80.2 bits (189), Expect = 2e-15
Identities = 40/86 (46%), Positives = 51/86 (59%)
Frame = +3
Query: 510 QCVLPDCFCSEDGTVIPGDLPARDVPQMITITFDDAINNNNIELYKEIFNGKRKNPNGCD 689
+C P+C CS+D PG L PQ+I ITFDD I N E YK+ G NPNGC
Sbjct: 34 KCQPPNCRCSDDFQP-PGGLSPALTPQIIMITFDDDITVINYEQYKDAVKGFT-NPNGCP 91
Query: 690 IKATYFVSHKYTNYSAVQETQPQGYE 767
I AT+F+SH YTNY ++ +G+E
Sbjct: 92 ITATFFISHNYTNYYLAEKLHSEGHE 117
>SB_4485| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1769
Score = 75.4 bits (177), Expect = 5e-14
Identities = 32/64 (50%), Positives = 44/64 (68%)
Frame = +3
Query: 540 EDGTVIPGDLPARDVPQMITITFDDAINNNNIELYKEIFNGKRKNPNGCDIKATYFVSHK 719
E G +P L + +PQMI +TFDDAIN Y+ + N KNPNGC+++AT+FVSH+
Sbjct: 1551 ECGASVPNGLDPKQIPQMIMLTFDDAINMQVFPFYQTLLNDT-KNPNGCNVRATFFVSHE 1609
Query: 720 YTNY 731
YT+Y
Sbjct: 1610 YTDY 1613
>SB_48688| Best HMM Match : Ldl_recept_a (HMM E-Value=7.8e-26)
Length = 351
Score = 50.8 bits (116), Expect = 1e-06
Identities = 24/64 (37%), Positives = 28/64 (43%)
Frame = +1
Query: 361 CQDGFLACGDSTCIERGLFCNGEKDCGDGSDENSCDIDNDPNRAPPCDSCSVSFLTASAP 540
C+ C D C+ FCNGE DC DGSDE SCD A +C LT +
Sbjct: 74 CRSAEFKCPDGKCVHPSKFCNGESDCTDGSDEWSCDNSCSSRHACADGTCVTWSLTCNGV 133
Query: 541 RTAQ 552
Q
Sbjct: 134 SDCQ 137
Score = 46.0 bits (104), Expect = 3e-05
Identities = 20/40 (50%), Positives = 22/40 (55%)
Frame = +1
Query: 379 ACGDSTCIERGLFCNGEKDCGDGSDENSCDIDNDPNRAPP 498
AC D TC+ L CNG DC DGSDE +D R PP
Sbjct: 117 ACADGTCVTWSLTCNGVSDCQDGSDEPKLCGKHDTMRPPP 156
Score = 32.3 bits (70), Expect = 0.44
Identities = 15/58 (25%), Positives = 26/58 (44%)
Frame = +1
Query: 292 VKNCKLKNKERKIKPLLYTEEPLCQDGFLACGDSTCIERGLFCNGEKDCGDGSDENSC 465
V +L + ++PL C C + C+ + + C+G+ C D SDE +C
Sbjct: 15 VSRIRLTTESCHMQPLHAHPSHSCHGDQFQCLNGMCVGQEVRCDGDYACVDHSDERNC 72
>SB_30577| Best HMM Match : Ldl_recept_a (HMM E-Value=2.8e-25)
Length = 147
Score = 50.8 bits (116), Expect = 1e-06
Identities = 24/64 (37%), Positives = 28/64 (43%)
Frame = +1
Query: 361 CQDGFLACGDSTCIERGLFCNGEKDCGDGSDENSCDIDNDPNRAPPCDSCSVSFLTASAP 540
C+ C D C+ FCNGE DC DGSDE SCD A +C LT +
Sbjct: 74 CRSAEFKCPDGKCVHPSKFCNGESDCTDGSDEWSCDNSCSSRHACADGTCVTWSLTCNGV 133
Query: 541 RTAQ 552
Q
Sbjct: 134 SDCQ 137
Score = 41.5 bits (93), Expect = 7e-04
Identities = 16/26 (61%), Positives = 17/26 (65%)
Frame = +1
Query: 379 ACGDSTCIERGLFCNGEKDCGDGSDE 456
AC D TC+ L CNG DC DGSDE
Sbjct: 117 ACADGTCVTWSLTCNGVSDCQDGSDE 142
Score = 33.5 bits (73), Expect = 0.19
Identities = 16/58 (27%), Positives = 26/58 (44%)
Frame = +1
Query: 292 VKNCKLKNKERKIKPLLYTEEPLCQDGFLACGDSTCIERGLFCNGEKDCGDGSDENSC 465
V +L + ++PL C C + C+ + L C+G+ C D SDE +C
Sbjct: 15 VSRIRLTTESCHMQPLHAHPSHSCHGDQFQCLNGMCVGQELRCDGDYACVDHSDERNC 72
>SB_6273| Best HMM Match : MAM (HMM E-Value=0)
Length = 4272
Score = 48.4 bits (110), Expect = 6e-06
Identities = 18/37 (48%), Positives = 23/37 (62%)
Frame = +1
Query: 355 PLCQDGFLACGDSTCIERGLFCNGEKDCGDGSDENSC 465
P+CQ G C +CI+ G C+ DCGD SDEN+C
Sbjct: 2091 PMCQYGQFRCARGSCIDTGRVCDFTDDCGDNSDENNC 2127
Score = 43.6 bits (98), Expect = 2e-04
Identities = 18/41 (43%), Positives = 22/41 (53%)
Frame = +1
Query: 355 PLCQDGFLACGDSTCIERGLFCNGEKDCGDGSDENSCDIDN 477
P C G C D +CI + L C+ + DC DG DE SC N
Sbjct: 2244 PPCPFGLFRCTDGSCIMQSLRCDYQNDCSDGLDEASCGTCN 2284
Score = 41.1 bits (92), Expect = 0.001
Identities = 18/44 (40%), Positives = 22/44 (50%)
Frame = +1
Query: 334 PLLYTEEPLCQDGFLACGDSTCIERGLFCNGEKDCGDGSDENSC 465
P T P C G C + CI C+ +KDC DGSDE +C
Sbjct: 2541 PPTSTPPPGCNSGEHRCSNGQCINAIQVCDFKKDCSDGSDEATC 2584
Score = 38.3 bits (85), Expect = 0.007
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +1
Query: 370 GFLACGDSTCIERGLFCNGEKDCGDGSDENSC 465
G++ C + CI++ C+ DCGD SDE C
Sbjct: 3207 GYVKCTNGGCIQKSKLCDFTDDCGDNSDEGRC 3238
Score = 33.9 bits (74), Expect = 0.15
Identities = 14/41 (34%), Positives = 18/41 (43%)
Frame = +1
Query: 358 LCQDGFLACGDSTCIERGLFCNGEKDCGDGSDENSCDIDND 480
+C C +C C+ DCGD SDE SC N+
Sbjct: 3619 VCTRSQFRCTRGSCTSSDNVCDFSDDCGDSSDERSCSSYNN 3659
Score = 33.1 bits (72), Expect = 0.25
Identities = 25/78 (32%), Positives = 36/78 (46%), Gaps = 3/78 (3%)
Frame = +1
Query: 244 RFVLDIEKQTCDWKD-AVKNCKLKNKERKIKPLLYTEEPLCQDGFLACGDSTCIERGLFC 420
+ VL+ ++ + D AV + KL+N KPL T C C CI + C
Sbjct: 4025 QIVLESKRSNGNQGDIAVDDVKLEN----CKPLDVTRP--CNTDEFKCSRGGCIPKSYLC 4078
Query: 421 NGEKDC--GDGSDENSCD 468
+ + DC D SDE+ CD
Sbjct: 4079 DYQADCMFNDLSDESKCD 4096
Score = 32.3 bits (70), Expect = 0.44
Identities = 19/49 (38%), Positives = 24/49 (48%)
Frame = +1
Query: 376 LACGDSTCIERGLFCNGEKDCGDGSDENSCDIDNDPNRAPPCDSCSVSF 522
+A G + CI C+ K+C DGSDE +C P CD S SF
Sbjct: 3855 VAEGPNACILSTQVCDFSKNCKDGSDEKNC-------VQPSCDFSSGSF 3896
Score = 30.7 bits (66), Expect = 1.4
Identities = 13/26 (50%), Positives = 14/26 (53%)
Frame = +1
Query: 388 DSTCIERGLFCNGEKDCGDGSDENSC 465
D CI C+ DC DGSDE SC
Sbjct: 3435 DGKCIPLTSVCDFNVDCLDGSDERSC 3460
Score = 30.3 bits (65), Expect = 1.8
Identities = 12/34 (35%), Positives = 15/34 (44%)
Frame = +1
Query: 361 CQDGFLACGDSTCIERGLFCNGEKDCGDGSDENS 462
C C CI C+ E DC DGS+E +
Sbjct: 2783 CSSNQFRCDSGHCISSSSKCDFETDCCDGSEERN 2816
>SB_50311| Best HMM Match : Ldl_recept_a (HMM E-Value=3.4e-20)
Length = 772
Score = 48.0 bits (109), Expect = 8e-06
Identities = 20/60 (33%), Positives = 29/60 (48%)
Frame = +1
Query: 289 AVKNCKLKNKERKIKPLLYTEEPLCQDGFLACGDSTCIERGLFCNGEKDCGDGSDENSCD 468
A+ N + + IKP C G C + CI + L+C+G+ C DGSDE C+
Sbjct: 67 AIANVSITTRSCAIKPTFSFPGHSCGSGEFQCDNGKCIRKNLYCDGDFACVDGSDETRCE 126
Score = 36.7 bits (81), Expect = 0.021
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = +1
Query: 361 CQDGFLACGDSTCIERGLFCNGEKDCGDGSDENSC 465
C C CI C+G+KDC D +DE +C
Sbjct: 127 CPSNMFLCPSGECIMGTQLCDGKKDCTDNTDEKNC 161
>SB_47789| Best HMM Match : Ldl_recept_a (HMM E-Value=4.2e-34)
Length = 262
Score = 47.6 bits (108), Expect = 1e-05
Identities = 20/55 (36%), Positives = 27/55 (49%)
Frame = +1
Query: 301 CKLKNKERKIKPLLYTEEPLCQDGFLACGDSTCIERGLFCNGEKDCGDGSDENSC 465
C+ +N E + T C G CG+ CI C+ + DCGD SDEN+C
Sbjct: 168 CRCQNGEVLVNGQCKTLSGTCAPGQFKCGNGKCIPSSWKCDHDNDCGDNSDENNC 222
Score = 34.7 bits (76), Expect = 0.083
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = +1
Query: 361 CQDGFLACGDSTCIERGLFCNGEKDCGDGSDENSC 465
C C + CI C+ + DCGD SDE +C
Sbjct: 227 CNPSQFKCDNGRCISSKWRCDHDNDCGDMSDERNC 261
>SB_13477| Best HMM Match : Ldl_recept_a (HMM E-Value=0)
Length = 628
Score = 46.4 bits (105), Expect = 3e-05
Identities = 16/35 (45%), Positives = 21/35 (60%)
Frame = +1
Query: 361 CQDGFLACGDSTCIERGLFCNGEKDCGDGSDENSC 465
C G +C + CI R C+ + DCGDGSDE +C
Sbjct: 50 CNSGQFSCSNGRCISRSWVCDRDNDCGDGSDERNC 84
Score = 39.5 bits (88), Expect = 0.003
Identities = 16/41 (39%), Positives = 22/41 (53%)
Frame = +1
Query: 361 CQDGFLACGDSTCIERGLFCNGEKDCGDGSDENSCDIDNDP 483
C+ +C + C+ L C+G DCGD SDE SC+ P
Sbjct: 103 CRSWEFSCLNGRCVFYRLVCDGVDDCGDSSDEMSCNATATP 143
Score = 38.7 bits (86), Expect = 0.005
Identities = 14/38 (36%), Positives = 18/38 (47%)
Frame = +1
Query: 382 CGDSTCIERGLFCNGEKDCGDGSDENSCDIDNDPNRAP 495
C + C+ C+G+ DCGD SDE C P P
Sbjct: 156 CANRRCVYNSQRCDGQNDCGDWSDETGCSTPPIPTTCP 193
Score = 34.7 bits (76), Expect = 0.083
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = +1
Query: 361 CQDGFLACGDSTCIERGLFCNGEKDCGDGSDE 456
C C + CI C+G+ DCGD SDE
Sbjct: 10 CPSNRFRCNNGRCIPMSWRCDGDNDCGDMSDE 41
>SB_45709| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1112
Score = 46.0 bits (104), Expect = 3e-05
Identities = 26/77 (33%), Positives = 35/77 (45%)
Frame = +1
Query: 235 LPGRFVLDIEKQTCDWKDAVKNCKLKNKERKIKPLLYTEEPLCQDGFLACGDSTCIERGL 414
+PGRF D D D +NC+ + E +C DG + C+ R
Sbjct: 436 IPGRFRCDHRSDCLDGSDE-QNCQNVTRPTPPPVKCRKNERMCADG------NGCVHRRW 488
Query: 415 FCNGEKDCGDGSDENSC 465
C+GE+DC DGSDE C
Sbjct: 489 ICDGERDCLDGSDEAGC 505
Score = 42.7 bits (96), Expect = 3e-04
Identities = 15/35 (42%), Positives = 19/35 (54%)
Frame = +1
Query: 361 CQDGFLACGDSTCIERGLFCNGEKDCGDGSDENSC 465
C C +S C+ C+GE DCGD SDE+ C
Sbjct: 343 CPPSDFTCANSQCVPNSFRCDGENDCGDRSDESGC 377
Score = 40.3 bits (90), Expect = 0.002
Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = +1
Query: 382 CGDSTCIERGLFCNGEKDCGDGSDENSCDIDNDPNRAPPCD-SCSVS 519
C + C+ + C+G DCGD SDE++C P PP D +C+ S
Sbjct: 308 CRNGRCVLKEWLCDGMDDCGDSSDEDNCP-TRPPYTCPPSDFTCANS 353
Score = 39.1 bits (87), Expect = 0.004
Identities = 16/48 (33%), Positives = 21/48 (43%)
Frame = +1
Query: 346 TEEPLCQDGFLACGDSTCIERGLFCNGEKDCGDGSDENSCDIDNDPNR 489
T C C + CI+ C+G DC D SDE +C + P R
Sbjct: 125 TARMTCDPSQHTCNNGQCIKASWLCDGASDCQDNSDEMNCPLTLAPGR 172
Score = 37.1 bits (82), Expect = 0.016
Identities = 15/41 (36%), Positives = 19/41 (46%)
Frame = +1
Query: 361 CQDGFLACGDSTCIERGLFCNGEKDCGDGSDENSCDIDNDP 483
C C + CI C+G +CGDGSDE C + P
Sbjct: 510 CSSDEFTCTNQKCIPLPQKCDGTDNCGDGSDEKMCPTPSVP 550
Score = 33.9 bits (74), Expect = 0.15
Identities = 19/60 (31%), Positives = 23/60 (38%)
Frame = +1
Query: 286 DAVKNCKLKNKERKIKPLLYTEEPLCQDGFLACGDSTCIERGLFCNGEKDCGDGSDENSC 465
D +C ++ E KP C C D CI C+ E DC D SDE C
Sbjct: 363 DGENDCGDRSDESGCKPTT-----TCSANEFRCDDGRCITSTFRCDREFDCTDRSDERGC 417
Score = 31.1 bits (67), Expect = 1.0
Identities = 14/41 (34%), Positives = 17/41 (41%), Gaps = 1/41 (2%)
Frame = +1
Query: 358 LCQDGFLACGDST-CIERGLFCNGEKDCGDGSDENSCDIDN 477
+C CG ST CI C+ C G DE +C N
Sbjct: 571 VCPRDHFRCGSSTICIANSKVCDATPHCPHGEDERNCATRN 611
Score = 30.7 bits (66), Expect = 1.4
Identities = 16/46 (34%), Positives = 18/46 (39%)
Frame = +1
Query: 373 FLACGDSTCIERGLFCNGEKDCGDGSDENSCDIDNDPNRAPPCDSC 510
F CI C+ DC DGSDE +C N PP C
Sbjct: 427 FTCAFSGRCIPGRFRCDHRSDCLDGSDEQNC--QNVTRPTPPPVKC 470
>SB_27746| Best HMM Match : MAM (HMM E-Value=1.4013e-45)
Length = 622
Score = 44.8 bits (101), Expect = 8e-05
Identities = 16/35 (45%), Positives = 22/35 (62%)
Frame = +1
Query: 361 CQDGFLACGDSTCIERGLFCNGEKDCGDGSDENSC 465
C + C + C++RGL C+G+K C DGSDE C
Sbjct: 183 CLEDEFGCENGQCVKRGLLCDGDKACLDGSDEKHC 217
Score = 41.5 bits (93), Expect = 7e-04
Identities = 23/89 (25%), Positives = 34/89 (38%)
Frame = +1
Query: 211 CLGNTSYTLPGRFVLDIEKQTCDWKDAVKNCKLKNKERKIKPLLYTEEPLCQDGFLACGD 390
C + LPG L+ ++ C+ VK L + ++ + C C
Sbjct: 170 CAVQPPFALPGHECLE-DEFGCENGQCVKRGLLCDGDKACLDGSDEKHCSCPSNMFLCPS 228
Query: 391 STCIERGLFCNGEKDCGDGSDENSCDIDN 477
CI CN E DC D +DE +C N
Sbjct: 229 GECIPTTALCNNENDCSDNADERNCQYAN 257
>SB_29580| Best HMM Match : Ldl_recept_a (HMM E-Value=4.2e-38)
Length = 130
Score = 44.4 bits (100), Expect = 1e-04
Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Frame = +1
Query: 358 LCQDGFLACGDST-CIERGLFCNGEKDCGDGSDENSCDIDNDPNRAPPC-DSCSVS 519
+C+D CG S CI + C+G+ DC G DE +C P PP C +S
Sbjct: 42 VCRDDQFQCGTSRKCIRKSKICDGKSDCSGGEDEKNCVKPQTPPPTPPLKPKCRIS 97
Score = 43.2 bits (97), Expect = 2e-04
Identities = 23/68 (33%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
Frame = +1
Query: 265 KQTCDWKDAVKNCKLKNKERKIKPLLYTEEPLCQDGFLACGD-STCIERGLFCNGEKDCG 441
K C + KNC PL +P C+ C + S C++R C+G +DC
Sbjct: 66 KSDCSGGEDEKNCVKPQTPPPTPPL----KPKCRISQRRCDNGSGCVDRMKICDGMRDCA 121
Query: 442 DGSDENSC 465
DGSDE C
Sbjct: 122 DGSDERGC 129
Score = 35.5 bits (78), Expect = 0.048
Identities = 14/35 (40%), Positives = 16/35 (45%)
Frame = +1
Query: 361 CQDGFLACGDSTCIERGLFCNGEKDCGDGSDENSC 465
C C + CI R C+ E DC D SDE C
Sbjct: 4 CSATEFRCNNGRCITRAFRCDDEDDCLDNSDEQGC 38
>SB_56441| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1717
Score = 44.4 bits (100), Expect = 1e-04
Identities = 16/28 (57%), Positives = 18/28 (64%)
Frame = +1
Query: 382 CGDSTCIERGLFCNGEKDCGDGSDENSC 465
C CIE FC+G+KDCGDG DE C
Sbjct: 703 CSSGECIEVATFCDGKKDCGDGFDETHC 730
Score = 40.7 bits (91), Expect = 0.001
Identities = 17/60 (28%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Frame = +1
Query: 289 AVKNCKLKNKERKIKPLLYTEEPLCQDGFLACGDSTCIERGLFCNGEKD-CGDGSDENSC 465
A+++ ++ ++ P++ C D C + C+ + CNG +D C DGSDE+ C
Sbjct: 635 AIRDIQITTEDCLCTPVIAEPGYKCLDHLFTCNNGECVTKTSRCNGMRDSCVDGSDESGC 694
>SB_10498| Best HMM Match : Ldl_recept_a (HMM E-Value=2.7e-07)
Length = 106
Score = 44.0 bits (99), Expect = 1e-04
Identities = 17/37 (45%), Positives = 20/37 (54%)
Frame = +1
Query: 361 CQDGFLACGDSTCIERGLFCNGEKDCGDGSDENSCDI 471
C C D TCI+R CNG+ DC D SDE C +
Sbjct: 4 CPGSKYECRDGTCIDRNEHCNGKIDCPDASDEKGCGL 40
>SB_47667| Best HMM Match : Ldl_recept_a (HMM E-Value=0)
Length = 3891
Score = 43.6 bits (98), Expect = 2e-04
Identities = 21/53 (39%), Positives = 23/53 (43%)
Frame = +1
Query: 349 EEPLCQDGFLACGDSTCIERGLFCNGEKDCGDGSDENSCDIDNDPNRAPPCDS 507
E C C TCI R C+ + DCGDGSDE C PN C S
Sbjct: 2453 ERATCDVTQFRCKTGTCITREWRCDHQDDCGDGSDEQQCVNYTCPNHTFKCTS 2505
Score = 43.6 bits (98), Expect = 2e-04
Identities = 23/66 (34%), Positives = 29/66 (43%), Gaps = 2/66 (3%)
Frame = +1
Query: 361 CQDGFLACGDSTCIERGLFCNGEKDCGDGSDENSCDIDNDPNRAP--PCDSCSVSFLTAS 534
C + C CI C+G+ DC DGSDE CD+ A C SC +L S
Sbjct: 2496 CPNHTFKCTSGHCIANSSVCDGDTDCADGSDEKDCDLGTSTCGAGLFRC-SCRPGYLLMS 2554
Query: 535 APRTAQ 552
R+ Q
Sbjct: 2555 DGRSCQ 2560
Score = 43.2 bits (97), Expect = 2e-04
Identities = 20/52 (38%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Frame = +1
Query: 361 CQDGFLACGDST-CIERGLFCNGEKDCGDGSDENSCDIDNDPNRAPPCDSCS 513
C+ AC + CI+R C+GE DCGD SDE C +++ N C + S
Sbjct: 1087 CKPFEFACANGRHCIQRKWICDGENDCGDRSDEVDCGLESCGNDRWRCSNTS 1138
Score = 41.9 bits (94), Expect = 5e-04
Identities = 19/47 (40%), Positives = 21/47 (44%)
Frame = +1
Query: 361 CQDGFLACGDSTCIERGLFCNGEKDCGDGSDENSCDIDNDPNRAPPC 501
C DG +C D CI R C+G DC D SDE P R C
Sbjct: 3207 CADGQFSCDDGLCIARAWKCDGMMDCADASDEKGSGHRWCPQRLYQC 3253
Score = 41.5 bits (93), Expect = 7e-04
Identities = 15/35 (42%), Positives = 19/35 (54%)
Frame = +1
Query: 361 CQDGFLACGDSTCIERGLFCNGEKDCGDGSDENSC 465
C+ G +C + CI C+ E DCGD SDE C
Sbjct: 2209 CEPGHFSCNNGRCINAKWVCDRENDCGDNSDEARC 2243
Score = 41.5 bits (93), Expect = 7e-04
Identities = 18/38 (47%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Frame = +1
Query: 361 CQDGFLACGDSTCIERGLFCNGEKDCGDGSDE-NSCDI 471
C + C + CI R C+GE DCGDGSDE +SC +
Sbjct: 2926 CTNNDFMCDNYRCISRLWRCDGEDDCGDGSDEPDSCPV 2963
Score = 40.7 bits (91), Expect = 0.001
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +1
Query: 361 CQDGFLACGDSTCIERGLFCNGEKDCGDGSDENS 462
C AC C+ + C+G+ DC DGSDE+S
Sbjct: 2168 CASSEFACESGQCVRKSFVCDGDNDCHDGSDESS 2201
Score = 40.7 bits (91), Expect = 0.001
Identities = 15/34 (44%), Positives = 19/34 (55%)
Frame = +1
Query: 361 CQDGFLACGDSTCIERGLFCNGEKDCGDGSDENS 462
C AC + CI L C+G+ DCGD SDE +
Sbjct: 2370 CTGAQFACDNGRCISTRLLCDGDNDCGDNSDETT 2403
Score = 40.3 bits (90), Expect = 0.002
Identities = 15/35 (42%), Positives = 17/35 (48%)
Frame = +1
Query: 361 CQDGFLACGDSTCIERGLFCNGEKDCGDGSDENSC 465
C C + C R C+G DCGDGSDE C
Sbjct: 910 CSASMFRCANGQCKPRDWVCDGFDDCGDGSDEKGC 944
Score = 39.9 bits (89), Expect = 0.002
Identities = 14/28 (50%), Positives = 19/28 (67%)
Frame = +1
Query: 382 CGDSTCIERGLFCNGEKDCGDGSDENSC 465
C + CI + C+G KDC DGSDE++C
Sbjct: 95 CANGRCINKKWRCDGMKDCADGSDESTC 122
Score = 37.9 bits (84), Expect = 0.009
Identities = 15/34 (44%), Positives = 18/34 (52%)
Frame = +1
Query: 361 CQDGFLACGDSTCIERGLFCNGEKDCGDGSDENS 462
C C + CI + C+GE DCGD SDE S
Sbjct: 47 CPPTKFLCANGMCIPKSAVCDGENDCGDMSDEPS 80
Score = 37.9 bits (84), Expect = 0.009
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = +1
Query: 361 CQDGFLACGDSTCIERGLFCNGEKDCGDGSDENSCDI 471
C C + C+ R C+G DC DGSDE +C +
Sbjct: 3007 CAPYHFRCDNFRCVYRSRVCDGIDDCRDGSDERNCHV 3043
Score = 37.5 bits (83), Expect = 0.012
Identities = 15/38 (39%), Positives = 18/38 (47%)
Frame = +1
Query: 352 EPLCQDGFLACGDSTCIERGLFCNGEKDCGDGSDENSC 465
E C C + C+ C+GE DCGD SDE C
Sbjct: 2245 EVTCPAHEFTCPNGRCVSYDFLCDGEDDCGDFSDELRC 2282
Score = 37.5 bits (83), Expect = 0.012
Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = +1
Query: 361 CQDGFLAC-GDSTCIERGLFCNGEKDCGDGSDEN 459
C +C S C+ C+GE DCGDGSDE+
Sbjct: 2414 CTQSEYSCRSTSRCVPLAFVCDGENDCGDGSDES 2447
Score = 37.5 bits (83), Expect = 0.012
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = +1
Query: 361 CQDGFLACGDSTCIERGLFCNGEKDCGDGSDENS 462
C C CI R C+G+ DCGD SDE +
Sbjct: 3046 CTADQFRCPSGRCISRDWLCDGDNDCGDSSDEKA 3079
Score = 37.5 bits (83), Expect = 0.012
Identities = 15/31 (48%), Positives = 16/31 (51%)
Frame = +1
Query: 373 FLACGDSTCIERGLFCNGEKDCGDGSDENSC 465
F D CI C+GE DC DGSDE C
Sbjct: 3133 FRCYSDRRCIPNQWKCDGESDCNDGSDEKGC 3163
Score = 36.3 bits (80), Expect = 0.027
Identities = 13/28 (46%), Positives = 14/28 (50%)
Frame = +1
Query: 382 CGDSTCIERGLFCNGEKDCGDGSDENSC 465
C CI C+ DCGDGSDE C
Sbjct: 3175 CASGRCISASWVCDHVNDCGDGSDEQQC 3202
Score = 35.9 bits (79), Expect = 0.036
Identities = 15/35 (42%), Positives = 18/35 (51%)
Frame = +1
Query: 355 PLCQDGFLACGDSTCIERGLFCNGEKDCGDGSDEN 459
P C G C + CI C+GE DC D SDE+
Sbjct: 823 PPCSAGKFTCKNGHCISLRWKCDGENDCVDNSDED 857
Score = 35.5 bits (78), Expect = 0.048
Identities = 15/33 (45%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Frame = +1
Query: 361 CQDGFLACGDST-CIERGLFCNGEKDCGDGSDE 456
C G + CG CI C+G DCGDG DE
Sbjct: 2287 CVPGQVKCGSKNLCIPSSWLCDGSDDCGDGWDE 2319
Score = 35.5 bits (78), Expect = 0.048
Identities = 17/35 (48%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Frame = +1
Query: 361 CQDGFLACGDST-CIERGLFCNGEKDCGDGSDENS 462
C G C CI C+GE DC DGSDENS
Sbjct: 3086 CPAGQARCATGRRCIPSEWRCDGESDCEDGSDENS 3120
Score = 35.1 bits (77), Expect = 0.063
Identities = 18/44 (40%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Frame = +1
Query: 352 EPLCQ-DGFLACGDSTCIERGLFCNGEKDCGDGSDENSCDIDND 480
E C+ D + G S CI C+G DCGD DE S +D D
Sbjct: 124 EGTCRPDEWHCIGTSRCIPLSRVCDGTNDCGDNYDEGSHCLDLD 167
Score = 32.7 bits (71), Expect = 0.34
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +1
Query: 391 STCIERGLFCNGEKDCGDGSDENSC 465
S CI C+ + DCGD SDE +C
Sbjct: 1058 SRCIPLRFVCDADDDCGDRSDERNC 1082
Score = 31.9 bits (69), Expect = 0.59
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = +1
Query: 361 CQDGFLACGDSTCIERGLFCNGEKDCGDGSDE 456
C C + C++R C+ DCGD SDE
Sbjct: 3246 CPQRLYQCINHVCVDRRWLCDDMDDCGDYSDE 3277
Score = 31.9 bits (69), Expect = 0.59
Identities = 18/64 (28%), Positives = 25/64 (39%)
Frame = +1
Query: 286 DAVKNCKLKNKERKIKPLLYTEEPLCQDGFLACGDSTCIERGLFCNGEKDCGDGSDENSC 465
D V +C K+ E + C+ C + C+ C+ DCGD SDE C
Sbjct: 3307 DGVYHCTDKSDEAPYRSC--PARVACRKDQFKCLNRRCVPVRAVCDSNDDCGDISDELQC 3364
Query: 466 DIDN 477
N
Sbjct: 3365 PSTN 3368
Score = 31.5 bits (68), Expect = 0.77
Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Frame = +1
Query: 367 DGFLACGDSTCIERGLFCNGEKDCGDGSDEN-SCDID 474
D + S CI + C+G DC D SDE C +D
Sbjct: 1130 DRWRCSNTSRCIAKSQVCDGRVDCPDASDEGPGCGLD 1166
Score = 30.3 bits (65), Expect = 1.8
Identities = 15/44 (34%), Positives = 18/44 (40%), Gaps = 1/44 (2%)
Frame = +1
Query: 349 EEPLCQDGFLACGDSTCIERGLFCNGEKDCGDGSDE-NSCDIDN 477
E P C C C+ C+G+ DC D SDE C N
Sbjct: 2325 ERP-CNVSEFRCTSGECVPASWRCDGDNDCTDKSDEPTDCQRSN 2367
Score = 30.3 bits (65), Expect = 1.8
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = +1
Query: 358 LCQDGFLACGDSTCIERGLFCNGEKDCGDGSDE 456
+C++ C ++ CI + C+G C D SDE
Sbjct: 3286 ICRNSHFRCDNNKCIPKWNVCDGVYHCTDKSDE 3318
Score = 29.5 bits (63), Expect = 3.1
Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Frame = +1
Query: 358 LCQDGFLACGDST-CIERGLFCNGEKDCGDGSDENSC 465
+C+ G C D+ CI C+G C G DE++C
Sbjct: 2965 VCKPGTYQCADNRKCISVLEVCDGIPSCPAGDDESNC 3001
>SB_5319| Best HMM Match : Ldl_recept_a (HMM E-Value=7.56701e-44)
Length = 212
Score = 43.2 bits (97), Expect = 2e-04
Identities = 20/52 (38%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Frame = +1
Query: 361 CQDGFLACGDST-CIERGLFCNGEKDCGDGSDENSCDIDNDPNRAPPCDSCS 513
C+ AC + CI+R C+GE DCGD SDE C +++ N C + S
Sbjct: 114 CKPFEFACANGRHCIQRKWICDGENDCGDRSDEVDCGLESCGNDRWRCSNTS 165
Score = 32.7 bits (71), Expect = 0.34
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +1
Query: 391 STCIERGLFCNGEKDCGDGSDENSC 465
S CI C+ + DCGD SDE +C
Sbjct: 85 SRCIPLRFVCDADDDCGDRSDERNC 109
Score = 31.5 bits (68), Expect = 0.77
Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Frame = +1
Query: 367 DGFLACGDSTCIERGLFCNGEKDCGDGSDEN-SCDID 474
D + S CI + C+G DC D SDE C +D
Sbjct: 157 DRWRCSNTSRCIAKSQVCDGRVDCPDASDEGPGCGLD 193
>SB_40871| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 279
Score = 42.3 bits (95), Expect = 4e-04
Identities = 16/35 (45%), Positives = 19/35 (54%)
Frame = +1
Query: 361 CQDGFLACGDSTCIERGLFCNGEKDCGDGSDENSC 465
C G C + CI R C+ + DCGDGSDE C
Sbjct: 160 CGAGRYRCDNDRCIPRNWVCDRDNDCGDGSDETGC 194
Score = 40.7 bits (91), Expect = 0.001
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = +1
Query: 361 CQDGFLACGDSTCIERGLFCNGEKDCGDGSDENSCD 468
C C + C+ R C+ + DCGDGSDE C+
Sbjct: 118 CSSSQFRCRNGRCVSRSWVCDKDNDCGDGSDEVQCN 153
Score = 35.1 bits (77), Expect = 0.063
Identities = 14/28 (50%), Positives = 16/28 (57%)
Frame = +1
Query: 382 CGDSTCIERGLFCNGEKDCGDGSDENSC 465
C + I R C+GE DC DGSDE C
Sbjct: 88 CSNGHLIYRHWRCDGENDCRDGSDETGC 115
>SB_47409| Best HMM Match : Ldl_recept_a (HMM E-Value=1.2e-17)
Length = 1571
Score = 41.9 bits (94), Expect = 5e-04
Identities = 19/49 (38%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Frame = +1
Query: 355 PLCQDGFLACG-DSTCIERGLFCNGEKDCGDGSDENSCDIDNDPNRAPP 498
P C +G CG C+ + L CNG+ DC D SDE C I + P
Sbjct: 724 PGCGNGEFYCGVPGECVPQTLRCNGQMDCRDASDEQDCGIPTVTTTSAP 772
Score = 33.9 bits (74), Expect = 0.15
Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 6/42 (14%)
Frame = +1
Query: 358 LCQDGFLACG-----DSTCIERGLFCNGEKDCG-DGSDENSC 465
LC G+ CG + +CI + L CNG DC G DE+ C
Sbjct: 1529 LCPSGYFYCGTGPKGEISCITKALRCNGIYDCSVTGWDEDGC 1570
>SB_53569| Best HMM Match : EGF_CA (HMM E-Value=0)
Length = 921
Score = 41.5 bits (93), Expect = 7e-04
Identities = 15/39 (38%), Positives = 23/39 (58%)
Frame = +1
Query: 367 DGFLACGDSTCIERGLFCNGEKDCGDGSDENSCDIDNDP 483
D L C + C ++ +C+G+ DC DGSDE +C +P
Sbjct: 226 DKQLRCDNGRCEDKRWWCDGQDDCNDGSDEKNCSASANP 264
>SB_4238| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1288
Score = 41.5 bits (93), Expect = 7e-04
Identities = 13/35 (37%), Positives = 22/35 (62%)
Frame = +1
Query: 361 CQDGFLACGDSTCIERGLFCNGEKDCGDGSDENSC 465
C + + CG+ C+ + C+ + DCGDG+DE +C
Sbjct: 667 CSENEITCGNGICVVKRWVCDQDDDCGDGTDELNC 701
Score = 39.5 bits (88), Expect = 0.003
Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
Frame = +1
Query: 346 TEEP-LCQDGFLACGDST-CIERGLFCNGEKDCGDGSDE-NSCDIDNDPNRAPPC 501
T+ P +C+DG CG S CI C+G DC + +DE ++C I+ + PC
Sbjct: 783 TKPPSICKDGEFQCGSSKQCIPESKVCDGSVDCTNSADEPDNCFINECKDNNGPC 837
Score = 39.1 bits (87), Expect = 0.004
Identities = 18/49 (36%), Positives = 24/49 (48%)
Frame = +1
Query: 361 CQDGFLACGDSTCIERGLFCNGEKDCGDGSDENSCDIDNDPNRAPPCDS 507
C+ C D CI C+G++DC D SDE +C PN + C S
Sbjct: 706 CRPNEFTCADKRCILSRWRCDGDRDCADNSDEINC-----PNSSQYCKS 749
Score = 37.5 bits (83), Expect = 0.012
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = +1
Query: 361 CQDGFLACGDSTCIERGLFCNGEKDCGDGSDENSC 465
C+ C CI + C+GE DC + SDEN+C
Sbjct: 747 CKSSEYQCSTGECIHKSWVCDGEFDCLNKSDENNC 781
Score = 36.3 bits (80), Expect = 0.027
Identities = 15/40 (37%), Positives = 20/40 (50%)
Frame = +1
Query: 346 TEEPLCQDGFLACGDSTCIERGLFCNGEKDCGDGSDENSC 465
++E + F CI C+GE DCGD SDE +C
Sbjct: 582 SQEAFLNNEFTCVNTQKCIAATWKCDGEDDCGDNSDEINC 621
Score = 34.7 bits (76), Expect = 0.083
Identities = 15/29 (51%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Frame = +1
Query: 382 CGDSTCIERGLFCNGEKDCGDGSDE-NSC 465
C + CI R C+ + DC DGSDE NSC
Sbjct: 634 CTNGRCIPRRWVCDKDDDCHDGSDERNSC 662
>SB_21487| Best HMM Match : MAM (HMM E-Value=0)
Length = 874
Score = 40.7 bits (91), Expect = 0.001
Identities = 19/47 (40%), Positives = 22/47 (46%)
Frame = +1
Query: 349 EEPLCQDGFLACGDSTCIERGLFCNGEKDCGDGSDENSCDIDNDPNR 489
E C C CI L C+ KDC DGSDE +C + DP R
Sbjct: 700 ENVSCTPESYKCRSGECISLDLLCDFNKDCLDGSDEENCGV-QDPGR 745
Score = 32.7 bits (71), Expect = 0.34
Identities = 12/23 (52%), Positives = 13/23 (56%)
Frame = +1
Query: 397 CIERGLFCNGEKDCGDGSDENSC 465
CI G C+ DCGDG DE C
Sbjct: 497 CISHGQLCDFVDDCGDGWDETGC 519
>SB_51630| Best HMM Match : Fz (HMM E-Value=3.3e-34)
Length = 1120
Score = 40.7 bits (91), Expect = 0.001
Identities = 18/43 (41%), Positives = 22/43 (51%)
Frame = +1
Query: 337 LLYTEEPLCQDGFLACGDSTCIERGLFCNGEKDCGDGSDENSC 465
LL+ C G C S CI L C+G +DC D SDE +C
Sbjct: 15 LLFRVVGCCDPGQFECTSSECIPDVLKCDGSEDCADSSDEINC 57
Score = 30.3 bits (65), Expect = 1.8
Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Frame = +1
Query: 346 TEEPLCQ-DGFLACGDSTCIERGLFCNGEKDCGDGSDENSC 465
T+ +C+ D F + CI C+G DC G+DE C
Sbjct: 58 TKRSMCRVDQFECLIEGDCIPLSKHCDGTWDCQHGTDEMDC 98
>SB_23898| Best HMM Match : Ldl_recept_a (HMM E-Value=1.4013e-45)
Length = 291
Score = 40.3 bits (90), Expect = 0.002
Identities = 15/35 (42%), Positives = 19/35 (54%)
Frame = +1
Query: 361 CQDGFLACGDSTCIERGLFCNGEKDCGDGSDENSC 465
C C + CI R C+ + DCGDGSDE +C
Sbjct: 134 CGSTQFRCRNGNCINRNYVCDKDNDCGDGSDEVAC 168
Score = 35.9 bits (79), Expect = 0.036
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +1
Query: 382 CGDSTCIERGLFCNGEKDCGDGSDENSC 465
C + C+ R C+G DC DG+DE C
Sbjct: 104 CNNGHCVHRNWKCDGSNDCRDGTDEVGC 131
Score = 32.3 bits (70), Expect = 0.44
Identities = 13/35 (37%), Positives = 16/35 (45%)
Frame = +1
Query: 361 CQDGFLACGDSTCIERGLFCNGEKDCGDGSDENSC 465
C G C + CI C+ DC D SDE+ C
Sbjct: 176 CGAGQYRCDNDRCIPLNWVCDRLNDCHDNSDESGC 210
>SB_50657| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 442
Score = 39.9 bits (89), Expect = 0.002
Identities = 15/35 (42%), Positives = 19/35 (54%)
Frame = +1
Query: 361 CQDGFLACGDSTCIERGLFCNGEKDCGDGSDENSC 465
C+ G C + CI L C+ + DCGD SDE C
Sbjct: 5 CKAGDFRCANGRCISGALVCDLDDDCGDESDERGC 39
>SB_45605| Best HMM Match : MAM (HMM E-Value=2.1e-16)
Length = 187
Score = 39.9 bits (89), Expect = 0.002
Identities = 15/35 (42%), Positives = 19/35 (54%)
Frame = +1
Query: 361 CQDGFLACGDSTCIERGLFCNGEKDCGDGSDENSC 465
C C +S C++R CN + DCGD SDE C
Sbjct: 145 CLASQYVCANSKCVDRDQLCNFKDDCGDNSDELPC 179
>SB_31927| Best HMM Match : Ldl_recept_a (HMM E-Value=2.3e-27)
Length = 157
Score = 39.9 bits (89), Expect = 0.002
Identities = 14/28 (50%), Positives = 18/28 (64%)
Frame = +1
Query: 382 CGDSTCIERGLFCNGEKDCGDGSDENSC 465
C + CI R C+ + DCGDGSDE +C
Sbjct: 7 CRNGNCINRNYVCDKDNDCGDGSDEVAC 34
Score = 32.3 bits (70), Expect = 0.44
Identities = 13/35 (37%), Positives = 16/35 (45%)
Frame = +1
Query: 361 CQDGFLACGDSTCIERGLFCNGEKDCGDGSDENSC 465
C G C + CI C+ DC D SDE+ C
Sbjct: 42 CGAGQYRCDNDRCIPLNWVCDRLNDCHDNSDESGC 76
>SB_13199| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 259
Score = 39.9 bits (89), Expect = 0.002
Identities = 13/29 (44%), Positives = 19/29 (65%)
Frame = +1
Query: 382 CGDSTCIERGLFCNGEKDCGDGSDENSCD 468
C + C+ R C+G+ DC DGSDE +C+
Sbjct: 28 CENKLCVPRTWLCDGDNDCHDGSDEKNCE 56
Score = 36.3 bits (80), Expect = 0.027
Identities = 14/26 (53%), Positives = 18/26 (69%)
Frame = +1
Query: 382 CGDSTCIERGLFCNGEKDCGDGSDEN 459
CG+STCI + C+G DC D SDE+
Sbjct: 72 CGNSTCIPLTVLCDGLYDCADRSDES 97
>SB_35350| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 626
Score = 39.1 bits (87), Expect = 0.004
Identities = 18/49 (36%), Positives = 24/49 (48%)
Frame = +1
Query: 361 CQDGFLACGDSTCIERGLFCNGEKDCGDGSDENSCDIDNDPNRAPPCDS 507
C+ C D CI C+G++DC D SDE +C PN + C S
Sbjct: 551 CRPNEFTCADKRCILSRWRCDGDRDCADNSDEINC-----PNSSQYCKS 594
Score = 31.5 bits (68), Expect = 0.77
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = +1
Query: 361 CQDGFLACGDSTCIERGLFCNGEKDCGDGSDENS 462
C+ C CI + C+GE DC + SDE +
Sbjct: 592 CKSSEYQCSTGECIHKSWVCDGEFDCLNKSDETT 625
>SB_51898| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1712
Score = 38.3 bits (85), Expect = 0.007
Identities = 15/36 (41%), Positives = 17/36 (47%)
Frame = +1
Query: 361 CQDGFLACGDSTCIERGLFCNGEKDCGDGSDENSCD 468
C+ F C CI C+ DCGD SDE CD
Sbjct: 1383 CEPNFFRCNTGKCISARWQCDQLDDCGDNSDEIGCD 1418
Score = 35.5 bits (78), Expect = 0.048
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = +1
Query: 355 PLCQDGFLACGDSTCIERGLFCNGEKDCGDGSDENSC 465
P C++ C + CI+ C+ K+C DGSDE C
Sbjct: 1344 PPCKENQFRCDNGQCIDGDPRCDKYKNCTDGSDELGC 1380
Score = 33.1 bits (72), Expect = 0.25
Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Frame = +1
Query: 349 EEPLCQDGFLACGD--STCIERGLFCNGEKDCGDGSDENSC 465
E C+ +++C + CI + C+G DC D SDE C
Sbjct: 1303 EPSTCKPNYISCASMKAICIPKMWRCDGMLDCTDKSDEEDC 1343
>SB_33423| Best HMM Match : Ldl_recept_a (HMM E-Value=7.8e-22)
Length = 133
Score = 37.5 bits (83), Expect = 0.012
Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = +1
Query: 361 CQDGFLACGDST-CIERGLFCNGEKDCGDGSDENSCDIDN 477
C +G AC + C+ + C+ DC DGSDE +C I +
Sbjct: 88 CAEGQFACEKTNKCLAKSSLCDTVHDCDDGSDEKNCPISS 127
>SB_19614| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 603
Score = 37.1 bits (82), Expect = 0.016
Identities = 17/42 (40%), Positives = 21/42 (50%)
Frame = +1
Query: 340 LYTEEPLCQDGFLACGDSTCIERGLFCNGEKDCGDGSDENSC 465
L + E C C + CI+ CN +DC DGSDE SC
Sbjct: 385 LVSSEGPCGPKKFTCQNRQCIDDFKQCNNRQDCRDGSDEISC 426
>SB_35576| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1315
Score = 37.1 bits (82), Expect = 0.016
Identities = 15/36 (41%), Positives = 18/36 (50%)
Frame = +1
Query: 361 CQDGFLACGDSTCIERGLFCNGEKDCGDGSDENSCD 468
C AC CI+ C+G DC D SDE+ CD
Sbjct: 1155 CLSSKFACESGECIDVVGLCDGTDDCKDASDESRCD 1190
Score = 35.1 bits (77), Expect = 0.063
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +1
Query: 361 CQDGFLACGDSTCIERGLFCNGEKDCGDGSDE 456
C C C++ L C+G+KDC DG+DE
Sbjct: 1193 CSKDEYQCVSGACVKWPLTCDGKKDCEDGTDE 1224
Score = 33.5 bits (73), Expect = 0.19
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +1
Query: 382 CGDSTCIERGLFCNGEKDCGDGSDENSC 465
C + C+ R L C+G+ C D SDE +C
Sbjct: 1126 CVNGQCVSRDLICDGDNACLDFSDEANC 1153
>SB_31087| Best HMM Match : Ldl_recept_a (HMM E-Value=4.2e-32)
Length = 1039
Score = 37.1 bits (82), Expect = 0.016
Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = +1
Query: 361 CQDGFLACGDST-CIERGLFCNGEKDCGDGSDENSCDI 471
C +G AC + C+ + C+ DC DGSDE +C I
Sbjct: 901 CAEGQFACEKTNKCLAKSSLCDTVHDCDDGSDEKNCPI 938
Score = 29.1 bits (62), Expect = 4.1
Identities = 17/61 (27%), Positives = 25/61 (40%), Gaps = 1/61 (1%)
Frame = +1
Query: 286 DAVKNCKLKNKERKIKPLLYTEEPLC-QDGFLACGDSTCIERGLFCNGEKDCGDGSDENS 462
D V +C + E+ EE C D F + C+ C+ DC D DE++
Sbjct: 922 DTVHDCDDGSDEKNCPISRRDEEFGCGSDKFTCDNGAKCLPLTWLCDSITDCMDSKDEHN 981
Query: 463 C 465
C
Sbjct: 982 C 982
>SB_43556| Best HMM Match : Ldl_recept_a (HMM E-Value=2.7e-11)
Length = 65
Score = 36.3 bits (80), Expect = 0.027
Identities = 15/40 (37%), Positives = 20/40 (50%)
Frame = +1
Query: 367 DGFLACGDSTCIERGLFCNGEKDCGDGSDENSCDIDNDPN 486
D C + CI C+ E DCGD SDE +C ++ N
Sbjct: 9 DTSFKCDNGRCISATWVCDTENDCGDNSDEMNCSKYDNKN 48
>SB_55149| Best HMM Match : Ldl_recept_a (HMM E-Value=2.6e-23)
Length = 190
Score = 36.3 bits (80), Expect = 0.027
Identities = 14/31 (45%), Positives = 16/31 (51%)
Frame = +1
Query: 373 FLACGDSTCIERGLFCNGEKDCGDGSDENSC 465
F D CI + C+GE DC D SDE C
Sbjct: 95 FKCVSDGKCIPKSWRCDGEMDCPDSSDEEGC 125
>SB_43823| Best HMM Match : MAM (HMM E-Value=0)
Length = 1724
Score = 36.3 bits (80), Expect = 0.027
Identities = 16/36 (44%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Frame = +1
Query: 361 CQDGFLACG-DSTCIERGLFCNGEKDCGDGSDENSC 465
CQ C D CI C+GE DC DG DE C
Sbjct: 338 CQSNEFYCSKDDRCINIFWKCDGESDCTDGEDEQGC 373
Score = 36.3 bits (80), Expect = 0.027
Identities = 15/35 (42%), Positives = 19/35 (54%)
Frame = +1
Query: 397 CIERGLFCNGEKDCGDGSDENSCDIDNDPNRAPPC 501
C+ R L C+G+ DC D SDE C + NR C
Sbjct: 1356 CLNRTLQCDGKPDCSDYSDEAHCRVRKSINRNVVC 1390
Score = 34.7 bits (76), Expect = 0.083
Identities = 15/36 (41%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Frame = +1
Query: 361 CQDGFLACGDST-CIERGLFCNGEKDCGDGSDENSC 465
C D C S CI+ C+G DC D SDE+ C
Sbjct: 1303 CNDDQFQCRASKICIKSSFVCDGVPDCNDHSDEDDC 1338
Score = 29.5 bits (63), Expect = 3.1
Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = +1
Query: 361 CQDGFLACGDST-CIERGLFCNGEKDCGDGSDEN 459
C + C +S C+++ C+ DCGDG+DE+
Sbjct: 120 CTANEVRCKNSGHCVQQQQVCDFTDDCGDGTDED 153
>SB_18178| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 489
Score = 35.5 bits (78), Expect = 0.048
Identities = 17/44 (38%), Positives = 21/44 (47%)
Frame = +1
Query: 349 EEPLCQDGFLACGDSTCIERGLFCNGEKDCGDGSDENSCDIDND 480
+ P + C CI C+G+ DCGD SDE SC ND
Sbjct: 355 DAPCKISSWFKCRSGVCIPPQWICDGKDDCGDRSDE-SCSWIND 397
Score = 33.1 bits (72), Expect = 0.25
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = +1
Query: 397 CIERGLFCNGEKDCGDGSDENSCDIDNDPNR 489
CI+ C+G+ +C D SDEN C +P+R
Sbjct: 285 CIDISYKCDGKPECADHSDENDCPPLINPDR 315
>SB_26126| Best HMM Match : Ldl_recept_b (HMM E-Value=3e-24)
Length = 652
Score = 35.5 bits (78), Expect = 0.048
Identities = 17/42 (40%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Frame = +1
Query: 355 PLCQDGFLACGDS-TCIERGLFCNGEKDCGDGSDEN-SCDID 474
P C G C + CI C+G +DC DG DE C+ID
Sbjct: 209 PPCMPGEFKCQSTGRCIPESKVCDGTRDCQDGEDEPLRCNID 250
>SB_18810| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 105
Score = 34.7 bits (76), Expect = 0.083
Identities = 15/36 (41%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Frame = +1
Query: 361 CQDGFLACGDST-CIERGLFCNGEKDCGDGSDENSC 465
C D C S CI+ C+G DC D SDE+ C
Sbjct: 6 CNDDQFQCRASKICIKSSFVCDGVPDCNDHSDEDDC 41
Score = 32.3 bits (70), Expect = 0.44
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = +1
Query: 397 CIERGLFCNGEKDCGDGSDENSC 465
C+ R L C+G+ DC D SDE C
Sbjct: 59 CLNRTLQCDGKPDCSDYSDEAHC 81
>SB_3253| Best HMM Match : Ldl_recept_a (HMM E-Value=0.00064)
Length = 48
Score = 34.3 bits (75), Expect = 0.11
Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 6/42 (14%)
Frame = +1
Query: 358 LCQDGFLACG-----DSTCIERGLFCNGEKDCG-DGSDENSC 465
LC G+ CG + +CI + L CNG DC G DE+ C
Sbjct: 6 LCPSGYFYCGTGPKGEISCINKALRCNGIYDCSVTGWDEDGC 47
>SB_22727| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 435
Score = 31.9 bits (69), Expect = 0.59
Identities = 13/35 (37%), Positives = 15/35 (42%)
Frame = +1
Query: 361 CQDGFLACGDSTCIERGLFCNGEKDCGDGSDENSC 465
C L C C+ C+G KDC G DE C
Sbjct: 311 CFTNELTCSSGRCVPSINLCDGVKDCEQGLDELRC 345
Score = 28.3 bits (60), Expect = 7.2
Identities = 11/35 (31%), Positives = 15/35 (42%)
Frame = +1
Query: 361 CQDGFLACGDSTCIERGLFCNGEKDCGDGSDENSC 465
C C CI C+ + +C D SDE+ C
Sbjct: 275 CASYEFQCTSGHCISGSSRCDSDYNCMDSSDEDGC 309
>SB_16967| Best HMM Match : Laminin_EGF (HMM E-Value=0)
Length = 1706
Score = 31.9 bits (69), Expect = 0.59
Identities = 17/64 (26%), Positives = 28/64 (43%), Gaps = 4/64 (6%)
Frame = +1
Query: 343 YTEEPLCQDGFLACGDSTCIERGLFCNGE----KDCGDGSDENSCDIDNDPNRAPPCDSC 510
YT +P+ F C +C +R FC+ E DC G+ C++ + + P C C
Sbjct: 992 YTRQPMGGTPFDRCVLCSCNDRSRFCHPETGVCTDCKIGTHGYRCELCTNNVQGPECVRC 1051
Query: 511 SVSF 522
+
Sbjct: 1052 KPQY 1055
>SB_20531| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 796
Score = 31.5 bits (68), Expect = 0.77
Identities = 11/32 (34%), Positives = 14/32 (43%)
Frame = +1
Query: 361 CQDGFLACGDSTCIERGLFCNGEKDCGDGSDE 456
C + C C+ C+G DC D SDE
Sbjct: 216 CSEEEFPCASGDCVPLTSVCDGSADCSDSSDE 247
>SB_17635| Best HMM Match : CUB (HMM E-Value=0)
Length = 630
Score = 31.5 bits (68), Expect = 0.77
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +1
Query: 382 CGDSTCIERGLFCNGEKDCGDGSDENSC 465
C + I+ C+G DCGD SDE++C
Sbjct: 424 CDNDNYIQCQWKCDGTDDCGDHSDEDNC 451
>SB_41869| Best HMM Match : Laminin_EGF (HMM E-Value=9.7e-23)
Length = 198
Score = 31.5 bits (68), Expect = 0.77
Identities = 17/64 (26%), Positives = 28/64 (43%), Gaps = 4/64 (6%)
Frame = +1
Query: 343 YTEEPLCQDGFLACGDSTCIERGLFCNGE----KDCGDGSDENSCDIDNDPNRAPPCDSC 510
YT +P+ F C +C +R FC+ E DC G+ C++ + + P C C
Sbjct: 70 YTRQPMGGTPFDRCVLCSCNDRSRFCHPETGVCTDCKIGTHGYRCELCTNYVQGPECVRC 129
Query: 511 SVSF 522
+
Sbjct: 130 KPQY 133
Score = 29.5 bits (63), Expect = 3.1
Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 4/57 (7%)
Frame = +1
Query: 343 YTEEPLCQDGFLACGDSTCIERGLFCNGE----KDCGDGSDENSCDIDNDPNRAPPC 501
YT +P+ F C +C +R FC+ E DC G+ C++ + + P C
Sbjct: 2 YTRQPMGGTPFDRCVLCSCNDRSRFCHPETGVCTDCKIGTHGYRCELCTNNVQGPEC 58
>SB_32904| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 477
Score = 31.5 bits (68), Expect = 0.77
Identities = 13/41 (31%), Positives = 18/41 (43%)
Frame = -3
Query: 541 SEQKQSGRTHCRNRMAELYLGRCQYHKNFHQIHRHSPFRRY 419
++ + G HC A L+L C H +H P RRY
Sbjct: 2 ADNRGLGFRHCNGMSAFLFLAACPCQHQRHTVHSAVPLRRY 42
>SB_17897| Best HMM Match : Ldl_recept_a (HMM E-Value=1.2e-14)
Length = 1217
Score = 31.5 bits (68), Expect = 0.77
Identities = 13/35 (37%), Positives = 15/35 (42%)
Frame = +1
Query: 361 CQDGFLACGDSTCIERGLFCNGEKDCGDGSDENSC 465
C L C C+ C+G KDC G DE C
Sbjct: 1140 CFTNELTCSSGRCVPSINLCDGVKDCEHGLDELRC 1174
Score = 28.3 bits (60), Expect = 7.2
Identities = 11/35 (31%), Positives = 15/35 (42%)
Frame = +1
Query: 361 CQDGFLACGDSTCIERGLFCNGEKDCGDGSDENSC 465
C C CI C+ + +C D SDE+ C
Sbjct: 1104 CASYEFQCASGHCISGSSRCDSDYNCMDRSDEDGC 1138
>SB_8478| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1033
Score = 31.5 bits (68), Expect = 0.77
Identities = 13/35 (37%), Positives = 15/35 (42%)
Frame = +1
Query: 361 CQDGFLACGDSTCIERGLFCNGEKDCGDGSDENSC 465
C L C C+ C+G KDC G DE C
Sbjct: 230 CFTNELTCSSGRCVPSINLCDGVKDCEHGLDELRC 264
Score = 28.3 bits (60), Expect = 7.2
Identities = 11/35 (31%), Positives = 15/35 (42%)
Frame = +1
Query: 361 CQDGFLACGDSTCIERGLFCNGEKDCGDGSDENSC 465
C C CI C+ + +C D SDE+ C
Sbjct: 194 CASYEFQCASGHCISGSSRCDSDYNCMDRSDEDGC 228
>SB_2014| Best HMM Match : MAM (HMM E-Value=0)
Length = 2282
Score = 30.7 bits (66), Expect = 1.4
Identities = 15/59 (25%), Positives = 24/59 (40%)
Frame = +1
Query: 289 AVKNCKLKNKERKIKPLLYTEEPLCQDGFLACGDSTCIERGLFCNGEKDCGDGSDENSC 465
A+ + + ++ PL C C CI C+G+ +C D SDE+ C
Sbjct: 185 AIDDIMITTEKCATSPLYAAPGYKCAPYEFQCTSGHCISGSSRCDGDYNCMDRSDEDGC 243
Score = 30.7 bits (66), Expect = 1.4
Identities = 12/35 (34%), Positives = 16/35 (45%)
Frame = +1
Query: 361 CQDGFLACGDSTCIERGLFCNGEKDCGDGSDENSC 465
C L C C++ C+G +DC G DE C
Sbjct: 245 CFTNELTCSSGRCVQSINLCDGVRDCEYGLDELRC 279
>SB_34641| Best HMM Match : Mucin (HMM E-Value=4.3)
Length = 199
Score = 30.3 bits (65), Expect = 1.8
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = +3
Query: 93 RRQRKMKAWNKNYARTRTPANGSGWW 170
RR K KAW ART P G+ +W
Sbjct: 44 RRDTKHKAWTTRSARTWVPVTGTPYW 69
>SB_33807| Best HMM Match : RNA_pol (HMM E-Value=2.7e-10)
Length = 469
Score = 29.5 bits (63), Expect = 3.1
Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 3/44 (6%)
Frame = +1
Query: 382 CGDSTCIERGLFCNGEKDCGDGSD---ENSCDIDNDPNRAPPCD 504
C D + G C+G C G D ++SCD+ D + CD
Sbjct: 412 CDDDDSCDVGKDCDGYDSCDVGEDCEGDDSCDVGEDCDGNDSCD 455
>SB_28040| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 391
Score = 29.1 bits (62), Expect = 4.1
Identities = 12/35 (34%), Positives = 14/35 (40%)
Frame = +1
Query: 361 CQDGFLACGDSTCIERGLFCNGEKDCGDGSDENSC 465
C L C C+ C+G KDC DE C
Sbjct: 267 CFTNELTCSSGRCVPSINLCDGVKDCEQDLDELRC 301
Score = 28.3 bits (60), Expect = 7.2
Identities = 11/35 (31%), Positives = 15/35 (42%)
Frame = +1
Query: 361 CQDGFLACGDSTCIERGLFCNGEKDCGDGSDENSC 465
C C CI C+ + +C D SDE+ C
Sbjct: 231 CASYEFQCASGHCISGSSRCDSDYNCMDRSDEDGC 265
>SB_35006| Best HMM Match : PT (HMM E-Value=3.4)
Length = 325
Score = 28.7 bits (61), Expect = 5.5
Identities = 30/105 (28%), Positives = 44/105 (41%), Gaps = 3/105 (2%)
Frame = +1
Query: 229 YTLPGRFVLDIEKQTCDWKDAVKNCKLKNKERKIKPLLYTEEPLCQDGF--LACGDSTCI 402
Y P ++D+EK K+ + N + IK L + D L G+
Sbjct: 16 YAKPEEELVDLEKDA-SLKETIANLAELTDDELIK-LFFNANTAADDNLNLLPVGED--- 70
Query: 403 ERGLFCNGEKDCGDGSDENSCDIDNDPNRAPPCDS-CSVSFLTAS 534
F N D D + +S D+D P+ +P DS S SFLT+S
Sbjct: 71 ----FANLSADI-DNTSFSSADVDETPSLSPCSDSTASDSFLTSS 110
>SB_23397| Best HMM Match : DSL (HMM E-Value=0.00011)
Length = 331
Score = 28.7 bits (61), Expect = 5.5
Identities = 17/42 (40%), Positives = 21/42 (50%), Gaps = 4/42 (9%)
Frame = +1
Query: 208 YCLGNTSYTLPGRFVLDIE--KQTC--DWKDAVKNCKLKNKE 321
YC+ S L G +V D ++ C W DAV NC K KE
Sbjct: 253 YCVSRDS-DLEGHYVCDYVQGRKVCREGWYDAVSNCTKKKKE 293
>SB_45039| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 235
Score = 28.7 bits (61), Expect = 5.5
Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Frame = +1
Query: 421 NGEKDC-GDGSDENSCDIDNDPNRAPPCDSCSVSFLTASAPRTAQ*SPAT 567
+G KDC G S+ C I + PP + + T +P+T Q SP T
Sbjct: 185 HGGKDCTGPNSESMDCHILCPETQPPPPTTQPSTNTTQPSPQTTQPSPQT 234
>SB_16878| Best HMM Match : Keratin_B2 (HMM E-Value=0.19)
Length = 413
Score = 28.7 bits (61), Expect = 5.5
Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Frame = +1
Query: 394 TCIERGLFCNGEKDCGDGSDENSCDIDNDPNRAPPCD--SCSV 516
T I R +C+ + C GS N +N +P CD SCS+
Sbjct: 18 TKIVRAEYCSSDFSCNYGSGRNRICCNNHCTYSPTCDGYSCSM 60
>SB_50139| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2211
Score = 28.3 bits (60), Expect = 7.2
Identities = 13/28 (46%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Frame = +1
Query: 421 NGEKDC-GDGSDENSCDIDNDPNRAPPC 501
NG KDC GD +E C+ D P + PC
Sbjct: 472 NGGKDCVGDAKEEKDCNTDKCPPK--PC 497
>SB_54415| Best HMM Match : TSP_1 (HMM E-Value=6.8e-21)
Length = 612
Score = 28.3 bits (60), Expect = 7.2
Identities = 13/28 (46%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Frame = +1
Query: 421 NGEKDC-GDGSDENSCDIDNDPNRAPPC 501
NG KDC GD +E C+ D P + PC
Sbjct: 134 NGGKDCVGDAKEEKDCNTDKCPPK--PC 159
>SB_32130| Best HMM Match : TSP_1 (HMM E-Value=0)
Length = 446
Score = 28.3 bits (60), Expect = 7.2
Identities = 13/28 (46%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Frame = +1
Query: 421 NGEKDC-GDGSDENSCDIDNDPNRAPPC 501
NG KDC GD +E C+ D P + PC
Sbjct: 387 NGGKDCVGDAKEEKDCNTDKCPPK--PC 412
>SB_27138| Best HMM Match : Ebp2 (HMM E-Value=1.8)
Length = 841
Score = 28.3 bits (60), Expect = 7.2
Identities = 14/61 (22%), Positives = 35/61 (57%), Gaps = 6/61 (9%)
Frame = +3
Query: 603 TFDDAINNNNIELYKEI--FNGKRKNPN----GCDIKATYFVSHKYTNYSAVQETQPQGY 764
T+ +++N ++I++Y I G + P GC++K ++Y +++ ++ +P+G+
Sbjct: 525 TYWESVNASDIKIYLAIRLLQGIKSVPGEKHQGCNVKEQVRKINQYLHFNDAEKAKPRGH 584
Query: 765 E 767
E
Sbjct: 585 E 585
>SB_21938| Best HMM Match : Big_2 (HMM E-Value=0.69)
Length = 651
Score = 28.3 bits (60), Expect = 7.2
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = +3
Query: 651 IFNGKRKNPNGCDIKATYFVS 713
+FN K NP+ C +K+TY +S
Sbjct: 118 VFNWKSNNPDVCHLKSTYHLS 138
>SB_14947| Best HMM Match : TSP_1 (HMM E-Value=6.8e-21)
Length = 666
Score = 28.3 bits (60), Expect = 7.2
Identities = 13/28 (46%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Frame = +1
Query: 421 NGEKDC-GDGSDENSCDIDNDPNRAPPC 501
NG KDC GD +E C+ D P + PC
Sbjct: 119 NGGKDCVGDAKEEKDCNTDKCPPK--PC 144
>SB_5403| Best HMM Match : TSP_1 (HMM E-Value=0)
Length = 684
Score = 28.3 bits (60), Expect = 7.2
Identities = 13/28 (46%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Frame = +1
Query: 421 NGEKDC-GDGSDENSCDIDNDPNRAPPC 501
NG KDC GD +E C+ D P + PC
Sbjct: 503 NGGKDCVGDAKEEKDCNTDKCPPK--PC 528
>SB_3455| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 587
Score = 27.9 bits (59), Expect = 9.5
Identities = 11/39 (28%), Positives = 23/39 (58%)
Frame = -3
Query: 469 YHKNFHQIHRHSPFRRYRKDRVQCK*SRRKRGSHLDRVV 353
+H NF + P R+++K+ Q S+ +GS ++R++
Sbjct: 179 HHTNFTTVVNFPPTRKHKKNTTQLNHSKPDKGSIVERLL 217
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,182,226
Number of Sequences: 59808
Number of extensions: 528324
Number of successful extensions: 2412
Number of sequences better than 10.0: 64
Number of HSP's better than 10.0 without gapping: 1984
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2398
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2083999566
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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