Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20540
         (589 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC10F6.03c |||CTP synthase |Schizosaccharomyces pombe|chr 1|||...    27   1.5  
SPBPB10D8.02c |||arylsulfatase |Schizosaccharomyces pombe|chr 2|...    25   6.2  
SPAC22A12.12c |||exosome subunit Rrp40 |Schizosaccharomyces pomb...    25   8.2  
SPAC11D3.07c |||transcription factor|Schizosaccharomyces pombe|c...    25   8.2  

>SPAC10F6.03c |||CTP synthase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 600

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 17/51 (33%), Positives = 25/51 (49%)
 Frame = +3

Query: 366 SVGXGAWPFLVGAPICLVNSGNERDSSLLNRRRYLGVRGLVSRNSLTTIKI 518
           ++  G    L    + ++N G E D  L N  RYL V  L   N++TT K+
Sbjct: 44  NIDAGTMSPLEHGEVFVLNDGGEVDLDLGNYERYLNVT-LTHDNNITTGKV 93


>SPBPB10D8.02c |||arylsulfatase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 554

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = -3

Query: 380 TTTNRIKKELLICQSFRCPGXVRFPVLSQIKP 285
           T  +R+ K  +     RCP  +R+P L  IKP
Sbjct: 375 TAPSRLSKGFITEGGIRCPAIIRYPPL--IKP 404


>SPAC22A12.12c |||exosome subunit Rrp40 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 240

 Score = 25.0 bits (52), Expect = 8.2
 Identities = 13/29 (44%), Positives = 15/29 (51%)
 Frame = +1

Query: 160 TLLQWLGGQLPGNQRFXTPGGVWLQS*NL 246
           TLLQ LG  +P        G VW+ S NL
Sbjct: 180 TLLQTLGSYIPFEIAVGMNGRVWVNSENL 208


>SPAC11D3.07c |||transcription factor|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 603

 Score = 25.0 bits (52), Expect = 8.2
 Identities = 12/41 (29%), Positives = 22/41 (53%)
 Frame = -3

Query: 404 CTN*ERPCTTTNRIKKELLICQSFRCPGXVRFPVLSQIKPQ 282
           CT  +  C  +NR +++ L+ +S    G +  PV +  KP+
Sbjct: 27  CTLFQADCHYSNRARRKRLVQRSKETFGGITLPVKNIEKPE 67


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,092,773
Number of Sequences: 5004
Number of extensions: 37588
Number of successful extensions: 91
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 91
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 254167452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)