Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20540
(589 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_17617| Best HMM Match : No HMM Matches (HMM E-Value=.) 67 9e-12
SB_57691| Best HMM Match : No HMM Matches (HMM E-Value=.) 60 1e-09
SB_6465| Best HMM Match : No HMM Matches (HMM E-Value=.) 60 1e-09
SB_2383| Best HMM Match : No HMM Matches (HMM E-Value=.) 60 1e-09
SB_27342| Best HMM Match : No HMM Matches (HMM E-Value=.) 60 1e-09
SB_58054| Best HMM Match : No HMM Matches (HMM E-Value=.) 58 4e-09
SB_1204| Best HMM Match : No HMM Matches (HMM E-Value=.) 48 6e-06
SB_33624| Best HMM Match : No HMM Matches (HMM E-Value=.) 48 6e-06
SB_6881| Best HMM Match : No HMM Matches (HMM E-Value=.) 44 7e-05
SB_26327| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 4e-04
SB_1546| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 4e-04
SB_13730| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 4e-04
SB_56573| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.5
SB_35857| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.5
SB_19517| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.5
>SB_17617| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 67.3 bits (157), Expect = 9e-12
Identities = 32/40 (80%), Positives = 34/40 (85%)
Frame = +1
Query: 19 SWIVARRTSAKAFAKGVFINQERKLEVRRRLDTALVLTVN 138
SWI RRT+AKAFAK VFINQERKLE RRR DT LVLT+N
Sbjct: 4 SWIYERRTTAKAFAKNVFINQERKLEDRRRSDTVLVLTIN 43
>SB_57691| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 60.5 bits (140), Expect = 1e-09
Identities = 29/35 (82%), Positives = 31/35 (88%)
Frame = +1
Query: 34 RRTSAKAFAKGVFINQERKLEVRRRLDTALVLTVN 138
RRT+AKAFAK VFINQERKLE RRR DT LVLT+N
Sbjct: 9 RRTTAKAFAKNVFINQERKLEDRRRSDTVLVLTIN 43
>SB_6465| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 60.5 bits (140), Expect = 1e-09
Identities = 29/35 (82%), Positives = 31/35 (88%)
Frame = +1
Query: 34 RRTSAKAFAKGVFINQERKLEVRRRLDTALVLTVN 138
RRT+AKAFAK VFINQERKLE RRR DT LVLT+N
Sbjct: 9 RRTTAKAFAKNVFINQERKLEDRRRSDTVLVLTIN 43
>SB_2383| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 60.5 bits (140), Expect = 1e-09
Identities = 29/35 (82%), Positives = 31/35 (88%)
Frame = +1
Query: 34 RRTSAKAFAKGVFINQERKLEVRRRLDTALVLTVN 138
RRT+AKAFAK VFINQERKLE RRR DT LVLT+N
Sbjct: 9 RRTTAKAFAKNVFINQERKLEDRRRSDTVLVLTIN 43
>SB_27342| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 48
Score = 60.5 bits (140), Expect = 1e-09
Identities = 29/35 (82%), Positives = 31/35 (88%)
Frame = +1
Query: 34 RRTSAKAFAKGVFINQERKLEVRRRLDTALVLTVN 138
RRT+AKAFAK VFINQERKLE RRR DT LVLT+N
Sbjct: 11 RRTTAKAFAKNVFINQERKLEDRRRSDTVLVLTIN 45
>SB_58054| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 65
Score = 58.4 bits (135), Expect = 4e-09
Identities = 28/34 (82%), Positives = 30/34 (88%)
Frame = +1
Query: 37 RTSAKAFAKGVFINQERKLEVRRRLDTALVLTVN 138
RT+AKAFAK VFINQERKLE RRR DT LVLT+N
Sbjct: 29 RTTAKAFAKNVFINQERKLEDRRRSDTVLVLTIN 62
>SB_1204| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 99
Score = 48.0 bits (109), Expect = 6e-06
Identities = 23/27 (85%), Positives = 24/27 (88%)
Frame = +1
Query: 37 RTSAKAFAKGVFINQERKLEVRRRLDT 117
RT+AKAFAK VFINQERKLE RRR DT
Sbjct: 2 RTTAKAFAKNVFINQERKLEDRRRSDT 28
>SB_33624| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 48.0 bits (109), Expect = 6e-06
Identities = 24/36 (66%), Positives = 29/36 (80%), Gaps = 1/36 (2%)
Frame = +1
Query: 34 RRTS-AKAFAKGVFINQERKLEVRRRLDTALVLTVN 138
R+T+ ++ AK VFINQERKLE RRR DT LVLT+N
Sbjct: 8 RKTNYCESIAKNVFINQERKLEDRRRSDTVLVLTIN 43
Score = 29.5 bits (63), Expect = 2.1
Identities = 14/27 (51%), Positives = 16/27 (59%)
Frame = +3
Query: 12 VKFLDRRKTNISESICQRCFHQSRTKV 92
VKFLD RKTN ESI + F K+
Sbjct: 2 VKFLDLRKTNYCESIAKNVFINQERKL 28
>SB_6881| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 44.4 bits (100), Expect = 7e-05
Identities = 22/36 (61%), Positives = 28/36 (77%), Gaps = 1/36 (2%)
Frame = +1
Query: 34 RRTS-AKAFAKGVFINQERKLEVRRRLDTALVLTVN 138
R+T+ ++ + VFINQERKLE RRR DT LVLT+N
Sbjct: 8 RKTNYCESICQDVFINQERKLEDRRRSDTVLVLTIN 43
Score = 33.9 bits (74), Expect = 0.099
Identities = 16/27 (59%), Positives = 17/27 (62%)
Frame = +3
Query: 12 VKFLDRRKTNISESICQRCFHQSRTKV 92
VKFLD RKTN ESICQ F K+
Sbjct: 2 VKFLDLRKTNYCESICQDVFINQERKL 28
>SB_26327| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 41.9 bits (94), Expect = 4e-04
Identities = 21/36 (58%), Positives = 27/36 (75%), Gaps = 1/36 (2%)
Frame = +1
Query: 34 RRTS-AKAFAKGVFINQERKLEVRRRLDTALVLTVN 138
R+T+ ++ + FINQERKLE RRR DT LVLT+N
Sbjct: 8 RKTNYCESICQECFINQERKLEDRRRSDTVLVLTIN 43
Score = 29.9 bits (64), Expect = 1.6
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = +3
Query: 15 KFLDRRKTNISESICQRCFHQSRTKV 92
+ L RKTN ESICQ CF K+
Sbjct: 3 EILGFRKTNYCESICQECFINQERKL 28
>SB_1546| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 41.9 bits (94), Expect = 4e-04
Identities = 21/36 (58%), Positives = 27/36 (75%), Gaps = 1/36 (2%)
Frame = +1
Query: 34 RRTS-AKAFAKGVFINQERKLEVRRRLDTALVLTVN 138
R+T+ ++ + FINQERKLE RRR DT LVLT+N
Sbjct: 8 RKTNYCESICQECFINQERKLEDRRRSDTVLVLTIN 43
Score = 38.7 bits (86), Expect = 0.003
Identities = 17/27 (62%), Positives = 18/27 (66%)
Frame = +3
Query: 12 VKFLDRRKTNISESICQRCFHQSRTKV 92
VKFLD RKTN ESICQ CF K+
Sbjct: 2 VKFLDLRKTNYCESICQECFINQERKL 28
>SB_13730| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 41.9 bits (94), Expect = 4e-04
Identities = 21/36 (58%), Positives = 27/36 (75%), Gaps = 1/36 (2%)
Frame = +1
Query: 34 RRTS-AKAFAKGVFINQERKLEVRRRLDTALVLTVN 138
R+T+ ++ + FINQERKLE RRR DT LVLT+N
Sbjct: 8 RKTNYCESICQECFINQERKLEDRRRSDTVLVLTIN 43
Score = 38.7 bits (86), Expect = 0.003
Identities = 17/27 (62%), Positives = 18/27 (66%)
Frame = +3
Query: 12 VKFLDRRKTNISESICQRCFHQSRTKV 92
VKFLD RKTN ESICQ CF K+
Sbjct: 2 VKFLDLRKTNYCESICQECFINQERKL 28
>SB_56573| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 641
Score = 27.9 bits (59), Expect = 6.5
Identities = 12/29 (41%), Positives = 13/29 (44%)
Frame = -3
Query: 302 LSQIKPQAPLLVVPXXNSFKFQLCNHTPP 216
+ Q K P LV SF C HTPP
Sbjct: 453 IPQTKTHGPSLVKELSESFSSVFCKHTPP 481
>SB_35857| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2680
Score = 27.9 bits (59), Expect = 6.5
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = -3
Query: 233 CNHTPPGVXNLWFPGSCPPSHCSNVGGSLDD 141
C+ PG + PGSC P +C N+ GSL D
Sbjct: 854 CDRCMPG--SYGGPGSCKPCNC-NMAGSLSD 881
>SB_19517| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1696
Score = 27.9 bits (59), Expect = 6.5
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = -3
Query: 200 WFPGSCPPSHCSNVGGSLDDIFTVRTRAVS 111
W+PG CPP C+ +L + TV + +S
Sbjct: 80 WYPGYCPPHKCAG-RNTLQECCTVYSPEIS 108
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,418,301
Number of Sequences: 59808
Number of extensions: 307179
Number of successful extensions: 649
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 613
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 649
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1422302661
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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