Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20540
         (589 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X98600-1|CAA67197.1|  511|Caenorhabditis elegans alpha nicotinic...    29   1.9  
X98599-1|CAA67196.1|  511|Caenorhabditis elegans alpha nicotinic...    29   1.9  
U88175-2|AAB42282.2|  511|Caenorhabditis elegans Uncoordinated p...    29   1.9  
U23517-11|AAY44017.1|  288|Caenorhabditis elegans Hypothetical p...    29   2.4  
U23515-13|AAK21453.1|  823|Caenorhabditis elegans Hypothetical p...    27   9.9  
AC006675-6|AAK84556.2|  433|Caenorhabditis elegans Nuclear hormo...    27   9.9  

>X98600-1|CAA67197.1|  511|Caenorhabditis elegans alpha nicotinic
           acetylcholine receptorsubunit protein.
          Length = 511

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 23/73 (31%), Positives = 34/73 (46%), Gaps = 9/73 (12%)
 Frame = +3

Query: 384 WPFLVGAPICL----VNSGNER-----DSSLLNRRRYLGVRGLVSRNSLTTIKILLRXTG 536
           W FL+    C+    +  GNE      D  ++N  R+   R   S N   TIK+ LR + 
Sbjct: 5   WLFLLLLLFCISFIKLTEGNEDAKRLYDDLMVNYNRHR--RPSTSPNKPLTIKLKLRLSQ 62

Query: 537 VFEPHEIEQ*QVC 575
           + + HEI+Q   C
Sbjct: 63  IIDVHEIDQIMTC 75


>X98599-1|CAA67196.1|  511|Caenorhabditis elegans alpha nicotinic
           acetylcholine receptorsubunit protein.
          Length = 511

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 23/73 (31%), Positives = 34/73 (46%), Gaps = 9/73 (12%)
 Frame = +3

Query: 384 WPFLVGAPICL----VNSGNER-----DSSLLNRRRYLGVRGLVSRNSLTTIKILLRXTG 536
           W FL+    C+    +  GNE      D  ++N  R+   R   S N   TIK+ LR + 
Sbjct: 5   WLFLLLLLFCISFIKLTEGNEDAKRLYDDLMVNYNRHR--RPSTSPNKPLTIKLKLRLSQ 62

Query: 537 VFEPHEIEQ*QVC 575
           + + HEI+Q   C
Sbjct: 63  IIDVHEIDQIMTC 75


>U88175-2|AAB42282.2|  511|Caenorhabditis elegans Uncoordinated
           protein 38 protein.
          Length = 511

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 23/73 (31%), Positives = 34/73 (46%), Gaps = 9/73 (12%)
 Frame = +3

Query: 384 WPFLVGAPICL----VNSGNER-----DSSLLNRRRYLGVRGLVSRNSLTTIKILLRXTG 536
           W FL+    C+    +  GNE      D  ++N  R+   R   S N   TIK+ LR + 
Sbjct: 5   WLFLLLLLFCISFIKLTEGNEDAKRLYDDLMVNYNRHR--RPSTSPNKPLTIKLKLRLSQ 62

Query: 537 VFEPHEIEQ*QVC 575
           + + HEI+Q   C
Sbjct: 63  IIDVHEIDQIMTC 75


>U23517-11|AAY44017.1|  288|Caenorhabditis elegans Hypothetical
           protein D1022.9 protein.
          Length = 288

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +3

Query: 270 QEWSLRLNLTQHGKSHXARTPEGLTD*QLFLD 365
           Q W L L    H K + ARTP  + D ++F++
Sbjct: 59  QYWPLMLARFSHEKPYVARTPAAIADAEMFIN 90


>U23515-13|AAK21453.1|  823|Caenorhabditis elegans Hypothetical
           protein R144.2a protein.
          Length = 823

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = +3

Query: 267 HQEWSLRLNLTQHGKSHXARTP 332
           H +W ++ NL +HG ++ A  P
Sbjct: 696 HMDWHVKQNLARHGSNNSAAVP 717


>AC006675-6|AAK84556.2|  433|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 98 protein.
          Length = 433

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +3

Query: 21  LDRRKTNISESICQRCFHQSRTKVRGS 101
           L+     +S  ICQ CFHQ   K++G+
Sbjct: 331 LEPTHEELSYMICQLCFHQVGKKLQGN 357


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,914,512
Number of Sequences: 27780
Number of extensions: 226271
Number of successful extensions: 483
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 478
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 483
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1237082886
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)