Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20540
         (589 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    22   3.9  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   3.9  
AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone este...    22   5.1  
AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.           22   5.1  

>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 13/41 (31%), Positives = 19/41 (46%)
 Frame = +1

Query: 16  NSWIVARRTSAKAFAKGVFINQERKLEVRRRLDTALVLTVN 138
           N  +VAR   A  F   V IN+     +  R+   L+ T+N
Sbjct: 351 NQAVVARHDEAMIFPADVKINRGLXWIISDRMPVFLLXTLN 391


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = +3

Query: 27   RRKTNISESICQRCFHQ 77
            RR+ N++E++C   F Q
Sbjct: 966  RRRLNVNETVCSDYFSQ 982


>AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone
           esterase protein.
          Length = 567

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = +3

Query: 387 PFLVGAPICLVNSGNERD 440
           PF+   PI ++NSG+ +D
Sbjct: 314 PFIDRTPIEIINSGDVQD 331


>AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.
          Length = 567

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = +3

Query: 387 PFLVGAPICLVNSGNERD 440
           PF+   PI ++NSG+ +D
Sbjct: 314 PFIDRTPIEIINSGDVQD 331


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 146,207
Number of Sequences: 438
Number of extensions: 2632
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17115420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)