Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20540
         (589 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g22790.1 68415.m02703 expressed protein ; expression supporte...    29   1.7  
At3g42120.1 68416.m04325 hypothetical protein                          29   2.3  
At4g10890.1 68417.m01772 expressed protein                             29   3.0  
At3g17465.1 68416.m02230 ribosomal protein L3 family protein           28   4.0  
At2g35170.1 68415.m04314 MORN (Membrane Occupation and Recogniti...    27   7.0  
At1g19150.1 68414.m02384 chlorophyll A-B binding protein, putati...    27   7.0  
At3g51120.1 68416.m05598 zinc finger (CCCH-type) family protein ...    27   9.3  
At3g22790.1 68416.m02873 kinase interacting family protein simil...    27   9.3  

>At2g22790.1 68415.m02703 expressed protein ; expression supported
           by MPSS
          Length = 325

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = -3

Query: 299 SQIKPQAPLLVVPXXNSFKFQLCNHTPPGVXN 204
           S + P +P+      N FK Q  NH  PG+ N
Sbjct: 23  SSVNPSSPVYYKTIVNHFKSQTGNHVSPGLTN 54


>At3g42120.1 68416.m04325 hypothetical protein
          Length = 409

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 19/61 (31%), Positives = 26/61 (42%), Gaps = 2/61 (3%)
 Frame = -3

Query: 368 RIKKELLICQSFRCPGXVRFPVLSQIKPQAPLLVVPXXNSFKFQLCNHTPPGVXN--LWF 195
           +++ E LI   FR       PV +   P APLL+ P     ++      PP   N  L F
Sbjct: 268 QVEPEFLIRAGFRVEFTTDTPVTTVTSPTAPLLLDPPPKRLRYSSPPPKPPDFINKSLKF 327

Query: 194 P 192
           P
Sbjct: 328 P 328


>At4g10890.1 68417.m01772 expressed protein
          Length = 527

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = +3

Query: 30  RKTNISESICQRCFHQS-RTKVRGSKAIRYRPSSNRKYVI 146
           ++T I   +C RC+H S R K+R S   R   S++   ++
Sbjct: 194 KQTKICSRVCSRCYHYSMRQKLRHSLHTRILKSNSENAIL 233


>At3g17465.1 68416.m02230 ribosomal protein L3 family protein
          Length = 324

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 18/62 (29%), Positives = 27/62 (43%), Gaps = 1/62 (1%)
 Frame = +1

Query: 85  RKLEVRRRLDTALVLTVNMSSSDPPTLLQWLGGQLPGNQ-RFXTPGGVWLQS*NLKELXX 261
           RK+  R   D   V  V +   DP   L W+ GQ+PG +  F      W +  ++ +L  
Sbjct: 234 RKMAGRMGADQRTVKNVWVYKIDPARNLMWVRGQVPGAEGNFVFIKDAWCKKPDISKLPF 293

Query: 262 GT 267
            T
Sbjct: 294 PT 295


>At2g35170.1 68415.m04314 MORN (Membrane Occupation and Recognition
           Nexus) repeat-containing protein
           /phosphatidylinositol-4-phosphate 5-kinase-related low
           similarity to phosphatidylinositol-4-phosphate 5-kinase
           AtPIP5K1 [Arabidopsis thaliana] GI:3702691; contains
           Pfam profile PF02493: MORN repeat
          Length = 484

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 20/64 (31%), Positives = 26/64 (40%), Gaps = 4/64 (6%)
 Frame = +1

Query: 106 RLDTALVLT---VNMSSSDPPT-LLQWLGGQLPGNQRFXTPGGVWLQS*NLKELXXGTTR 273
           RL  A +LT      SSS P T  + W  G  P  +   T  G W+Q     ++  G   
Sbjct: 177 RLFVARLLTFIPARFSSSQPSTDRVVWSIGSKPVAENNKTNSGSWVQKYGTNDMYEGEFH 236

Query: 274 SGAC 285
            G C
Sbjct: 237 RGKC 240


>At1g19150.1 68414.m02384 chlorophyll A-B binding protein, putative
           / LHCI type II, putative very strong similarity to PSI
           type II chlorophyll a/b-binding protein Lhca2*1
           GI:541565 from [Arabidopsis thaliana]; contains Pfam
           profile: PF00504 chlorophyll A-B binding protein
          Length = 270

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 14/32 (43%), Positives = 15/32 (46%)
 Frame = -3

Query: 272 LVVPXXNSFKFQLCNHTPPGVXNLWFPGSCPP 177
           LVV         +C   PP    LWFPGS PP
Sbjct: 45  LVVVRAGKEVSSVCEPLPPD-RPLWFPGSSPP 75


>At3g51120.1 68416.m05598 zinc finger (CCCH-type) family protein
           contains Pfam domain, PF00642: Zinc finger
           C-x8-C-x5-C-x3-H type (and similar)
          Length = 1230

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 16/39 (41%), Positives = 19/39 (48%)
 Frame = +1

Query: 103 RRLDTALVLTVNMSSSDPPTLLQWLGGQLPGNQRFXTPG 219
           R LD A+  T    +SD PTL   L G+ P N     PG
Sbjct: 215 RALDVAVNGTKRRRTSDSPTLPNKLDGKNPSNILKKAPG 253


>At3g22790.1 68416.m02873 kinase interacting family protein similar
           to kinase interacting protein 1 (GI:13936326) [Petunia
           integrifolia]
          Length = 1694

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 10/14 (71%), Positives = 11/14 (78%)
 Frame = -1

Query: 289 SRRLHSWWCXSXIP 248
           SRRL+SWW  S IP
Sbjct: 9   SRRLYSWWWDSHIP 22


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,333,589
Number of Sequences: 28952
Number of extensions: 209667
Number of successful extensions: 457
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 445
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 457
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1161268208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)