Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20539
         (684 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein pr...    24   1.0  
AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1 ...    24   1.0  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    24   1.3  
AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain tran...    24   1.3  
AF230313-1|AAF64147.1|  210|Tribolium castaneum labial protein p...    24   1.3  
AF230312-1|AAF64146.1|  253|Tribolium castaneum labial protein p...    24   1.3  
DQ855506-1|ABH88193.1|  124|Tribolium castaneum chemosensory pro...    22   5.4  

>AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein
           protein.
          Length = 392

 Score = 24.2 bits (50), Expect = 1.0
 Identities = 11/35 (31%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
 Frame = +3

Query: 258 YPSSNW-CPKLSKHKCVMSGETPIQSGDGLHTPAY 359
           YP++   CP++       +G TP     GL +P+Y
Sbjct: 166 YPANEISCPQVQWSATPQAGSTPTYQTQGLLSPSY 200


>AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1
           protein protein.
          Length = 371

 Score = 24.2 bits (50), Expect = 1.0
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -1

Query: 402 PSVSPY*AATSSTRGTPAYEARPPTVS 322
           P+ +P   AT +   TP+  A PPTV+
Sbjct: 211 PAAAPRSVATPTGIPTPSTSASPPTVN 237


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -2

Query: 668 PTSMYPVESLVWRLHGRAL 612
           P + +PV+S+VW   GR L
Sbjct: 533 PFAGHPVDSVVWERDGRQL 551


>AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain
           transcription factor Labialprotein.
          Length = 353

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 11/43 (25%), Positives = 15/43 (34%)
 Frame = +1

Query: 475 PPLQYQRRCSSLHGVHNTLSRSPHARAHD*HLHFAKHRSSRQL 603
           PP+ +Q         H  +    H    D H H   H +  QL
Sbjct: 96  PPINHQNYNEPYQRTHENMLLRHHEEVADGHQHHFLHENKYQL 138


>AF230313-1|AAF64147.1|  210|Tribolium castaneum labial protein
           protein.
          Length = 210

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 11/43 (25%), Positives = 15/43 (34%)
 Frame = +1

Query: 475 PPLQYQRRCSSLHGVHNTLSRSPHARAHD*HLHFAKHRSSRQL 603
           PP+ +Q         H  +    H    D H H   H +  QL
Sbjct: 96  PPINHQNYNEPYQRTHENMLLRHHEEVADGHQHHFLHENKYQL 138


>AF230312-1|AAF64146.1|  253|Tribolium castaneum labial protein
           protein.
          Length = 253

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 11/43 (25%), Positives = 15/43 (34%)
 Frame = +1

Query: 475 PPLQYQRRCSSLHGVHNTLSRSPHARAHD*HLHFAKHRSSRQL 603
           PP+ +Q         H  +    H    D H H   H +  QL
Sbjct: 96  PPINHQNYNEPYQRTHENMLLRHHEEVADGHQHHFLHENKYQL 138


>DQ855506-1|ABH88193.1|  124|Tribolium castaneum chemosensory
           protein 20 protein.
          Length = 124

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = +3

Query: 162 QKEGLSCNLFRYVGLVSQYWWKQLPLRF 245
           QK+G    + +++    Q WWKQL  ++
Sbjct: 81  QKQGAK-TVIQHLYKNKQDWWKQLEAKY 107


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 171,817
Number of Sequences: 336
Number of extensions: 3853
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17906060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)