Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20539
         (684 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    27   1.9  
SPAC5H10.11 |gmh1||alpha-1,2-galactosyltransferase Gmh1|Schizosa...    27   3.3  
SPAC22F3.10c |gcs1|apd1|glutamate-cysteine ligase Gcs1 |Schizosa...    25   7.7  

>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 3699

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
 Frame = -3

Query: 511 EATSISFGTAVGAGFNCTSTIATIAKPES-RADVLLEAFSFALLSCNFLHERYAGV*SP 338
           E TS++  T +   F C   +A I   +S R  VLL  F  A ++ N   E+ A V  P
Sbjct: 689 EVTSVNC-TGIVLSF-CCDNLAKIGSGQSTRVSVLLRLFKLAFMTVNVFPEKNAEVLRP 745


>SPAC5H10.11 |gmh1||alpha-1,2-galactosyltransferase
           Gmh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 329

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 12/42 (28%), Positives = 20/42 (47%)
 Frame = +3

Query: 204 LVSQYWWKQLPLRFTRRRYPSSNWCPKLSKHKCVMSGETPIQ 329
           +V   W K   +  T R+YPS+ W   L +   +M+    +Q
Sbjct: 132 VVPPVWGKMPAILQTMRKYPSAKWIWWLDQDALIMNKNLSLQ 173


>SPAC22F3.10c |gcs1|apd1|glutamate-cysteine ligase Gcs1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 669

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = +2

Query: 410 QNICPTFRFRYGGYGRSTIKSSPHCSTKGD 499
           QN  PTF   YG Y   +   +P+ ST  D
Sbjct: 144 QNAVPTFHPEYGRYMLESTPGAPYGSTLKD 173


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,960,350
Number of Sequences: 5004
Number of extensions: 60892
Number of successful extensions: 147
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)