Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20539
         (684 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0385 + 2783387-2783695,2784149-2785082,2785206-2785309,278...    32   0.49 
04_03_0767 + 19389337-19389381,19390586-19390643,19390720-193907...    31   0.64 
03_05_0231 - 22170343-22172004,22172225-22172449                       31   0.85 
07_03_1676 + 28584269-28584471,28585265-28585755,28587253-285873...    31   1.1  
07_01_0387 + 2902957-2904705                                           29   2.6  
10_08_0348 + 17051521-17052092,17055173-17055998                       28   6.0  
04_03_0258 - 13573730-13573816,13573881-13574666,13575043-135751...    28   7.9  

>02_01_0385 + 2783387-2783695,2784149-2785082,2785206-2785309,
            2785402-2785486,2785517-2787578,2787732-2787753,
            2788157-2788327,2791473-2791517,2792558-2793874,
            2793962-2794012,2794090-2794188,2794352-2794504,
            2794554-2794571
          Length = 1789

 Score = 31.9 bits (69), Expect = 0.49
 Identities = 15/47 (31%), Positives = 25/47 (53%)
 Frame = +1

Query: 412  KHLPYFPVSLWWLWSKYN*IQPPLQYQRRCSSLHGVHNTLSRSPHAR 552
            K LPY P SL W     N + P   +    S+ + +H ++ R+P++R
Sbjct: 1002 KFLPYPPRSLTWFIENSNHVLPEHGFGNLTSATYPLHLSIERAPNSR 1048


>04_03_0767 +
           19389337-19389381,19390586-19390643,19390720-19390759,
           19390859-19390926,19391007-19391081,19391161-19391216,
           19391317-19391361,19391450-19391701,19391787-19391881,
           19392395-19392485,19392578-19392688,19392788-19392982,
           19393071-19393262
          Length = 440

 Score = 31.5 bits (68), Expect = 0.64
 Identities = 14/25 (56%), Positives = 20/25 (80%)
 Frame = -2

Query: 389 PTKLQLPPREVRRRMKPVPRLYRRL 315
           PT+ QLPP+E  RR+ P+PRL +R+
Sbjct: 200 PTEPQLPPKERERRV-PMPRLRKRI 223


>03_05_0231 - 22170343-22172004,22172225-22172449
          Length = 628

 Score = 31.1 bits (67), Expect = 0.85
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = +3

Query: 222 WKQLPLRFTRRRYPSSNWCPKLSKHKCVMSGETPIQSGDG 341
           W+QL   F + R+     CPKLS  +C   G    +  DG
Sbjct: 585 WRQLRSTFGKLRFVDKRRCPKLSSWRCDAQGIWRREEDDG 624


>07_03_1676 +
           28584269-28584471,28585265-28585755,28587253-28587335,
           28587416-28587530,28587608-28587716,28587925-28587938,
           28588019-28588201,28588301-28588407,28588836-28589078,
           28589184-28589198
          Length = 520

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 24/98 (24%), Positives = 44/98 (44%), Gaps = 5/98 (5%)
 Frame = -3

Query: 637 CGDFMDERYTMQVADCFDVWQNAGANHEREHVDCD*ECCAHREATS---ISFGTAVGAGF 467
           C +  +E + + + + F + Q  G   E + + C  +  AHR A     +    A     
Sbjct: 276 CNEIANE-FEVSLKNHFSIHQTLGRGAEGQVLRCSTQKGAHRSAVKRCDVPRKHADEELR 334

Query: 466 NCTSTIATIAKPESRADVL--LEAFSFALLSCNFLHER 359
           +C + +  I   E + + L  LE F  A+L  N+LH++
Sbjct: 335 SCANVLLMIIWTEKKMETLMKLEFFKEAVLGINYLHQK 372


>07_01_0387 + 2902957-2904705
          Length = 582

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = -2

Query: 392 RPTKLQLPPREVRRRMKPVPRL 327
           RP ++  PP E RRRM P+ RL
Sbjct: 42  RPMRVSAPPVEPRRRMNPLQRL 63


>10_08_0348 + 17051521-17052092,17055173-17055998
          Length = 465

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = -3

Query: 478 GAGFNCTSTIATIAKPESRADV 413
           GAGF C S + T+ KP S A V
Sbjct: 414 GAGFKCNSCVWTVEKPVSDAGV 435


>04_03_0258 -
           13573730-13573816,13573881-13574666,13575043-13575126,
           13575254-13575322,13575324-13576228,13576517-13576784
          Length = 732

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +2

Query: 512 TVCTTLLVAVHMLALMISTCILPNIEAVGNL 604
           T+  + L  + +L LMIS C  P+  A GNL
Sbjct: 19  TIPVSTLKMLELLKLMISACAFPHDTAEGNL 49


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,450,957
Number of Sequences: 37544
Number of extensions: 462593
Number of successful extensions: 1093
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1062
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1093
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1733104716
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)