Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20539
         (684 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_52913| Best HMM Match : No HMM Matches (HMM E-Value=.)              54   1e-07
SB_42304| Best HMM Match : NHL (HMM E-Value=0)                         31   0.87 
SB_29934| Best HMM Match : Vicilin_N (HMM E-Value=1.4)                 29   4.6  

>SB_52913| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 214

 Score = 53.6 bits (123), Expect = 1e-07
 Identities = 25/42 (59%), Positives = 33/42 (78%), Gaps = 2/42 (4%)
 Frame = +2

Query: 509 FTVCTTLLVAVHMLALMISTCILPNIEAVGNLH--SIALVHE 628
           F+V TT+L++VH+ ALMIS CILPNIE+V N H  S  +VH+
Sbjct: 67  FSVMTTILISVHVFALMISVCILPNIESVANTHQSSGLMVHD 108



 Score = 29.9 bits (64), Expect = 2.0
 Identities = 28/113 (24%), Positives = 40/113 (35%), Gaps = 8/113 (7%)
 Frame = +3

Query: 360 LSWRXXXXXXXXXXXXXXXXXXXXGFAMVAMVEVQLNPAPTAVPKEMLVASRCAQHXXXX 539
           LSWR                    GFAM+AMVE+QL      +P  +L+A          
Sbjct: 20  LSWRRLLLTRGKLKASSRTSALMSGFAMIAMVEIQLE---EGIPGGLLIAFSVMTTILIS 76

Query: 540 XXXXXXXLAPAFCQTSKQSATCIV*RSSM--KSPHERLH------WVHRSGLG 674
                  ++       +  A        M   SPHE++H      W+  +GLG
Sbjct: 77  VHVFALMISVCILPNIESVANTHQSSGLMVHDSPHEKMHLYVELAWIFSTGLG 129


>SB_42304| Best HMM Match : NHL (HMM E-Value=0)
          Length = 1279

 Score = 31.1 bits (67), Expect = 0.87
 Identities = 19/56 (33%), Positives = 27/56 (48%)
 Frame = -2

Query: 329  LYRRLTRHNALVLAQFWTPITRRISPPGKTQW*LFPPVLADQTDIPKQVARQSFLL 162
            L R + RH  + L   WTPI +  +PP        PP  A   DI +Q  ++S L+
Sbjct: 964  LIRDIRRHY-MKLTDSWTPIVKPPAPPKPEPTVQTPPQAAQTGDISRQDKKKSGLI 1018


>SB_29934| Best HMM Match : Vicilin_N (HMM E-Value=1.4)
          Length = 290

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 18/48 (37%), Positives = 22/48 (45%)
 Frame = -2

Query: 377 QLPPREVRRRMKPVPRLYRRLTRHNALVLAQFWTPITRRISPPGKTQW 234
           QL     RRR K +  + R+  R N   +A  WTP  RR     KT W
Sbjct: 199 QLSSEVKRRRWKMIGHVLRQ-GRENDCSVALTWTPEGRRKQERPKTTW 245


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,002,193
Number of Sequences: 59808
Number of extensions: 515007
Number of successful extensions: 1101
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1009
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1100
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1769412099
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)