Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20539
         (684 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U22832-1|AAA64507.1|  293|Caenorhabditis elegans Hypothetical pr...    45   6e-05
Z81527-11|CAI91173.1|  390|Caenorhabditis elegans Hypothetical p...    29   4.1  
Z96047-5|CAB09415.1|  379|Caenorhabditis elegans Hypothetical pr...    28   5.4  
U46753-2|AAA85760.1|  894|Caenorhabditis elegans Hypothetical pr...    28   5.4  
Z79597-2|CAB01860.2|  611|Caenorhabditis elegans Hypothetical pr...    27   9.4  
AL132841-7|CAB61033.1|  611|Caenorhabditis elegans Hypothetical ...    27   9.4  

>U22832-1|AAA64507.1|  293|Caenorhabditis elegans Hypothetical
           protein C09F5.2 protein.
          Length = 293

 Score = 44.8 bits (101), Expect = 6e-05
 Identities = 20/28 (71%), Positives = 25/28 (89%)
 Frame = +2

Query: 515 VCTTLLVAVHMLALMISTCILPNIEAVG 598
           V T+LLV+VH+LALM+STCILP +EA G
Sbjct: 153 VVTSLLVSVHLLALMMSTCILPYMEATG 180


>Z81527-11|CAI91173.1|  390|Caenorhabditis elegans Hypothetical
           protein F35E12.9b protein.
          Length = 390

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 12/42 (28%), Positives = 25/42 (59%)
 Frame = -3

Query: 292 LLSFGHQLLEGYRRLVKRSGSCFHQYWLTKPTYLNKLHDNPS 167
           +L++ ++ LE Y++ +K++G  F    +T  +Y     DNP+
Sbjct: 73  MLTYLYKSLEAYKQTIKKTGEYFPLSLVTGISYYTITSDNPN 114


>Z96047-5|CAB09415.1|  379|Caenorhabditis elegans Hypothetical
           protein DY3.6 protein.
          Length = 379

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +2

Query: 476 PHCSTKGDARRFTVCTTLLVAVHMLAL 556
           PHC  K  ++ F  CT++  A H L L
Sbjct: 113 PHCFVKSTSKEFIGCTSMSEAFHRLDL 139


>U46753-2|AAA85760.1|  894|Caenorhabditis elegans Hypothetical
           protein C34F11.5 protein.
          Length = 894

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 15/41 (36%), Positives = 19/41 (46%)
 Frame = +3

Query: 195 YVGLVSQYWWKQLPLRFTRRRYPSSNWCPKLSKHKCVMSGE 317
           Y  ++   W KQ P R TR R        K SKHK   +G+
Sbjct: 596 YSRILMAKWRKQAPTRRTRLRLRRHRLINKKSKHKASRNGK 636


>Z79597-2|CAB01860.2|  611|Caenorhabditis elegans Hypothetical
           protein C33A11.1 protein.
          Length = 611

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 13/39 (33%), Positives = 16/39 (41%)
 Frame = -3

Query: 568 GANHEREHVDCD*ECCAHREATSISFGTAVGAGFNCTST 452
           G +H          C A    T IS  T  G+G+ C ST
Sbjct: 162 GGSHPYHRAQIPYGCAAQTPITDISAYTGYGSGYECGST 200


>AL132841-7|CAB61033.1|  611|Caenorhabditis elegans Hypothetical
           protein C33A11.1 protein.
          Length = 611

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 13/39 (33%), Positives = 16/39 (41%)
 Frame = -3

Query: 568 GANHEREHVDCD*ECCAHREATSISFGTAVGAGFNCTST 452
           G +H          C A    T IS  T  G+G+ C ST
Sbjct: 162 GGSHPYHRAQIPYGCAAQTPITDISAYTGYGSGYECGST 200


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,654,634
Number of Sequences: 27780
Number of extensions: 357085
Number of successful extensions: 750
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 733
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 750
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1560745544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)