Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20539
         (684 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              25   0.67 
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    24   1.6  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    23   2.7  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    23   2.7  
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    22   4.7  
DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    22   4.7  
DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II lar...    21   8.3  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    21   8.3  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 25.0 bits (52), Expect = 0.67
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -2

Query: 668 PTSMYPVESLVWRLHGRAL 612
           P + YP+ES+VW    R L
Sbjct: 513 PVAGYPIESIVWERDTRVL 531


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = -1

Query: 633 ATSWTSAILCKLPTASMFGKMQVLI 559
           A SW + IL  +P  ++FG + V++
Sbjct: 185 ANSWWALILVIVPCLTLFGNVLVIL 209


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +3

Query: 576 CQTSKQSATCIV*RSSMK 629
           CQ+SK S   I+ R+SMK
Sbjct: 623 CQSSKNSENSIMQRASMK 640


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 7/28 (25%), Positives = 17/28 (60%)
 Frame = +1

Query: 514 GVHNTLSRSPHARAHD*HLHFAKHRSSR 597
           G H + ++  H +AH+ H+ + + + S+
Sbjct: 184 GQHQSQAQQQHLQAHEQHMMYQQQQQSQ 211


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 7/20 (35%), Positives = 13/20 (65%)
 Frame = -1

Query: 189 TSCTTILPSEASRSLAGYYI 130
           T+CT I+ + A ++   YY+
Sbjct: 60  TTCTVIIKNPAMQTATNYYL 79


>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -2

Query: 446 HHSETGK*GRCFAGSLQFRPTKL 378
           H+S TGK   CF  SL +   K+
Sbjct: 162 HNSVTGKTTACFEPSLDYCVVKI 184


>DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II large
           subunit protein.
          Length = 296

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 5/13 (38%), Positives = 10/13 (76%)
 Frame = -3

Query: 307 ITHLCLLSFGHQL 269
           + H+C+L  GH++
Sbjct: 113 LLHICMLELGHEV 125


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = +3

Query: 294 HKCVMSGETPIQSG 335
           HKC +  +T IQSG
Sbjct: 176 HKCTVCSKTFIQSG 189


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 203,254
Number of Sequences: 438
Number of extensions: 4789
Number of successful extensions: 12
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20830365
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)