Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20537
         (686 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.07c |set6||histone lysine methyltransferase Set6 |Schizo...    50   4e-07
SPBC31F10.10c |||zf-MYND type zinc finger protein|Schizosaccharo...    36   0.005
SPAC4F10.19c |||zf-HIT protein Hit1 |Schizosaccharomyces pombe|c...    33   0.051
SPBC3E7.10 |fma1||methionine aminopeptidase Fma1 |Schizosaccharo...    28   1.5  
SPBC4F6.12 |||LIM domain|Schizosaccharomyces pombe|chr 2|||Manual      27   1.9  
SPCC622.13c |||conserved eukaryotic protein|Schizosaccharomyces ...    27   2.5  
SPCC1827.01c |||DUF1253 family protein|Schizosaccharomyces pombe...    27   3.4  
SPBC26H8.10 |dis3|rrp44|3'-5' exoribonuclease subunit Dis3 |Schi...    27   3.4  
SPCC613.07 |||zf-HIT|Schizosaccharomyces pombe|chr 3|||Manual          26   4.4  
SPCC31H12.07 |sec231|sec23a, SPCC5E4.01|GTPase activating protei...    26   5.9  
SPAC1399.03 |fur4||uracil permease|Schizosaccharomyces pombe|chr...    26   5.9  
SPBC428.18 |cdt1||replication licensing factor Cdt1|Schizosaccha...    25   7.8  
SPBC19C7.10 |||transcription factor |Schizosaccharomyces pombe|c...    25   7.8  

>SPBP8B7.07c |set6||histone lysine methyltransferase Set6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 483

 Score = 49.6 bits (113), Expect = 4e-07
 Identities = 18/52 (34%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
 Frame = +3

Query: 378 CSSCGEEK-PAKKCSKCKSVQYCDRECQRLHWFVHKKACNRESSARHQLLIP 530
           CS+C EEK   ++C+ CK + YC + CQ+  W  HK  C    +++   ++P
Sbjct: 49  CSTCTEEKVKTQRCAACKIIHYCSKGCQKADWPFHKLECKALQASKQNGILP 100


>SPBC31F10.10c |||zf-MYND type zinc finger
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 574

 Score = 35.9 bits (79), Expect = 0.005
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +3

Query: 411 KCSKCKSVQYCDRECQRLHWFVHKKAC 491
           KC +C+  +YC +ECQ   W  H + C
Sbjct: 497 KCRRCRRTKYCSKECQHQAWPGHSRWC 523


>SPAC4F10.19c |||zf-HIT protein Hit1 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 154

 Score = 32.7 bits (71), Expect = 0.051
 Identities = 15/38 (39%), Positives = 18/38 (47%)
 Frame = +3

Query: 378 CSSCGEEKPAKKCSKCKSVQYCDRECQRLHWFVHKKAC 491
           CS C E +   KC KC S  YC   C    W +H+  C
Sbjct: 4   CSICNESEIKYKCPKC-SFPYCSLPC----WKIHQSQC 36


>SPBC3E7.10 |fma1||methionine aminopeptidase Fma1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 379

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 12/36 (33%), Positives = 17/36 (47%), Gaps = 4/36 (11%)
 Frame = +3

Query: 387 CGEEKPAKKCSKCKS----VQYCDRECQRLHWFVHK 482
           C  E    +C KC +      +C +EC R  W +HK
Sbjct: 15  CNNEADRLQCPKCLNDGVKSYFCGQECFRNSWNIHK 50


>SPBC4F6.12 |||LIM domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 438

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +3

Query: 357 FLDAIPYCSSCGEEKPAKKCSKCK 428
           + D + +C +C + K A KC KC+
Sbjct: 359 YRDDLYWCQTCYDNKYAVKCKKCR 382


>SPCC622.13c |||conserved eukaryotic protein|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1098

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 4/54 (7%)
 Frame = +1

Query: 52   MAFKYHYLSYILREIHNIKDKQKPS----EKEEKKHDVVEIFAKKLLKPGKDGV 201
            M+ KY     ++ E  N   KQ P     E+E +   +++ F+ +LL PGK  V
Sbjct: 979  MSQKYAGDESLVEETWNAFSKQNPDAVYYEREVRGSQMIDTFSTELLIPGKQRV 1032


>SPCC1827.01c |||DUF1253 family protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 652

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 5/48 (10%)
 Frame = +1

Query: 31  GSETNEVMAFKYHYLSYILREIHNIK-----DKQKPSEKEEKKHDVVE 159
           G+  +E+    Y  L Y++ +    K     DK+K S+K +KK+ V+E
Sbjct: 9   GASMDELAGKSYEALLYLMNKNKKRKPEKKDDKEKSSKKVQKKNKVIE 56


>SPBC26H8.10 |dis3|rrp44|3'-5' exoribonuclease subunit Dis3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 970

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = -1

Query: 296 CQGCDHLMECCALPNGN 246
           CQ  D  +  C LPNGN
Sbjct: 512 CQDIDDALHACVLPNGN 528


>SPCC613.07 |||zf-HIT|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 345

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = +3

Query: 378 CSSCGEEKPAKKCSKCKSVQYCDRECQRLH 467
           CS+C +     +C +C S ++C  EC   H
Sbjct: 9   CSTCQKNASKYRCPRCDS-RFCCLECNLEH 37


>SPCC31H12.07 |sec231|sec23a, SPCC5E4.01|GTPase activating protein
           Sec23a|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 759

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = +2

Query: 26  QEAVRQMKSWLSSTIIYHIFYEKYTTSKINRNHQR 130
           Q  + +MKS  SST  Y +  + +TTS   ++ QR
Sbjct: 350 QIGIMEMKSLASSTGGYLVLSDSFTTSIFKQSFQR 384


>SPAC1399.03 |fur4||uracil permease|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 581

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 11/19 (57%), Positives = 15/19 (78%)
 Frame = +1

Query: 121 PSEKEEKKHDVVEIFAKKL 177
           P+EKE +K DV+ I +KKL
Sbjct: 558 PTEKEVEKDDVLSITSKKL 576


>SPBC428.18 |cdt1||replication licensing factor
           Cdt1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 444

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 10/19 (52%), Positives = 16/19 (84%)
 Frame = +2

Query: 518 TVNSKINIDANELSSELQN 574
           +VNSKIN+ +++ SS +QN
Sbjct: 274 SVNSKINLKSHQSSSSVQN 292


>SPBC19C7.10 |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 432

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +1

Query: 112 KQKPSEKEEKKHDVVEIFAKKLLKP 186
           K +PSE+EEK  D+ +   K  +KP
Sbjct: 252 KDQPSEEEEKTSDIQDRKIKTPIKP 276


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,914,736
Number of Sequences: 5004
Number of extensions: 63395
Number of successful extensions: 186
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 186
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)