Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20537
         (686 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_02_0236 + 8135641-8135795,8136167-8136557,8136640-8136931,813...    46   2e-05
03_02_0701 - 10523053-10523220,10523802-10523916,10524102-105241...    44   1e-04
02_03_0361 - 18125504-18126250,18126381-18126543,18126713-18126942     44   2e-04
06_03_0968 - 26402154-26403834,26404322-26404383,26404473-264046...    43   3e-04
03_05_0841 - 28104977-28105142,28105439-28105502,28105586-281056...    41   8e-04
04_03_0710 - 18916593-18917372,18917467-18917629,18917715-18917959     39   0.003
01_05_0451 - 22361617-22361811,22362728-22362842,22363443-223635...    38   0.006
07_03_0378 + 17446311-17446514,17446814-17446927,17447124-174472...    38   0.007
08_02_1014 - 23586552-23587224,23587402-23587463,23587735-235879...    38   0.010
01_06_1840 - 40250285-40251022,40251121-40251283,40251523-40251731     35   0.070
03_05_1146 - 30735010-30735216,30735336-30735650,30740169-307401...    31   0.86 
12_02_0034 - 12539201-12540439                                         31   1.1  
04_03_0941 - 20950190-20951088,20952436-20952478,20952580-209526...    29   2.6  
11_01_0449 - 3473662-3475049,3476026-3476128,3476215-3476439,347...    29   3.5  
05_04_0422 + 21122099-21122194,21122353-21122510,21122651-211228...    29   3.5  
05_05_0240 + 23548408-23549408,23549882-23549980,23550282-235503...    29   4.6  

>02_02_0236 +
           8135641-8135795,8136167-8136557,8136640-8136931,
           8137117-8137271,8137363-8137451,8137623-8137967,
           8139046-8139169,8139424-8139581,8139673-8139757,
           8140094-8140306,8141314-8141375,8141466-8141951,
           8142472-8142568
          Length = 883

 Score = 46.4 bits (105), Expect = 2e-05
 Identities = 20/42 (47%), Positives = 29/42 (69%), Gaps = 2/42 (4%)
 Frame = +3

Query: 378 CSSCGEEKPAK-KCSKCKSVQYCDRECQRLHWFV-HKKACNR 497
           C++C    PAK +CS+CKSV+YC  +CQ +HW   HK+ C +
Sbjct: 32  CATC--HGPAKTRCSRCKSVRYCSGKCQIIHWRQGHKQTCQQ 71


>03_02_0701 -
           10523053-10523220,10523802-10523916,10524102-10524172,
           10524263-10524420,10524497-10524590,10524678-10524766,
           10525322-10525419,10525492-10525625,10525714-10525797,
           10525903-10526151
          Length = 419

 Score = 44.0 bits (99), Expect = 1e-04
 Identities = 19/41 (46%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = +3

Query: 372 PYCSSCGEEKPAKKCSKCKSVQYCDRECQRLHW-FVHKKAC 491
           P C  CG  K  K CS CK  +YC  + Q LHW   HK  C
Sbjct: 190 PVCHWCGTWKGDKLCSSCKKARYCSEKHQTLHWRSGHKSDC 230


>02_03_0361 - 18125504-18126250,18126381-18126543,18126713-18126942
          Length = 379

 Score = 43.6 bits (98), Expect = 2e-04
 Identities = 22/49 (44%), Positives = 27/49 (55%), Gaps = 7/49 (14%)
 Frame = +3

Query: 366 AIPYCS--SCGEEKPAK----KCSKCKSVQYCDRECQRLHWFV-HKKAC 491
           A+  CS  +CG  +  K    +CS C  V YC R CQ +HW V HK AC
Sbjct: 300 ALRMCSQPTCGRPETRKHEFRRCSVCSGVIYCSRACQAMHWKVAHKSAC 348


>06_03_0968 -
           26402154-26403834,26404322-26404383,26404473-26404682,
           26404776-26404860,26405461-26405618,26405745-26405868,
           26405955-26406123,26406202-26406287,26406379-26406467,
           26406564-26406735,26407820-26408193
          Length = 1069

 Score = 42.7 bits (96), Expect = 3e-04
 Identities = 19/41 (46%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = +3

Query: 378 CSSCGEEKPAKKCSKCKSVQYCDRECQRLHW-FVHKKACNR 497
           C++CG     KKCS CK V+YC + CQ  HW   HK  C +
Sbjct: 105 CAACGYIA-TKKCSGCKRVRYCSQGCQSKHWQSGHKFKCKQ 144


>03_05_0841 -
           28104977-28105142,28105439-28105502,28105586-28105655,
           28105743-28105852,28106217-28106295,28106610-28106691,
           28106791-28106879,28107351-28107425,28107728-28107862,
           28108018-28108163,28108380-28108491
          Length = 375

 Score = 41.1 bits (92), Expect = 8e-04
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +3

Query: 378 CSSCGEEKPAKKCSKCKSVQYCDRECQRLHWFVHKKAC 491
           C +C   +  +KCS C+   YC   CQR  W +H+  C
Sbjct: 60  CDNCFASRNLRKCSVCRVAWYCGSACQREEWKLHQLEC 97


>04_03_0710 - 18916593-18917372,18917467-18917629,18917715-18917959
          Length = 395

 Score = 39.1 bits (87), Expect = 0.003
 Identities = 15/29 (51%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = +3

Query: 408 KKCSKCKSVQYCDRECQRLHW-FVHKKAC 491
           ++CS C  V YC R CQ LHW   HK  C
Sbjct: 340 RRCSVCGVVNYCSRACQALHWKTAHKAEC 368


>01_05_0451 -
           22361617-22361811,22362728-22362842,22363443-22363513,
           22363600-22363754,22363843-22363933,22364049-22364104,
           22364910-22365027,22365087-22365200,22365289-22365504
          Length = 376

 Score = 38.3 bits (85), Expect = 0.006
 Identities = 15/44 (34%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
 Frame = +3

Query: 390 GEEKPAKK-CSKCKSVQYCDRECQRLHWFV-HKKACNRESSARH 515
           G+++  +K CS+C+   YC ++ Q LHW   HK  C++ S + +
Sbjct: 145 GKDRAGEKVCSRCRKSSYCSKKHQELHWRAKHKNECHQISGSHN 188


>07_03_0378 +
           17446311-17446514,17446814-17446927,17447124-17447242,
           17447595-17447641,17447720-17447820,17450769-17450840,
           17451290-17451403,17451495-17451500,17451501-17451611
          Length = 295

 Score = 37.9 bits (84), Expect = 0.007
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +3

Query: 408 KKCSKCKSVQYCDRECQRLHWFVHKKACNR 497
           ++C  C +V YC R  Q +HW  HK+ C R
Sbjct: 52  RRCGGCGAVAYCSRAHQTVHWGFHKEECAR 81


>08_02_1014 -
           23586552-23587224,23587402-23587463,23587735-23587950,
           23588125-23588209,23589232-23589389,23589505-23589625,
           23590081-23590243,23590330-23590415,23590660-23590742,
           23590816-23591677,23593266-23593693
          Length = 978

 Score = 37.5 bits (83), Expect = 0.010
 Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
 Frame = +3

Query: 411 KCSKCKSVQYCDRECQRLHWFV-HKKACNRESS-ARH 515
           +C +CK+V+YC  +CQ  HW   HK  C   S+ A H
Sbjct: 133 RCKQCKAVKYCSFKCQIAHWRQGHKNECRPPSTDANH 169


>01_06_1840 - 40250285-40251022,40251121-40251283,40251523-40251731
          Length = 369

 Score = 34.7 bits (76), Expect = 0.070
 Identities = 13/29 (44%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
 Frame = +3

Query: 408 KKCSKCKSVQYCDRECQRLHW-FVHKKAC 491
           ++CS C +  YC R CQ L W   HK  C
Sbjct: 327 RRCSVCGAANYCSRACQALDWKRAHKAQC 355


>03_05_1146 -
           30735010-30735216,30735336-30735650,30740169-30740191,
           30740591-30740666,30740764-30740889,30740968-30741033,
           30741296-30741539,30741639-30741691
          Length = 369

 Score = 31.1 bits (67), Expect = 0.86
 Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
 Frame = +3

Query: 294 TSKDPPTALSVINCTINGQRGFLDAIPYCSSCGEEKPAK---KCSKCKSVQYC 443
           +S D P +LS   C   G+ G   A+ +C+ C ++   K   KCSKC     C
Sbjct: 26  SSGDAPDSLSAA-CGGAGEGGGKKALYHCNYCNKDISGKIRIKCSKCPDFDLC 77


>12_02_0034 - 12539201-12540439
          Length = 412

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 19/72 (26%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
 Frame = +3

Query: 297 SKDPPTALSVINCTINGQRG-FLDAIPYCSSCGEEKPAKKCSKCKSVQYCDRECQRLHWF 473
           ++ P   LS + C   G++G F    P     G++   KK    K ++   +E +++  F
Sbjct: 266 NRRPNKTLSNLRCFECGEKGHFASKCPSKDVDGDKSSKKKSGGYKLMKKLKKERKKIEAF 325

Query: 474 VHKKACNRESSA 509
           + +   N+ESSA
Sbjct: 326 IREWDSNKESSA 337


>04_03_0941 -
           20950190-20951088,20952436-20952478,20952580-20952606,
           20953189-20953301,20953872-20954715,20955740-20955790,
           20956026-20956126,20956205-20956244,20956360-20957124
          Length = 960

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 5/32 (15%)
 Frame = +3

Query: 375 YCSSCGEEKPAKK-----CSKCKSVQYCDREC 455
           +CSSC    PA+      C+ C SV+YC  +C
Sbjct: 36  HCSSCFHRIPAQSPHDMSCTMCGSVRYCCSDC 67


>11_01_0449 -
           3473662-3475049,3476026-3476128,3476215-3476439,
           3476689-3476856,3477414-3477529,3477640-3477792,
           3477879-3478022,3478980-3479583
          Length = 966

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 6/64 (9%)
 Frame = +3

Query: 270 FHQMVTALTSKDPPTALSVINCTING-QRGFLDAIPYC---SSCGEEKPAKKCSKCKS-- 431
           FH+  + L  ++P    S +   +    +  LD  P C   S CGE K AK  + C+   
Sbjct: 623 FHEHASFLADEEPQLLASAVFAFLRLLAKNRLDPAPQCLECSDCGECKNAKNLAGCRENL 682

Query: 432 VQYC 443
           V +C
Sbjct: 683 VSFC 686


>05_04_0422 +
           21122099-21122194,21122353-21122510,21122651-21122866,
           21122965-21123379
          Length = 294

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 17/68 (25%), Positives = 33/68 (48%), Gaps = 2/68 (2%)
 Frame = -3

Query: 567 SSELNSLASIFILELTVGAGHWTLCCRLFC--AQTSAISDTPYHNIVLIYTWNISLRASL 394
           ++EL   A+IF++   V       CCR FC  ++T+ +       IV +  + + L A++
Sbjct: 113 AAELGICAAIFLMITHVAMAAAGCCCRSFCIPSETARVVCAITSWIVPVIVFVLLLHAAV 172

Query: 393 HHKNCSMV 370
              +C  +
Sbjct: 173 EESDCDKI 180


>05_05_0240 +
           23548408-23549408,23549882-23549980,23550282-23550354,
           23550416-23550478
          Length = 411

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = -3

Query: 507 HWTLCCRLFCAQTSAISDTPYHNIVLIYTWNISLR 403
           HW   C LFC  TS+IS  P+    +  +W++  R
Sbjct: 336 HWFNFC-LFCTSTSSISALPFMFSAVKNSWSLEWR 369


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,182,282
Number of Sequences: 37544
Number of extensions: 388190
Number of successful extensions: 1026
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1004
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1026
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1744894544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)