Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20537
(686 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_8926| Best HMM Match : adh_short (HMM E-Value=1.5e-15) 49 4e-06
SB_8638| Best HMM Match : PP2C (HMM E-Value=6.5e-32) 47 2e-05
SB_4587| Best HMM Match : No HMM Matches (HMM E-Value=.) 47 2e-05
SB_3815| Best HMM Match : zf-MYND (HMM E-Value=1.3e-11) 46 4e-05
SB_7007| Best HMM Match : No HMM Matches (HMM E-Value=.) 46 4e-05
SB_17099| Best HMM Match : zf-MYND (HMM E-Value=2.4e-11) 45 7e-05
SB_4485| Best HMM Match : No HMM Matches (HMM E-Value=.) 43 3e-04
SB_12442| Best HMM Match : zf-MYND (HMM E-Value=0.0028) 39 0.003
SB_54602| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.006
SB_10657| Best HMM Match : zf-MYND (HMM E-Value=2.6e-06) 38 0.006
SB_50662| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.006
SB_56686| Best HMM Match : Cadherin (HMM E-Value=0) 36 0.023
SB_15096| Best HMM Match : zf-MYND (HMM E-Value=4e-07) 36 0.031
SB_33005| Best HMM Match : zf-MYND (HMM E-Value=2.5e-07) 36 0.031
SB_30181| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.031
SB_11312| Best HMM Match : Ank (HMM E-Value=2.1e-18) 35 0.054
SB_25189| Best HMM Match : Drf_FH1 (HMM E-Value=4.1) 33 0.29
SB_22258| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.38
SB_40973| Best HMM Match : zf-MYND (HMM E-Value=0.061) 31 0.66
SB_37928| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.87
SB_28550| Best HMM Match : Fer2_2 (HMM E-Value=2.49992e-42) 31 1.2
SB_46068| Best HMM Match : zf-CCHC (HMM E-Value=0.0034) 30 1.5
SB_27679| Best HMM Match : zf-MYND (HMM E-Value=0.00039) 30 1.5
SB_31640| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.0
SB_26918| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.7
SB_52258| Best HMM Match : PAN (HMM E-Value=4.5e-09) 29 2.7
SB_35470| Best HMM Match : PAN (HMM E-Value=2.9e-08) 29 2.7
SB_28606| Best HMM Match : PAN (HMM E-Value=4.6e-10) 29 2.7
SB_9820| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.7
SB_552| Best HMM Match : Laminin_EGF (HMM E-Value=1.3e-23) 29 2.7
SB_49663| Best HMM Match : TolA (HMM E-Value=0.059) 29 3.5
SB_50655| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.7
SB_7365| Best HMM Match : ABC_membrane (HMM E-Value=0) 29 4.7
SB_40833| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.2
SB_7044| Best HMM Match : PAN (HMM E-Value=1.3e-07) 28 6.2
SB_55606| Best HMM Match : TPR_2 (HMM E-Value=8.3e-08) 28 6.2
SB_35167| Best HMM Match : zf-HIT (HMM E-Value=0.046) 28 6.2
SB_20525| Best HMM Match : E1-E2_ATPase (HMM E-Value=0) 28 8.1
SB_19193| Best HMM Match : zf-MYND (HMM E-Value=0.00017) 28 8.1
SB_11364| Best HMM Match : TPR_2 (HMM E-Value=3e-06) 28 8.1
SB_59417| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.1
>SB_8926| Best HMM Match : adh_short (HMM E-Value=1.5e-15)
Length = 537
Score = 48.8 bits (111), Expect = 4e-06
Identities = 17/48 (35%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Frame = +3
Query: 375 YCSSCGEEKPAKK-CSKCKSVQYCDRECQRLHWFVHKKACNRESSARH 515
YC+ C +++ K C++C+ V YC R CQ +HW HK C ++ ++
Sbjct: 13 YCAVCRQKQNHMKICTRCRGVLYCSRSCQSIHWPKHKVTCKPTATCKN 60
>SB_8638| Best HMM Match : PP2C (HMM E-Value=6.5e-32)
Length = 905
Score = 46.8 bits (106), Expect = 2e-05
Identities = 16/39 (41%), Positives = 23/39 (58%)
Frame = +3
Query: 408 KKCSKCKSVQYCDRECQRLHWFVHKKACNRESSARHQLL 524
+KCS+CKS YC ++C R HW HK C + ++ L
Sbjct: 19 QKCSRCKSTMYCSKDCPRSHWKHHKAICKAKKHSKDSKL 57
>SB_4587| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2656
Score = 46.8 bits (106), Expect = 2e-05
Identities = 19/46 (41%), Positives = 28/46 (60%)
Frame = +3
Query: 378 CSSCGEEKPAKKCSKCKSVQYCDRECQRLHWFVHKKACNRESSARH 515
C++CG+ KKC+ CK + YC R+CQ+ HW HK C + S +
Sbjct: 141 CTNCGK-LGGKKCTACK-IPYCSRKCQQQHWPQHKTTCTWKISTTY 184
>SB_3815| Best HMM Match : zf-MYND (HMM E-Value=1.3e-11)
Length = 281
Score = 45.6 bits (103), Expect = 4e-05
Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Frame = +3
Query: 378 CSSCGEE-KPAKKCSKCKSVQYCDRECQRLHWFVHKKACNR 497
C C E+ ++CS+CK +YC CQR W +HK C R
Sbjct: 51 CDFCLEKLSDLQRCSRCKFARYCGASCQRAAWRIHKSECER 91
>SB_7007| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 608
Score = 45.6 bits (103), Expect = 4e-05
Identities = 18/42 (42%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = +3
Query: 375 YCSSCGEEKP-AKKCSKCKSVQYCDRECQRLHWFVHKKACNR 497
YC C ++ K+CS C S YC +ECQ W HKK C +
Sbjct: 54 YCHKCSQKGGNMKQCSNCLSAWYCSKECQGEAWGSHKKRCTK 95
Score = 29.1 bits (62), Expect = 3.5
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = +3
Query: 411 KCSKCKSVQYCDRECQRLHWFVHKKACNRES 503
KC +C +YC +C+ + + HK C+ S
Sbjct: 20 KCLRCNIAEYCSAQCRDDNQWRHKVDCDNVS 50
>SB_17099| Best HMM Match : zf-MYND (HMM E-Value=2.4e-11)
Length = 200
Score = 44.8 bits (101), Expect = 7e-05
Identities = 22/41 (53%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Frame = +3
Query: 378 CSSCGEEKPAKKCSKCKSVQYCDRECQRLHWFV-HKKACNR 497
C CG KKCSKCKSV YC R+ Q W HK ACN+
Sbjct: 150 CDVCGCSG-TKKCSKCKSVFYCSRDHQVFGWKTGHKTACNQ 189
>SB_4485| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1769
Score = 42.7 bits (96), Expect = 3e-04
Identities = 15/39 (38%), Positives = 20/39 (51%)
Frame = +3
Query: 375 YCSSCGEEKPAKKCSKCKSVQYCDRECQRLHWFVHKKAC 491
+C C K CS C+ YCD+ CQ++H HK C
Sbjct: 1383 HCVFCHRTGKLKTCSNCRVASYCDQTCQKMHLAKHKLLC 1421
>SB_12442| Best HMM Match : zf-MYND (HMM E-Value=0.0028)
Length = 3809
Score = 39.1 bits (87), Expect = 0.003
Identities = 19/46 (41%), Positives = 24/46 (52%), Gaps = 5/46 (10%)
Frame = +3
Query: 372 PYCSS----CGEEKPA-KKCSKCKSVQYCDRECQRLHWFVHKKACN 494
PYC G +K + C C + YC REC+R HW HKK C+
Sbjct: 3521 PYCRREDVLYGNQKSSFTSCPACYTY-YCTRECRRAHWREHKKVCH 3565
>SB_54602| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 450
Score = 38.3 bits (85), Expect = 0.006
Identities = 15/32 (46%), Positives = 18/32 (56%)
Frame = +3
Query: 432 VQYCDRECQRLHWFVHKKACNRESSARHQLLI 527
V YC CQ+LHW HKK C R + Q L+
Sbjct: 353 VGYCSVSCQKLHWSTHKKHCQRLAKEYEQELL 384
>SB_10657| Best HMM Match : zf-MYND (HMM E-Value=2.6e-06)
Length = 167
Score = 38.3 bits (85), Expect = 0.006
Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = +3
Query: 378 CSSCGEEK-PAKKCSKCKSVQYCDRECQRLHWFVHKKAC 491
C++CG K KC KC V YC R CQ+ H++ C
Sbjct: 128 CANCGLAKIRLSKCGKCLKVYYCSRNCQKEDRKWHRQEC 166
>SB_50662| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 161
Score = 38.3 bits (85), Expect = 0.006
Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 5/48 (10%)
Frame = +3
Query: 378 CSSCGEEKPAKK----CSKCKSVQYCDRECQRLHW-FVHKKACNRESS 506
C CG E+ + C C V+YC CQR HW H++ C E S
Sbjct: 104 CGGCGWEENGPERLYLCGGCLGVRYCSSLCQRRHWEEEHRRVCTGEYS 151
>SB_56686| Best HMM Match : Cadherin (HMM E-Value=0)
Length = 1888
Score = 36.3 bits (80), Expect = 0.023
Identities = 17/47 (36%), Positives = 22/47 (46%)
Frame = +3
Query: 363 DAIPYCSSCGEEKPAKKCSKCKSVQYCDRECQRLHWFVHKKACNRES 503
DA CG+ CS C S YC ++CQ W HK C+ +S
Sbjct: 1838 DATRLFCPCGQTAQFT-CSACNSRGYCGQKCQLKDWGKHKTDCHNQS 1883
>SB_15096| Best HMM Match : zf-MYND (HMM E-Value=4e-07)
Length = 84
Score = 35.9 bits (79), Expect = 0.031
Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Frame = +3
Query: 375 YCSSCGEEKPAK--KCSKCKSVQYCDRECQRLHWFVHKKACN 494
+CS +E AK +C +C YC R CQ W HK+ CN
Sbjct: 30 FCSIDEDELGAKMKRCVRCGET-YCSRGCQTKDWKEHKRICN 70
>SB_33005| Best HMM Match : zf-MYND (HMM E-Value=2.5e-07)
Length = 145
Score = 35.9 bits (79), Expect = 0.031
Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Frame = +3
Query: 375 YCSSCGEEKPAK--KCSKCKSVQYCDRECQRLHWFVHKKACN 494
+CS +E AK +C +C YC R CQ W HK+ CN
Sbjct: 91 FCSINEDELGAKMKRCVRCGET-YCSRGCQTKDWKEHKRICN 131
>SB_30181| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 150
Score = 35.9 bits (79), Expect = 0.031
Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Frame = +3
Query: 375 YCSSCGEEKPAK--KCSKCKSVQYCDRECQRLHWFVHKKACN 494
+CS +E AK +C +C YC R CQ W HK+ CN
Sbjct: 96 FCSIDEDELGAKMKRCVRCGET-YCSRGCQTKDWKEHKRICN 136
>SB_11312| Best HMM Match : Ank (HMM E-Value=2.1e-18)
Length = 516
Score = 35.1 bits (77), Expect = 0.054
Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 3/44 (6%)
Frame = +3
Query: 375 YCSSCGEEKPAK--KCSKCKSVQYCDRECQRLHW-FVHKKACNR 497
YC CG + C++CK V YC + C+ W H++ C R
Sbjct: 391 YCYECGRSIGVRLSACTRCKEVFYCSKSCKLKAWNSRHREECVR 434
>SB_25189| Best HMM Match : Drf_FH1 (HMM E-Value=4.1)
Length = 570
Score = 32.7 bits (71), Expect = 0.29
Identities = 14/65 (21%), Positives = 32/65 (49%)
Frame = -3
Query: 558 LNSLASIFILELTVGAGHWTLCCRLFCAQTSAISDTPYHNIVLIYTWNISLRASLHHKNC 379
L+ L L+ ++T C ++ +A + Y + ++ +NI+ A +++ +C
Sbjct: 457 LHKLCYCVALQYRSHCHYYTSCATMWHYNIAAFAIIYYTSCATVWHYNIAATAIIYYTSC 516
Query: 378 SMVWH 364
+ VWH
Sbjct: 517 ATVWH 521
Score = 31.1 bits (67), Expect = 0.87
Identities = 11/48 (22%), Positives = 27/48 (56%)
Frame = -3
Query: 507 HWTLCCRLFCAQTSAISDTPYHNIVLIYTWNISLRASLHHKNCSMVWH 364
++T C ++ +A + Y + ++ +NI+ A +++ +C+ VWH
Sbjct: 493 YYTSCATVWHYNIAATAIIYYTSCATVWHYNIAATAIIYYTSCATVWH 540
Score = 28.3 bits (60), Expect = 6.2
Identities = 12/49 (24%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Frame = -3
Query: 507 HWTLCCRLFCAQTSAISDTPYH-NIVLIYTWNISLRASLHHKNCSMVWH 364
H+ L +C S Y+ + ++ +NI+ A +++ +C+ VWH
Sbjct: 253 HYLLHKLCYCVALQYRSHCHYYTSCATVWHYNIATTAIIYYTSCATVWH 301
>SB_22258| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 549
Score = 32.3 bits (70), Expect = 0.38
Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 5/56 (8%)
Frame = +3
Query: 357 FLDAIPYCSSCG---EEKPAKKCSKC--KSVQYCDRECQRLHWFVHKKACNRESSA 509
+L+ I C+SC E+K A + SKC K V CD +C V C RE+ +
Sbjct: 194 YLECIQMCTSCDFRVEKKLAVRSSKCNCKFVWCCDIKCSECKKLVAVANCYREADS 249
>SB_40973| Best HMM Match : zf-MYND (HMM E-Value=0.061)
Length = 125
Score = 31.5 bits (68), Expect = 0.66
Identities = 13/25 (52%), Positives = 19/25 (76%), Gaps = 1/25 (4%)
Frame = +3
Query: 372 PYCSSCGEEKPA-KKCSKCKSVQYC 443
P C++CG KPA K+CS+C++ YC
Sbjct: 101 PKCANCG--KPATKRCSRCQNEWYC 123
>SB_37928| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 339
Score = 31.1 bits (67), Expect = 0.87
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = +3
Query: 408 KKCSKCKSVQYCDRECQRLHWFVHKKAC 491
K C C + YC EC+ LHW H+ C
Sbjct: 135 KSCKACFT-HYCSPECRILHWPEHRLDC 161
>SB_28550| Best HMM Match : Fer2_2 (HMM E-Value=2.49992e-42)
Length = 1644
Score = 30.7 bits (66), Expect = 1.2
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = +1
Query: 439 IVIGSVRDCTGLCTKKPATESPVP 510
I I + CTG C+ P TESPVP
Sbjct: 324 IDIEELNKCTGNCSNCPCTESPVP 347
>SB_46068| Best HMM Match : zf-CCHC (HMM E-Value=0.0034)
Length = 193
Score = 30.3 bits (65), Expect = 1.5
Identities = 14/42 (33%), Positives = 20/42 (47%)
Frame = +3
Query: 342 NGQRGFLDAIPYCSSCGEEKPAKKCSKCKSVQYCDRECQRLH 467
N ++ + A YC +CG EKP S C + C + C H
Sbjct: 89 NVRKQYAIAYGYCFNCGLEKPGHGSSSCPDLPACTK-CPGRH 129
>SB_27679| Best HMM Match : zf-MYND (HMM E-Value=0.00039)
Length = 167
Score = 30.3 bits (65), Expect = 1.5
Identities = 11/29 (37%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Frame = +3
Query: 414 CSKCKSVQYCDRECQRLHW-FVHKKACNR 497
C++CK V YC + C+ W H++ C R
Sbjct: 32 CTRCKEVFYCSKSCKLKAWNSRHREECVR 60
>SB_31640| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3003
Score = 29.9 bits (64), Expect = 2.0
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +3
Query: 378 CSSCGEEKPAKKCSKCKSVQYCDRE 452
CS+CGE +C KC+S+ Y +R+
Sbjct: 1873 CSNCGEN--VYQCHKCRSINYDERD 1895
>SB_26918| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 174
Score = 29.5 bits (63), Expect = 2.7
Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
Frame = +3
Query: 432 VQYC--DRECQRLHWFVHKKACNRESSARHQ 518
V +C DR CQ L++ K C +S RH+
Sbjct: 120 VMFCMLDRRCQSLNYVTSSKTCEINNSTRHE 150
>SB_52258| Best HMM Match : PAN (HMM E-Value=4.5e-09)
Length = 97
Score = 29.5 bits (63), Expect = 2.7
Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
Frame = +3
Query: 432 VQYC--DRECQRLHWFVHKKACNRESSARHQ 518
V +C DR CQ L++ K C +S RH+
Sbjct: 43 VMFCMLDRRCQSLNYVTSSKTCEINNSTRHE 73
>SB_35470| Best HMM Match : PAN (HMM E-Value=2.9e-08)
Length = 614
Score = 29.5 bits (63), Expect = 2.7
Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
Frame = +3
Query: 432 VQYC--DRECQRLHWFVHKKACNRESSARHQ 518
V +C DR CQ L++ K C +S RH+
Sbjct: 560 VMFCMLDRRCQSLNYVTSSKTCEINNSTRHE 590
>SB_28606| Best HMM Match : PAN (HMM E-Value=4.6e-10)
Length = 463
Score = 29.5 bits (63), Expect = 2.7
Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
Frame = +3
Query: 432 VQYC--DRECQRLHWFVHKKACNRESSARHQ 518
V +C DR CQ L++ K C +S RH+
Sbjct: 409 VMFCMLDRRCQSLNYVTSSKTCEINNSTRHE 439
>SB_9820| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1060
Score = 29.5 bits (63), Expect = 2.7
Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
Frame = +3
Query: 432 VQYC--DRECQRLHWFVHKKACNRESSARHQ 518
V +C DR CQ L++ K C +S RH+
Sbjct: 1006 VMFCMLDRRCQSLNYVTSSKTCEINNSTRHE 1036
>SB_552| Best HMM Match : Laminin_EGF (HMM E-Value=1.3e-23)
Length = 198
Score = 29.5 bits (63), Expect = 2.7
Identities = 8/26 (30%), Positives = 15/26 (57%)
Frame = +3
Query: 363 DAIPYCSSCGEEKPAKKCSKCKSVQY 440
D +P C++C E ++C +C+ Y
Sbjct: 39 DGLPTCTNCSESHAGRQCERCQDGYY 64
>SB_49663| Best HMM Match : TolA (HMM E-Value=0.059)
Length = 591
Score = 29.1 bits (62), Expect = 3.5
Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Frame = +2
Query: 26 QEAVRQMKSW-LSSTIIYHIFYEKYTTSKINRNHQRRKKR 142
Q A+ +MKS+ + S I++ Y KY RN QR+++R
Sbjct: 256 QTALEEMKSFTVKSIILFSRVYSKYKDILEARNRQRKRER 295
>SB_50655| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2033
Score = 28.7 bits (61), Expect = 4.7
Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
Frame = +3
Query: 243 GIPIRECTTFHQMVTA--LTSKDPPTALSVINCTINGQRGFLDAIPYCSSCGEEKPAKKC 416
GIP R+ TT + L KD T L I T+NG +D + +CG +K + +
Sbjct: 1347 GIPARKSTTDSPDNASPNLPPKDNITPLGNIIMTVNGAIKLIDKLKPNKACGPDKVSARI 1406
Query: 417 SK 422
K
Sbjct: 1407 LK 1408
>SB_7365| Best HMM Match : ABC_membrane (HMM E-Value=0)
Length = 1301
Score = 28.7 bits (61), Expect = 4.7
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = +1
Query: 106 KDKQKPSEKEEKKHDVVEIFAKKLLK 183
KDK+K S KEEKK +V++ +L +
Sbjct: 257 KDKKKESAKEEKKEKIVQVPLTQLFR 282
>SB_40833| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1300
Score = 28.3 bits (60), Expect = 6.2
Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 5/42 (11%)
Frame = +3
Query: 375 YCSSCGEEKPAKKCSKCKSV-----QYCDRECQRLHWFVHKK 485
YCS+C + CS C + YC REC + F++ K
Sbjct: 821 YCSTCEGGNGLRNCSACVAPFILLDSYCVRECPQKGHFLNAK 862
>SB_7044| Best HMM Match : PAN (HMM E-Value=1.3e-07)
Length = 564
Score = 28.3 bits (60), Expect = 6.2
Identities = 11/31 (35%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
Frame = +3
Query: 432 VQYC--DRECQRLHWFVHKKACNRESSARHQ 518
V +C DR CQ L++ K C ++ RH+
Sbjct: 510 VTFCMLDRRCQSLNYITSSKTCEINNATRHE 540
>SB_55606| Best HMM Match : TPR_2 (HMM E-Value=8.3e-08)
Length = 771
Score = 28.3 bits (60), Expect = 6.2
Identities = 12/37 (32%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Frame = +3
Query: 363 DAIPYCSSCGEEKPAK-KCSKCKSVQYCDRECQRLHW 470
+A +C C + A C+ C SV YC C+ W
Sbjct: 326 NAKTHCECCYKSLVAPVPCNHCSSVLYCSAACRNKAW 362
>SB_35167| Best HMM Match : zf-HIT (HMM E-Value=0.046)
Length = 632
Score = 28.3 bits (60), Expect = 6.2
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +3
Query: 414 CSKCKSVQYCDRECQRLHWFVHKKACNRE 500
CS C + QYC +E +R H+ CN++
Sbjct: 32 CSHCHA-QYCSKEHKRADQRYHRHRCNKQ 59
>SB_20525| Best HMM Match : E1-E2_ATPase (HMM E-Value=0)
Length = 1145
Score = 27.9 bits (59), Expect = 8.1
Identities = 20/68 (29%), Positives = 28/68 (41%), Gaps = 2/68 (2%)
Frame = +3
Query: 294 TSKDPPTALSVINCTINGQ-RGFLDAIPYCSSCGEEKPAKKCSKCKS-VQYCDRECQRLH 467
T + TA V +C N + L C G+ P+K CS K V+ C E + L
Sbjct: 214 TDQVTTTAKDVSDCCSNKTLKSVLAEGKSCEEGGDRDPSKSCSSSKKRVKACCSEKENLE 273
Query: 468 WFVHKKAC 491
+AC
Sbjct: 274 VSAGNEAC 281
>SB_19193| Best HMM Match : zf-MYND (HMM E-Value=0.00017)
Length = 294
Score = 27.9 bits (59), Expect = 8.1
Identities = 8/19 (42%), Positives = 12/19 (63%)
Frame = +3
Query: 414 CSKCKSVQYCDRECQRLHW 470
CS C +V+YC +C + W
Sbjct: 90 CSYCTTVRYCSEKCAKESW 108
>SB_11364| Best HMM Match : TPR_2 (HMM E-Value=3e-06)
Length = 357
Score = 27.9 bits (59), Expect = 8.1
Identities = 8/19 (42%), Positives = 12/19 (63%)
Frame = +3
Query: 414 CSKCKSVQYCDRECQRLHW 470
CS C +V+YC +C + W
Sbjct: 294 CSYCTTVRYCSEKCAKESW 312
>SB_59417| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1822
Score = 27.9 bits (59), Expect = 8.1
Identities = 13/54 (24%), Positives = 24/54 (44%)
Frame = +3
Query: 291 LTSKDPPTALSVINCTINGQRGFLDAIPYCSSCGEEKPAKKCSKCKSVQYCDRE 452
LT P S + ++ +G PY +C +E P + +K +S+ C +
Sbjct: 161 LTLPSPRAHQSRYSTVVHVTKGSTITAPYRGACDKENPKRTIAKDQSISRCTNQ 214
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,525,876
Number of Sequences: 59808
Number of extensions: 474141
Number of successful extensions: 3548
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 3454
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3544
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1781448916
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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