Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20537
         (686 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     23   2.1  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    23   2.1  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    23   2.7  
DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    22   6.3  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   6.3  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   6.3  

>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +3

Query: 267 TFHQMVTALTSKDPP 311
           T+HQ  T + S DPP
Sbjct: 167 TYHQFQTVVASMDPP 181


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 13/67 (19%), Positives = 28/67 (41%), Gaps = 1/67 (1%)
 Frame = -3

Query: 567 SSELNSLASIFILELTVGAGHWTLCCRLFCAQTSAISDTPYHNIVLIYTWNISLRASLHH 388
           +S L+++ S+ ++ + +  G W L        +S  S  P   +     W + +  S   
Sbjct: 55  ASGLSAMLSLVVVTVAISTGEWLLTEEKLPKTSSNASVEPDSKVTYSGLWRVCVAISSRM 114

Query: 387 K-NCSMV 370
           +  CS +
Sbjct: 115 EYECSRI 121


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +1

Query: 352 EGFWMPYHTAVLVVKRSP 405
           EGF +P H  VL ++  P
Sbjct: 406 EGFMIPTHLKVLTIEEKP 423


>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = -1

Query: 317 GCRWIFTCQG 288
           G RWIF+C G
Sbjct: 63  GTRWIFSCIG 72


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -1

Query: 518  LVPGTGLSVAGFFVHKPVQSLTLPI 444
            LVPG+  +VAG F  +P  +  L I
Sbjct: 928  LVPGSQQNVAGVFNLRPATTYHLRI 952


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = -1

Query: 515 VPGTGLSVAGFFVHKPVQSLTLPITI 438
           VPG    +    +H P  S +LP TI
Sbjct: 82  VPGNLEQIGSRPLHPPASSTSLPATI 107


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 195,856
Number of Sequences: 438
Number of extensions: 4370
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20952180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)