Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20537
(686 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g31670.1 68417.m04497 ubiquitin carboxyl-terminal hydrolase f... 48 4e-06
At4g02220.1 68417.m00300 zinc finger (MYND type) family protein ... 45 4e-05
At1g17110.1 68414.m02085 ubiquitin-specific protease 15 (UBP15) ... 45 4e-05
At2g24640.1 68415.m02943 ubiquitin carboxyl-terminal hydrolase f... 44 7e-05
At2g17900.1 68415.m02073 zinc finger (MYND type) family protein ... 44 1e-04
At5g65450.1 68418.m08231 ubiquitin carboxyl-terminal hydrolase f... 42 3e-04
At4g24560.1 68417.m03520 ubiquitin-specific protease 16, putativ... 40 0.001
At1g70150.1 68414.m08072 zinc finger (MYND type) family protein ... 38 0.005
At1g67340.1 68414.m07665 zinc finger (MYND type) family protein ... 37 0.014
At5g50450.1 68418.m06247 zinc finger (MYND type) family protein ... 35 0.044
At1g10560.1 68414.m01189 armadillo/beta-catenin repeat family pr... 31 0.54
At3g50010.1 68416.m05468 DC1 domain-containing protein contains ... 31 0.95
At5g59930.1 68418.m07515 DC1 domain-containing protein / UV-B li... 29 2.9
At1g13110.1 68414.m01520 cytochrome P450 71B7 (CYP71B7) identica... 29 2.9
At3g28770.1 68416.m03591 expressed protein 29 3.8
At1g66450.1 68414.m07549 DC1 domain-containing protein contains ... 29 3.8
At1g13100.1 68414.m01519 cytochrome P450 71B29, putative (CYP71B... 28 5.0
At4g12750.1 68417.m02002 expressed protein 27 8.8
At4g02480.1 68417.m00335 AAA-type ATPase family protein contains... 27 8.8
>At4g31670.1 68417.m04497 ubiquitin carboxyl-terminal hydrolase
family protein / zinc finger (MYND type) family protein
similar to ubiquitin-specific protease 15 (UBP15)
[Arabidopsis thaliana] GI:11993475; contains Pfam
profiles PF00443: Ubiquitin carboxyl-terminal hydrolase,
PF01753: MYND finger
Length = 631
Score = 48.4 bits (110), Expect = 4e-06
Identities = 21/39 (53%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Frame = +3
Query: 378 CSSCGEEKPAKKCSKCKSVQYCDRECQRLHWFV-HKKAC 491
CS CG KKCS+CKSV+YC ECQR W H++ C
Sbjct: 61 CSVCGNFS-TKKCSRCKSVRYCSAECQRSDWSSGHQRNC 98
>At4g02220.1 68417.m00300 zinc finger (MYND type) family protein /
programmed cell death 2 C-terminal domain-containing
protein similar to SP|Q16342 Programmed cell death
protein 2 (Zinc finger protein Rp-8) {Homo sapiens};
contains Pfam profiles PF01753: MYND finger, PF04194:
Programmed cell death protein 2, C-terminal putative
domain
Length = 418
Score = 45.2 bits (102), Expect = 4e-05
Identities = 19/43 (44%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Frame = +3
Query: 372 PYCSSCGEEKPAKKCSKCKSVQYCDRECQRLHWFV-HKKACNR 497
P C+ CG K K CS CK+ +YC + Q LHW + HK C +
Sbjct: 186 PLCTWCGTWKGDKLCSGCKNARYCSPKHQALHWRLGHKTECQQ 228
>At1g17110.1 68414.m02085 ubiquitin-specific protease 15 (UBP15)
almost identical to ubiquitin-specific protease 15
GI:11993475 [Arabidopsis thaliana], 7 amino acid
difference
Length = 924
Score = 45.2 bits (102), Expect = 4e-05
Identities = 19/32 (59%), Positives = 24/32 (75%), Gaps = 2/32 (6%)
Frame = +3
Query: 402 PAK-KCSKCKSVQYCDRECQRLHWFV-HKKAC 491
PAK +CS+CKSV+YC +CQ +HW V HK C
Sbjct: 136 PAKTRCSRCKSVRYCSGKCQIIHWRVAHKDEC 167
>At2g24640.1 68415.m02943 ubiquitin carboxyl-terminal hydrolase
family protein / zinc finger (MYND type) family protein
similar to ubiquitin-specific protease 15 (UBP15)
[Arabidopsis thaliana] GI:11993475; contains Pfam
profiles PF00443: Ubiquitin carboxyl-terminal hydrolase,
PF01753: MYND finger
Length = 672
Score = 44.4 bits (100), Expect = 7e-05
Identities = 20/39 (51%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = +3
Query: 378 CSSCGEEKPAKKCSKCKSVQYCDRECQRLHW-FVHKKAC 491
CS CG+ KKCS+CKSV+YC CQ W HK C
Sbjct: 64 CSVCGKAT-TKKCSRCKSVRYCSAACQTSDWKSGHKLKC 101
>At2g17900.1 68415.m02073 zinc finger (MYND type) family protein /
SET domain-containing protein contains Pfam profiles
PF00856: SET domain, PF01753: MYND zinc finger (ZnF)
domain; confirmed by cDNA (Paola Vittorioso--accession
not assigned yet (paola.vittorioso@uniroma1.it)
Length = 480
Score = 43.6 bits (98), Expect = 1e-04
Identities = 15/38 (39%), Positives = 20/38 (52%)
Frame = +3
Query: 378 CSSCGEEKPAKKCSKCKSVQYCDRECQRLHWFVHKKAC 491
C C + KKCS C+ V YC CQ+ W +H+ C
Sbjct: 56 CDGCFKTNNLKKCSACQVVWYCGSSCQKSEWKLHRDEC 93
>At5g65450.1 68418.m08231 ubiquitin carboxyl-terminal hydrolase
family protein / zinc finger (MYND type) family protein
similar to ubiquitin-specific protease 16 (UBP16)
[Arabidopsis thaliana] GI:11993477; contains Pfam
profiles PF00443: Ubiquitin carboxyl-terminal hydrolase,
PF01753: MYND finger
Length = 731
Score = 42.3 bits (95), Expect = 3e-04
Identities = 23/69 (33%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Frame = +3
Query: 288 ALTSKDPPTALSVINCTINGQRGFLDAIPYCSSCGEEKPAKKCSKCKSVQYCDRECQRLH 467
AL +++ A V T++ + + C+ C +CS+CKSV+YC +CQ LH
Sbjct: 27 ALATEESYLAEEVRPATVDYGGDSVSDVYRCAVC-LYPTTTRCSQCKSVRYCSSKCQILH 85
Query: 468 W-FVHKKAC 491
W HK+ C
Sbjct: 86 WRRGHKEEC 94
>At4g24560.1 68417.m03520 ubiquitin-specific protease 16, putative
(UBP16) similar to ubiquitin-specific protease 16
GI:11993477 [Arabidopsis thaliana]
Length = 1008
Score = 40.3 bits (90), Expect = 0.001
Identities = 15/32 (46%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
Frame = +3
Query: 411 KCSKCKSVQYCDRECQRLHWFV-HKKACNRES 503
+CS+CK+V+YC +CQ +HW HK C+ S
Sbjct: 84 RCSRCKAVRYCSGKCQIIHWRQGHKDECHPAS 115
>At1g70150.1 68414.m08072 zinc finger (MYND type) family protein
contains Pfam profile PF01753: MYND finger
Length = 387
Score = 38.3 bits (85), Expect = 0.005
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +3
Query: 402 PAKKCSKCKSVQYCDRECQRLHWFVHKKACNR 497
P ++C +C +V YC Q HW HK+ C R
Sbjct: 16 PTRRCGQCGAVAYCSVSHQISHWSYHKEECER 47
>At1g67340.1 68414.m07665 zinc finger (MYND type) family protein /
F-box family protein
Length = 379
Score = 36.7 bits (81), Expect = 0.014
Identities = 19/50 (38%), Positives = 24/50 (48%), Gaps = 7/50 (14%)
Frame = +3
Query: 363 DAIPYCSSCGEEKPA------KKCSKCKSVQYCDRECQRLHWFV-HKKAC 491
D + CS G +P ++CS C V YC R CQ L W + HK C
Sbjct: 297 DGLRLCSHAGCGRPETRKHEFRRCSVCGVVNYCSRACQALDWKLRHKMDC 346
>At5g50450.1 68418.m06247 zinc finger (MYND type) family protein
contains Pfam profile PF01753: MYND finger
Length = 336
Score = 35.1 bits (77), Expect = 0.044
Identities = 14/29 (48%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Frame = +3
Query: 408 KKCSKCKSVQYCDRECQRLHWFV-HKKAC 491
++CS C V YC R CQ L W HK C
Sbjct: 277 RRCSVCGKVNYCSRGCQALDWRAKHKVEC 305
>At1g10560.1 68414.m01189 armadillo/beta-catenin repeat family
protein / U-box domain-containing protein contains Pfam
domain, PF00514: Armadillo/beta-catenin-like repeats and
Pfam, PF04564: U-box domain
Length = 697
Score = 31.5 bits (68), Expect = 0.54
Identities = 18/63 (28%), Positives = 30/63 (47%)
Frame = -2
Query: 499 SLLQAFLCTNQCNL*HSLSQYCTDLHLEHFFAGFSSPQELQYGMASKNPLCPLMVQFITD 320
S L F+C +C + L + D H H G +L G+ ++ LCP+ ++ +TD
Sbjct: 247 SSLMGFICYCRCII---LGRIERDDHHNHHEDGIKKDHDLIRGLKVEDLLCPISLEIMTD 303
Query: 319 RAV 311
V
Sbjct: 304 PVV 306
>At3g50010.1 68416.m05468 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 769
Score = 30.7 bits (66), Expect = 0.95
Identities = 10/28 (35%), Positives = 14/28 (50%)
Frame = +3
Query: 372 PYCSSCGEEKPAKKCSKCKSVQYCDREC 455
P+C C + P K +C +YC R C
Sbjct: 728 PFCFICKKRCPHKTFFQCNGFEYCSRSC 755
>At5g59930.1 68418.m07515 DC1 domain-containing protein / UV-B
light-insensitive protein, putative similar to ULI3
(UV-B light insensitive) [Arabidopsis thaliana]
GI:17225050; contains Pfam profile PF03107: DC1 domain
Length = 656
Score = 29.1 bits (62), Expect = 2.9
Identities = 12/21 (57%), Positives = 14/21 (66%), Gaps = 3/21 (14%)
Frame = +3
Query: 375 YCSSCGEEKPAK---KCSKCK 428
+C+ CGE KPAK CS CK
Sbjct: 81 FCALCGETKPAKYFYSCSTCK 101
>At1g13110.1 68414.m01520 cytochrome P450 71B7 (CYP71B7) identical
to (SP:Q96514) cytochrome P450 71B7 [Arabidopsis
thaliana]; PF|00067 Cytochrome P450 family. ESTs
gb|T44875, gb|T04814, gb|R65111, gb|T44310 and gb|T04541
come from this gene; identical to cDNA cytochrome P450
GI:1523795, ATCYP71B7
Length = 504
Score = 29.1 bits (62), Expect = 2.9
Identities = 16/57 (28%), Positives = 24/57 (42%)
Frame = +1
Query: 103 IKDKQKPSEKEEKKHDVVEIFAKKLLKPGKDGVSLDLMDSFLKDCVREFPLGSAQHS 273
+ D KP + + DVV++ + K KDG S L LK + + L S
Sbjct: 255 LDDHIKPGRQVSENPDVVDVMLDLMKKQEKDGESFKLTTDHLKGIISDIFLAGVNTS 311
>At3g28770.1 68416.m03591 expressed protein
Length = 2081
Score = 28.7 bits (61), Expect = 3.8
Identities = 16/46 (34%), Positives = 24/46 (52%)
Frame = +1
Query: 13 KREMTRGSETNEVMAFKYHYLSYILREIHNIKDKQKPSEKEEKKHD 150
K+E SET E+ + K +E + KD+QK EKE K+ +
Sbjct: 1156 KKENEEKSETKEIESSKSQKNEVDKKEKKSSKDQQKKKEKEMKESE 1201
>At1g66450.1 68414.m07549 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 700
Score = 28.7 bits (61), Expect = 3.8
Identities = 9/28 (32%), Positives = 14/28 (50%)
Frame = +3
Query: 372 PYCSSCGEEKPAKKCSKCKSVQYCDREC 455
P C +C + P K +C ++C R C
Sbjct: 660 PICKTCNKRCPFKVVFQCSGFKFCSRFC 687
>At1g13100.1 68414.m01519 cytochrome P450 71B29, putative (CYP71B29)
strong similarity to gb|X97864 cytochrome P450 and
identical to Cytochrome P450 71B29
(SP:Q9SAE4)[Arabidopsis thaliana];PF|00067 Cytochrome
P450 family
Length = 490
Score = 28.3 bits (60), Expect = 5.0
Identities = 17/59 (28%), Positives = 24/59 (40%), Gaps = 1/59 (1%)
Frame = +1
Query: 100 NIKDKQ-KPSEKEEKKHDVVEIFAKKLLKPGKDGVSLDLMDSFLKDCVREFPLGSAQHS 273
NI D KP K D++++ + K KDG S L LK + + L S
Sbjct: 247 NILDYHLKPGRKVADSSDIIDVVINMIKKQEKDGDSFKLTTDHLKGMISDIFLAGVSTS 305
>At4g12750.1 68417.m02002 expressed protein
Length = 1108
Score = 27.5 bits (58), Expect = 8.8
Identities = 14/60 (23%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
Frame = +3
Query: 327 INCTINGQRGFLDAIPYCSSCGE--EKPAKKCSKCKSVQYCDRECQRLHWFVHKKACNRE 500
+N + +R +LD++ C SC + + K C C + D + + + +H C R+
Sbjct: 907 LNSVKHRRRSYLDSLTRCKSCHDLYWRDEKHCKICHATFEVDIDLEE-RYAIHAATCMRK 965
>At4g02480.1 68417.m00335 AAA-type ATPase family protein contains Pfam
domain, PF00004: ATPase, AAA family; similar to Spastin
(Swiss-Prot:Q9UBP0) [Homo sapiens] and Spastin (Fragment)
(Swiss-Prot:Q9QYY8) [Mus musculus]; similar to
mitochondrial sorting protein 1 (MSP1) protein
(TAT-binding homolog 4) (Swiss-Prot:P28737)
[Saccharomyces cerevisiae]
Length = 1265
Score = 27.5 bits (58), Expect = 8.8
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 4/50 (8%)
Frame = +1
Query: 73 LSYILREIHNIKDKQKPSEKEEKKHDVVEIFAKKLLK----PGKDGVSLD 210
+SY L+ +H+I+++ K +K K F KKLL P GVS D
Sbjct: 914 ISYGLQTLHDIQNENKSLKKSLKDVVTENEFEKKLLSDVIPPSDIGVSFD 963
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,009,961
Number of Sequences: 28952
Number of extensions: 326007
Number of successful extensions: 962
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 937
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 962
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1457719448
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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