Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20536
         (577 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY819656-1|AAV70656.1|   56|Tribolium castaneum elongation facto...   113   1e-27
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      25   0.46 
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      25   0.46 
AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1 ...    25   0.61 
DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.    24   1.1  
AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less prot...    23   1.4  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    22   4.3  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    22   4.3  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    21   5.7  
DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.        21   5.7  
AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax pr...    21   5.7  
AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    21   7.5  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    21   9.9  
AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless prot...    21   9.9  

>AY819656-1|AAV70656.1|   56|Tribolium castaneum elongation factor
           1-alpha protein.
          Length = 56

 Score =  113 bits (271), Expect = 1e-27
 Identities = 53/56 (94%), Positives = 54/56 (96%)
 Frame = +3

Query: 315 LQDVYKIGGIGTVPVGRVETGVLKPGTIVVFAPANITTEVKSVEMHHEALQEAVPG 482
           LQDVYKIGGIGTVPVGRVETGVLKPG +VVFAPANITTEVKSVEMHHEAL EAVPG
Sbjct: 1   LQDVYKIGGIGTVPVGRVETGVLKPGMVVVFAPANITTEVKSVEMHHEALPEAVPG 56


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 25.0 bits (52), Expect = 0.46
 Identities = 12/24 (50%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
 Frame = +3

Query: 249 PHEALDAIL-PPARPTDKPLRLPL 317
           PHEA D  L PP  P  +P R P+
Sbjct: 727 PHEAFDVKLPPPPHPHHQPPRNPV 750



 Score = 21.4 bits (43), Expect = 5.7
 Identities = 8/28 (28%), Positives = 13/28 (46%)
 Frame = -1

Query: 169 CCLRAIQKWARKRQQLGCSQSS*CMRIL 86
           CC  A+      RQ +  S+   C+R +
Sbjct: 615 CCYHAVAPGTDIRQSIALSRKKKCIRYM 642


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 25.0 bits (52), Expect = 0.46
 Identities = 12/24 (50%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
 Frame = +3

Query: 249 PHEALDAIL-PPARPTDKPLRLPL 317
           PHEA D  L PP  P  +P R P+
Sbjct: 619 PHEAFDVKLPPPPHPHHQPPRNPV 642



 Score = 21.4 bits (43), Expect = 5.7
 Identities = 8/28 (28%), Positives = 13/28 (46%)
 Frame = -1

Query: 169 CCLRAIQKWARKRQQLGCSQSS*CMRIL 86
           CC  A+      RQ +  S+   C+R +
Sbjct: 507 CCYHAVAPGTDIRQSIALSRKKKCIRYM 534


>AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1
           protein protein.
          Length = 371

 Score = 24.6 bits (51), Expect = 0.61
 Identities = 11/24 (45%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
 Frame = -3

Query: 383 QHTSFN-SADGHGTNTTDFVYVLQ 315
           ++ SFN +A+GHG NT+   Y  Q
Sbjct: 280 EYNSFNWTANGHGHNTSSHNYYAQ 303


>DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.
          Length = 314

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = -3

Query: 470 FLESFVVHLHRFDFSSDVG 414
           FLE  + H  RF FSS VG
Sbjct: 68  FLEMTLAHHCRFKFSSSVG 86


>AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less
           protein.
          Length = 312

 Score = 23.4 bits (48), Expect = 1.4
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -3

Query: 428 SSDVGGGKDNNGTWFQHTSF 369
           ++ V GG +NNGT   H+ F
Sbjct: 182 AAQVSGGNNNNGTPGGHSGF 201


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
            variant 1 protein.
          Length = 1558

 Score = 21.8 bits (44), Expect = 4.3
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = -2

Query: 138  ESDSSWVVANLLDV*GYFLLDFLKSGLTVWWFSGIHFVYSYDE 10
            +S  ++ + N L V   FLL   K  L + W  G+    +YDE
Sbjct: 1267 QSVFAFFMMNALFVLIVFLLTLKKDYLHIKWPFGVKTNITYDE 1309


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase CHS1A
            protein.
          Length = 1558

 Score = 21.8 bits (44), Expect = 4.3
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = -2

Query: 138  ESDSSWVVANLLDV*GYFLLDFLKSGLTVWWFSGIHFVYSYDE 10
            +S  ++ + N L V   FLL   K  L + W  G+    +YDE
Sbjct: 1267 QSVFAFFMMNALFVLIVFLLTLKKDYLHIKWPFGVKTNITYDE 1309


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 21.4 bits (43), Expect = 5.7
 Identities = 11/32 (34%), Positives = 14/32 (43%)
 Frame = +3

Query: 339  GIGTVPVGRVETGVLKPGTIVVFAPANITTEV 434
            G+G +P         KP   V  AP  +TT V
Sbjct: 990  GLGLIPDNPSREDCTKPPEPVTPAPPQVTTGV 1021


>DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.
          Length = 414

 Score = 21.4 bits (43), Expect = 5.7
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +3

Query: 369 ETGVLKPGTIVVFAPANITTEVKS 440
           ETG ++PG I    P   T EV++
Sbjct: 96  ETGSIRPGVIGGSKPRVATPEVEN 119


>AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax
           protein.
          Length = 314

 Score = 21.4 bits (43), Expect = 5.7
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = -2

Query: 285 GQVAGWHRELHEAFSVSFAFFTLHL 211
           G VAG H E   A + ++  F L L
Sbjct: 19  GSVAGHHHEQSAAAAAAYRSFPLSL 43


>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = -2

Query: 258 LHEAFSVSFAFFTLHL 211
           +H  F  +F FF +HL
Sbjct: 178 MHLLFCCAFIFFNMHL 193


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like protein
            protein.
          Length = 1156

 Score = 20.6 bits (41), Expect = 9.9
 Identities = 10/44 (22%), Positives = 20/44 (45%)
 Frame = -1

Query: 361  PTGTVPIPPILYTSCRGRRRGLSVGRAGGRMASRAS*GIFRQLC 230
            P G++     ++ S  G   G ++  +GG+  S       ++LC
Sbjct: 955  PGGSLGALSSMFDSLSGNNTGDALAPSGGKKGSSHPLAALQKLC 998


>AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless
           protein.
          Length = 302

 Score = 20.6 bits (41), Expect = 9.9
 Identities = 10/30 (33%), Positives = 11/30 (36%)
 Frame = +1

Query: 268 PSCHLPAPLTSPCVFPCKTYTKSVVLVPCP 357
           PS   P P   P  F C  Y     + P P
Sbjct: 155 PSIIDPGPALPPAGFLCNNYLPLPQVPPLP 184


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 160,107
Number of Sequences: 336
Number of extensions: 3738
Number of successful extensions: 16
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 14308417
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)