Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20536
(577 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0) 157 8e-39
SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43) 48 4e-06
SB_19307| Best HMM Match : GTP_EFTU_D2 (HMM E-Value=0.068) 35 0.041
SB_25301| Best HMM Match : GTP_EFTU_D2 (HMM E-Value=0.066) 33 0.17
SB_58392| Best HMM Match : Peptidase_M16_C (HMM E-Value=1.2e-24) 30 1.6
SB_34586| Best HMM Match : Drf_FH1 (HMM E-Value=0.088) 29 3.6
SB_13701| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.8
SB_23862| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.8
SB_43213| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.3
SB_43004| Best HMM Match : FAD_binding_4 (HMM E-Value=1.4e-18) 28 6.3
SB_59169| Best HMM Match : Sre (HMM E-Value=3.3) 28 6.3
SB_621| Best HMM Match : SNF2_N (HMM E-Value=0) 28 6.3
SB_37693| Best HMM Match : PHD (HMM E-Value=8.7e-35) 27 8.3
>SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)
Length = 322
Score = 157 bits (380), Expect = 8e-39
Identities = 71/84 (84%), Positives = 79/84 (94%)
Frame = +3
Query: 255 EALDAILPPARPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGTIVVFAPANITTEV 434
E LD+ILPP+RP+ PLRLPLQDVYKIGGIGTVPVGRVETGVLKPGT+V F+P+NITTEV
Sbjct: 89 EGLDSILPPSRPSGLPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGTVVTFSPSNITTEV 148
Query: 435 KSVEMHHEALQEAVPGDNVGFNVK 506
KSVEMHHE+L EA+PGDNVGFNVK
Sbjct: 149 KSVEMHHESLAEALPGDNVGFNVK 172
Score = 41.9 bits (94), Expect = 4e-04
Identities = 18/26 (69%), Positives = 21/26 (80%)
Frame = +2
Query: 494 FQRKEVSVKELRRGYVAGDSKNNPPK 571
F K VSVK+++RG VAGD KNNPPK
Sbjct: 169 FNVKNVSVKDIKRGNVAGDFKNNPPK 194
Score = 31.9 bits (69), Expect = 0.39
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 6/37 (16%)
Frame = +1
Query: 166 NMLEPSTKMPWFKGWQVER------KEGKADGKCLMK 258
NM+ +++MPWFK W +ER KE A G L +
Sbjct: 53 NMITGTSQMPWFKQWTIERVDPATKKEANASGVTLFE 89
>SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)
Length = 547
Score = 48.4 bits (110), Expect = 4e-06
Identities = 19/41 (46%), Positives = 31/41 (75%)
Frame = +1
Query: 1 VKQLIVGVNKMDSTEPPYSEPRFEEIKKEVSSYIKKIGYNP 123
VK L++ VNKMD ++E R+EEIK +++ ++KK+G+NP
Sbjct: 282 VKHLVILVNKMDDPTVKWNEERYEEIKVKLTPFLKKVGFNP 322
>SB_19307| Best HMM Match : GTP_EFTU_D2 (HMM E-Value=0.068)
Length = 173
Score = 35.1 bits (77), Expect = 0.041
Identities = 19/69 (27%), Positives = 32/69 (46%)
Frame = +3
Query: 279 PARPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGTIVVFAPANITTEVKSVEMHHE 458
P R T L + + I G GT+ G + +G + V +T +VKS++M +
Sbjct: 104 PERTTSGSLLFAVDHCFSIRGQGTIMTGTILSGSVCVNDTVEIPSLKVTKKVKSMQMFKK 163
Query: 459 ALQEAVPGD 485
+ +A GD
Sbjct: 164 PVDKASQGD 172
>SB_25301| Best HMM Match : GTP_EFTU_D2 (HMM E-Value=0.066)
Length = 177
Score = 33.1 bits (72), Expect = 0.17
Identities = 16/76 (21%), Positives = 34/76 (44%), Gaps = 4/76 (5%)
Frame = +3
Query: 294 DKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGTIVVFAPANI----TTEVKSVEMHHEA 461
++P + D Y + G+GTV G G+++ ++ P + ++S+
Sbjct: 102 EEPSEFQIDDTYSVPGVGTVISGTCMKGIIRLNDTLLLGPDPLGQFQPVAIRSIHRKRMP 161
Query: 462 LQEAVPGDNVGFNVKK 509
++E G F++KK
Sbjct: 162 VKEVRGGQTASFSLKK 177
>SB_58392| Best HMM Match : Peptidase_M16_C (HMM E-Value=1.2e-24)
Length = 1064
Score = 29.9 bits (64), Expect = 1.6
Identities = 15/57 (26%), Positives = 27/57 (47%)
Frame = -3
Query: 494 TYIVSRYSFLESFVVHLHRFDFSSDVGGGKDNNGTWFQHTSFNSADGHGTNTTDFVY 324
T ++SRYS++E + H + + S + TW Q F++ H +N + Y
Sbjct: 106 TSLISRYSYIEKLMTHHYTYRHISGGDPLHIPDLTWEQLKKFHATHYHPSNARFYTY 162
>SB_34586| Best HMM Match : Drf_FH1 (HMM E-Value=0.088)
Length = 665
Score = 28.7 bits (61), Expect = 3.6
Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Frame = -1
Query: 490 TLSPGTASWRASWCISTDLTSVVMLAGAKTTMVPGFNT-PVSTLPTGTVPIP 338
TLSPGT + + S +A +TT+ P T PV+TLP + P
Sbjct: 32 TLSPGTTAAPETTVAPETTVSPETIAEPETTVAPETTTAPVTTLPPDSTMAP 83
>SB_13701| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 476
Score = 28.3 bits (60), Expect = 4.8
Identities = 8/25 (32%), Positives = 14/25 (56%)
Frame = +1
Query: 154 WHGDNMLEPSTKMPWFKGWQVERKE 228
+H DN + PWF+ W +++E
Sbjct: 191 YHNDNKTHSTQTGPWFRAWSNQKRE 215
>SB_23862| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3112
Score = 28.3 bits (60), Expect = 4.8
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 5/52 (9%)
Frame = +1
Query: 37 STEPPYSEPRFEEIKKE----VSSYIKKIGYNPA-AVAFVPISGWHGDNMLE 177
ST S+ FE KK +S+ K +P+ + FVP WHG+ M+E
Sbjct: 1062 STRANSSQGGFEAKKKSWTKLSASFAKPEVVDPSDKIRFVPAVNWHGEQMIE 1113
>SB_43213| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 919
Score = 27.9 bits (59), Expect = 6.3
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = -2
Query: 210 PSLEPRHFG*RLQHVVSVPSRNGHESDSSWVVANLLD 100
P+LEP + G L + S S GH+ D+ ++ LL+
Sbjct: 378 PNLEPSYIGKMLATIESTLSAKGHQEDAEEFLSCLLN 414
>SB_43004| Best HMM Match : FAD_binding_4 (HMM E-Value=1.4e-18)
Length = 1067
Score = 27.9 bits (59), Expect = 6.3
Identities = 23/80 (28%), Positives = 38/80 (47%)
Frame = -3
Query: 296 VSGAGRWQDGIESFMRHFPSALPSLRSTCHPLNQGILVEGSNMLSPCHPEMGTKATAAGL 117
V R +D +E+ +H+ ALP L S N G V G+ M+S +G + AA +
Sbjct: 439 VEAGMRLKDFVETLDKHYGLALPVLGS-----NAGQTVAGAAMVSSHGSGLGAASLAASV 493
Query: 116 *PIFLMYEDTSFLISSNLGS 57
+ L+ + + +LGS
Sbjct: 494 VGVHLI-TSSGIQVKLSLGS 512
>SB_59169| Best HMM Match : Sre (HMM E-Value=3.3)
Length = 447
Score = 27.9 bits (59), Expect = 6.3
Identities = 12/42 (28%), Positives = 22/42 (52%)
Frame = -1
Query: 445 STDLTSVVMLAGAKTTMVPGFNTPVSTLPTGTVPIPPILYTS 320
+TD+TS+ M+ TT + ++T T + I I+ T+
Sbjct: 234 TTDITSITMIITTSTTDITSITMIITTTTTDDISITMIIITT 275
Score = 27.5 bits (58), Expect = 8.3
Identities = 20/81 (24%), Positives = 35/81 (43%), Gaps = 1/81 (1%)
Frame = -1
Query: 559 VFGVTSNITT-TQFLDGHFFTLKPTLSPGTASWRASWCISTDLTSVVMLAGAKTTMVPGF 383
+ +T ITT T + T+ + + T+ +TD+TS+ M+ TT +
Sbjct: 110 ITSITMIITTSTTDITSITMTITTSTTDITSKTMIITTSTTDITSITMIITTSTTDITSI 169
Query: 382 NTPVSTLPTGTVPIPPILYTS 320
++T T I I+ TS
Sbjct: 170 TMIITTSTTDITSITMIITTS 190
>SB_621| Best HMM Match : SNF2_N (HMM E-Value=0)
Length = 1432
Score = 27.9 bits (59), Expect = 6.3
Identities = 16/50 (32%), Positives = 22/50 (44%)
Frame = -3
Query: 380 HTSFNSADGHGTNTTDFVYVLQGKTQGLVSGAGRWQDGIESFMRHFPSAL 231
HT+ + D G Y+ K QGL G W+DG R+F S +
Sbjct: 36 HTTVKNLDEFGNTVNQIDYLC--KWQGLPYGESTWEDG-NLISRYFQSEI 82
>SB_37693| Best HMM Match : PHD (HMM E-Value=8.7e-35)
Length = 2049
Score = 27.5 bits (58), Expect = 8.3
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = +2
Query: 176 SLQPKCLGSRDGRWSVKKAKLTENAS*SSRCHPATCP 286
S P SR+G K+ +LT++A S PAT P
Sbjct: 1932 SPSPPTSASREGTRKAKRPRLTDSAKSSRSASPATKP 1968
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,282,142
Number of Sequences: 59808
Number of extensions: 495604
Number of successful extensions: 1886
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1664
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1882
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1373676929
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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