Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20536
(577 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g60390.1 68418.m07574 elongation factor 1-alpha / EF-1-alpha ... 149 1e-36
At1g07940.1 68414.m00863 elongation factor 1-alpha / EF-1-alpha ... 149 1e-36
At1g07930.1 68414.m00862 elongation factor 1-alpha / EF-1-alpha ... 149 1e-36
At1g07920.1 68414.m00861 elongation factor 1-alpha / EF-1-alpha ... 149 1e-36
At4g20360.1 68417.m02971 elongation factor Tu / EF-Tu (TUFA) ide... 62 2e-10
At4g02930.1 68417.m00399 elongation factor Tu, putative / EF-Tu,... 60 1e-09
At1g18070.1 68414.m02236 EF-1-alpha-related GTP-binding protein,... 53 2e-07
At5g10630.1 68418.m01231 elongation factor 1-alpha, putative / E... 50 8e-07
At5g39900.1 68418.m04839 GTP-binding protein LepA, putative GTP-... 30 1.3
At4g29900.1 68417.m04254 calcium-transporting ATPase, plasma mem... 29 2.9
At2g39560.1 68415.m04853 expressed protein 29 2.9
At1g27900.1 68414.m03419 RNA helicase, putative similar to SP|Q1... 29 2.9
At3g43240.1 68416.m04564 ARID/BRIGHT DNA-binding domain-containi... 28 3.9
At3g20440.1 68416.m02588 glycoside hydrolase family 13 protein s... 28 3.9
At5g51710.1 68418.m06413 K+ efflux antiporter, putative (KEA5) M... 28 5.1
At1g32190.1 68414.m03959 expressed protein 28 5.1
At5g44785.2 68418.m05490 expressed protein contains Pfam PF05329... 27 6.8
At5g44785.1 68418.m05489 expressed protein contains Pfam PF05329... 27 6.8
At5g13580.1 68418.m01570 ABC transporter family protein 27 6.8
At4g01910.1 68417.m00251 DC1 domain-containing protein contains ... 27 6.8
At1g35610.1 68414.m04421 DC1 domain-containing protein contains ... 27 6.8
At3g19510.1 68416.m02472 homeobox protein (HAT 3.1) identical to... 27 9.0
>At5g60390.1 68418.m07574 elongation factor 1-alpha / EF-1-alpha
identical to SWISS-PROT:P13905 elongation factor 1-alpha
(EF-1-alpha) [Arabidopsis thaliana]
Length = 449
Score = 149 bits (361), Expect = 1e-36
Identities = 68/84 (80%), Positives = 75/84 (89%)
Frame = +3
Query: 255 EALDAILPPARPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGTIVVFAPANITTEV 434
EALD I P RP+DKPLRLPLQDVYKIGGIGTVPVGRVETG++KPG +V FAP +TTEV
Sbjct: 218 EALDQINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGMIKPGMVVTFAPTGLTTEV 277
Query: 435 KSVEMHHEALQEAVPGDNVGFNVK 506
KSVEMHHE+L EA+PGDNVGFNVK
Sbjct: 278 KSVEMHHESLLEALPGDNVGFNVK 301
Score = 100 bits (239), Expect = 8e-22
Identities = 43/69 (62%), Positives = 55/69 (79%)
Frame = +1
Query: 1 VKQLIVGVNKMDSTEPPYSEPRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEP 180
VKQ+I NKMD+T P YS+ R++EI KEVSSY+KK+GYNP + FVPISG+ GDNM+E
Sbjct: 145 VKQMICCCNKMDATTPKYSKARYDEIIKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIER 204
Query: 181 STKMPWFKG 207
ST + W+KG
Sbjct: 205 STNLDWYKG 213
Score = 39.9 bits (89), Expect = 0.001
Identities = 17/28 (60%), Positives = 23/28 (82%)
Frame = +2
Query: 494 FQRKEVSVKELRRGYVAGDSKNNPPKGA 577
F K V+VK+L+RGYVA +SK++P KGA
Sbjct: 298 FNVKNVAVKDLKRGYVASNSKDDPAKGA 325
>At1g07940.1 68414.m00863 elongation factor 1-alpha / EF-1-alpha
identical to GB:CAA34456 from [Arabidopsis thaliana]
(Plant Mol. Biol. 14 (1), 107-110 (1990))
Length = 449
Score = 149 bits (361), Expect = 1e-36
Identities = 68/84 (80%), Positives = 75/84 (89%)
Frame = +3
Query: 255 EALDAILPPARPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGTIVVFAPANITTEV 434
EALD I P RP+DKPLRLPLQDVYKIGGIGTVPVGRVETG++KPG +V FAP +TTEV
Sbjct: 218 EALDQINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGMIKPGMVVTFAPTGLTTEV 277
Query: 435 KSVEMHHEALQEAVPGDNVGFNVK 506
KSVEMHHE+L EA+PGDNVGFNVK
Sbjct: 278 KSVEMHHESLLEALPGDNVGFNVK 301
Score = 100 bits (239), Expect = 8e-22
Identities = 43/69 (62%), Positives = 55/69 (79%)
Frame = +1
Query: 1 VKQLIVGVNKMDSTEPPYSEPRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEP 180
VKQ+I NKMD+T P YS+ R++EI KEVSSY+KK+GYNP + FVPISG+ GDNM+E
Sbjct: 145 VKQMICCCNKMDATTPKYSKARYDEIIKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIER 204
Query: 181 STKMPWFKG 207
ST + W+KG
Sbjct: 205 STNLDWYKG 213
Score = 39.9 bits (89), Expect = 0.001
Identities = 17/28 (60%), Positives = 23/28 (82%)
Frame = +2
Query: 494 FQRKEVSVKELRRGYVAGDSKNNPPKGA 577
F K V+VK+L+RGYVA +SK++P KGA
Sbjct: 298 FNVKNVAVKDLKRGYVASNSKDDPAKGA 325
>At1g07930.1 68414.m00862 elongation factor 1-alpha / EF-1-alpha
identical to GB:CAA34456 from [Arabidopsis thaliana]
(Plant Mol. Biol. 14 (1), 107-110 (1990))
Length = 449
Score = 149 bits (361), Expect = 1e-36
Identities = 68/84 (80%), Positives = 75/84 (89%)
Frame = +3
Query: 255 EALDAILPPARPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGTIVVFAPANITTEV 434
EALD I P RP+DKPLRLPLQDVYKIGGIGTVPVGRVETG++KPG +V FAP +TTEV
Sbjct: 218 EALDQINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGMIKPGMVVTFAPTGLTTEV 277
Query: 435 KSVEMHHEALQEAVPGDNVGFNVK 506
KSVEMHHE+L EA+PGDNVGFNVK
Sbjct: 278 KSVEMHHESLLEALPGDNVGFNVK 301
Score = 100 bits (239), Expect = 8e-22
Identities = 43/69 (62%), Positives = 55/69 (79%)
Frame = +1
Query: 1 VKQLIVGVNKMDSTEPPYSEPRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEP 180
VKQ+I NKMD+T P YS+ R++EI KEVSSY+KK+GYNP + FVPISG+ GDNM+E
Sbjct: 145 VKQMICCCNKMDATTPKYSKARYDEIIKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIER 204
Query: 181 STKMPWFKG 207
ST + W+KG
Sbjct: 205 STNLDWYKG 213
Score = 39.9 bits (89), Expect = 0.001
Identities = 17/28 (60%), Positives = 23/28 (82%)
Frame = +2
Query: 494 FQRKEVSVKELRRGYVAGDSKNNPPKGA 577
F K V+VK+L+RGYVA +SK++P KGA
Sbjct: 298 FNVKNVAVKDLKRGYVASNSKDDPAKGA 325
>At1g07920.1 68414.m00861 elongation factor 1-alpha / EF-1-alpha
identical to GB:CAA34456 from [Arabidopsis thaliana]
(Plant Mol. Biol. 14 (1), 107-110 (1990))
Length = 449
Score = 149 bits (361), Expect = 1e-36
Identities = 68/84 (80%), Positives = 75/84 (89%)
Frame = +3
Query: 255 EALDAILPPARPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGTIVVFAPANITTEV 434
EALD I P RP+DKPLRLPLQDVYKIGGIGTVPVGRVETG++KPG +V FAP +TTEV
Sbjct: 218 EALDQINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGMIKPGMVVTFAPTGLTTEV 277
Query: 435 KSVEMHHEALQEAVPGDNVGFNVK 506
KSVEMHHE+L EA+PGDNVGFNVK
Sbjct: 278 KSVEMHHESLLEALPGDNVGFNVK 301
Score = 100 bits (239), Expect = 8e-22
Identities = 43/69 (62%), Positives = 55/69 (79%)
Frame = +1
Query: 1 VKQLIVGVNKMDSTEPPYSEPRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEP 180
VKQ+I NKMD+T P YS+ R++EI KEVSSY+KK+GYNP + FVPISG+ GDNM+E
Sbjct: 145 VKQMICCCNKMDATTPKYSKARYDEIIKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIER 204
Query: 181 STKMPWFKG 207
ST + W+KG
Sbjct: 205 STNLDWYKG 213
Score = 39.9 bits (89), Expect = 0.001
Identities = 17/28 (60%), Positives = 23/28 (82%)
Frame = +2
Query: 494 FQRKEVSVKELRRGYVAGDSKNNPPKGA 577
F K V+VK+L+RGYVA +SK++P KGA
Sbjct: 298 FNVKNVAVKDLKRGYVASNSKDDPAKGA 325
>At4g20360.1 68417.m02971 elongation factor Tu / EF-Tu (TUFA)
identical to SWISS-PROT:P17745 elongation factor Tu,
chloroplast precursor (EF-Tu) [Arabidopsis thaliana]
Length = 476
Score = 62.5 bits (145), Expect = 2e-10
Identities = 39/103 (37%), Positives = 53/103 (51%), Gaps = 3/103 (2%)
Frame = +3
Query: 255 EALDAILP-PARPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGTIVVFAPANITTE 431
+A+D +P P R T+ P L ++DV+ I G GTV GRVE G +K G V T
Sbjct: 271 DAVDDYIPIPQRQTELPFLLAVEDVFSITGRGTVATGRVERGTVKVGETVDLVGLRETRS 330
Query: 432 --VKSVEMHHEALQEAVPGDNVGFNVKKCPSRNCVVVMLLVTP 554
V VEM + L EA+ GDNVG ++ + M+L P
Sbjct: 331 YTVTGVEMFQKILDEALAGDNVGLLLRGIQKADIQRGMVLAKP 373
>At4g02930.1 68417.m00399 elongation factor Tu, putative / EF-Tu,
putative similar to mitochondrial elongation factor Tu
[Arabidopsis thaliana] gi|1149571|emb|CAA61511
Length = 454
Score = 60.1 bits (139), Expect = 1e-09
Identities = 36/106 (33%), Positives = 53/106 (50%), Gaps = 6/106 (5%)
Frame = +3
Query: 255 EALDAILP-PARPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGTIVVF-----APA 416
+A+D +P P R DKP +P++DV+ I G GTV GR+E GV+K G V
Sbjct: 251 DAVDEYIPDPVRVLDKPFLMPIEDVFSIQGRGTVATGRIEQGVIKVGEEVEILGLREGGV 310
Query: 417 NITTEVKSVEMHHEALQEAVPGDNVGFNVKKCPSRNCVVVMLLVTP 554
+ + V VEM + L GDNVG ++ + M++ P
Sbjct: 311 PLKSTVTGVEMFKKILDNGQAGDNVGLLLRGLKREDIQRGMVIAKP 356
>At1g18070.1 68414.m02236 EF-1-alpha-related GTP-binding protein,
putative similar to EF-1-alpha-related GTP-binding
protein gi|1009232|gb|AAA79032
Length = 532
Score = 52.8 bits (121), Expect = 2e-07
Identities = 29/72 (40%), Positives = 44/72 (61%), Gaps = 3/72 (4%)
Frame = +1
Query: 1 VKQLIVGVNKMDSTEPPYSEPRFEEIKKEVSSYIKKIGYNPAA-VAFVPISGWHGDNMLE 177
V +LIV VNKMD +S+ R++EI++++ ++K GYN V F+PISG G NM +
Sbjct: 239 VSKLIVVVNKMDDPTVNWSKERYDEIEQKMVPFLKASGYNTKKDVVFLPISGLMGKNMDQ 298
Query: 178 PSTK--MPWFKG 207
+ PW+ G
Sbjct: 299 RMGQEICPWWSG 310
Score = 50.8 bits (116), Expect = 6e-07
Identities = 26/79 (32%), Positives = 46/79 (58%)
Frame = +3
Query: 255 EALDAILPPARPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGTIVVFAPANITTEV 434
E LD+I P R + P R+P+ D +K +GTV +G+VE+G ++ G +V P +V
Sbjct: 315 EVLDSIEIPPRDPNGPFRMPIIDKFK--DMGTVVMGKVESGSIREGDSLVVMPNKEQVKV 372
Query: 435 KSVEMHHEALQEAVPGDNV 491
++ + ++ A PG+N+
Sbjct: 373 VAIYCDEDKVKRAGPGENL 391
>At5g10630.1 68418.m01231 elongation factor 1-alpha, putative /
EF-1-alpha, putative contains similarity to
SWISS-PROT:Q9YAV0 elongation factor 1-alpha (EF-1-alpha)
[Aeropyrum pernix]
Length = 667
Score = 50.4 bits (115), Expect = 8e-07
Identities = 26/80 (32%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Frame = +3
Query: 255 EALDAILPPARPTDKPLRLPLQDVYKIGGIGTVPV-GRVETGVLKPGTIVVFAPANITTE 431
+A+D++ P R KPL +P+ D + G V G++E G ++PG+ V+ P+
Sbjct: 452 DAVDSVKSPDRDVSKPLLMPICDAVRSTSQGQVSACGKLEAGAVRPGSKVMVMPSGDQGT 511
Query: 432 VKSVEMHHEALQEAVPGDNV 491
++S+E +A A GDNV
Sbjct: 512 IRSLERDSQACTIARAGDNV 531
Score = 45.6 bits (103), Expect = 2e-05
Identities = 23/72 (31%), Positives = 43/72 (59%), Gaps = 3/72 (4%)
Frame = +1
Query: 1 VKQLIVGVNKMDSTEPPYSEPRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNML-E 177
V+Q+IV +NKMD YS+ RF+ IK+ V S+++ + +++ ++P+S N++
Sbjct: 378 VEQVIVAINKMDIVG--YSKERFDLIKQHVGSFLQSCRFKDSSLTWIPLSAMENQNLVAA 435
Query: 178 PSTK--MPWFKG 207
PS W++G
Sbjct: 436 PSDNRLSSWYQG 447
>At5g39900.1 68418.m04839 GTP-binding protein LepA, putative
GTP-binding protein GUF1 - Saccharomyces cerevisiae,
PIR:S50374
Length = 661
Score = 29.9 bits (64), Expect = 1.3
Identities = 21/68 (30%), Positives = 32/68 (47%)
Frame = +3
Query: 261 LDAILPPARPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGTIVVFAPANITTEVKS 440
++ I PP ++ PLR+ L D + G + V G+L G V FA + + EV
Sbjct: 241 IERIPPPPGISESPLRMLLFDSFFNEYKGVICYVSVVDGMLSKGDKVSFAASGQSYEVLD 300
Query: 441 VEMHHEAL 464
V + H L
Sbjct: 301 VGIMHPEL 308
>At4g29900.1 68417.m04254 calcium-transporting ATPase, plasma
membrane-type, putative / Ca2+-ATPase, putative (ACA10)
identical to SP|Q9SZR1 Potential calcium-transporting
ATPase 10, plasma membrane-type (EC 3.6.3.8)
(Ca(2+)-ATPase isoform 10) {Arabidopsis thaliana};
similar to SP|Q9LF79 Calcium-transporting ATPase 8,
plasma membrane-type (EC 3.6.3.8) (Ca(2+)-ATPase isoform
8) {Arabidopsis thaliana}
Length = 1069
Score = 28.7 bits (61), Expect = 2.9
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = -1
Query: 478 GTASWRASWCISTDLTSVVMLAGAKTTMVPGFNT 377
G + WR W S DLT ++++ A ++ G T
Sbjct: 178 GRSFWRFVWEASQDLTLIILIVAAVASLALGIKT 211
>At2g39560.1 68415.m04853 expressed protein
Length = 233
Score = 28.7 bits (61), Expect = 2.9
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = -1
Query: 397 MVPGFNTPVSTLPTGTVPIPPILYTSCRGRRRGLS 293
+ P + TP ++ T P+ P+L SC GR+ +S
Sbjct: 144 ITPPYLTPRASPSLFTPPLTPLLMESCNGRKEEIS 178
>At1g27900.1 68414.m03419 RNA helicase, putative similar to
SP|Q14562 ATP-dependent helicase DDX8 (RNA helicase
HRH1) (DEAH-box protein 8) {Homo sapiens}; contains Pfam
profiles PF04408: Helicase associated domain (HA2),
PF00271: Helicase conserved C-terminal domain
Length = 700
Score = 28.7 bits (61), Expect = 2.9
Identities = 16/42 (38%), Positives = 25/42 (59%)
Frame = -1
Query: 499 LKPTLSPGTASWRASWCISTDLTSVVMLAGAKTTMVPGFNTP 374
L+P+LS + C+S LT V ML+ A+TT++P + P
Sbjct: 428 LEPSLSRTLIEANETGCLSQALTVVAMLS-AETTLLPARSKP 468
>At3g43240.1 68416.m04564 ARID/BRIGHT DNA-binding domain-containing
protein contains Pfam profile PF01388: ARID/BRIGHT DNA
binding domain
Length = 747
Score = 28.3 bits (60), Expect = 3.9
Identities = 13/34 (38%), Positives = 16/34 (47%)
Frame = +3
Query: 108 DWLQPSCCRFRAHFWMARRQHVGAFNQNALVQGM 209
DW+ C AHF RR +GAF A G+
Sbjct: 687 DWVNCGSCGEWAHFGCDRRPGLGAFKDYAKTDGL 720
>At3g20440.1 68416.m02588 glycoside hydrolase family 13 protein
similar to 1,4-alpha-glucan branching enzyme [Solanum
tuberosum] GI:1621012, 1,4-alpha-glucan branching enzyme
(EC 2.4.1.18) from [Homo sapiens] SP|Q04446, {Solanum
tuberosum} SP|P30924; contains Pfam profiles: PF00128
Alpha amylase catalytic domain, PF02922 Isoamylase
N-terminal domain
Length = 777
Score = 28.3 bits (60), Expect = 3.9
Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 3/33 (9%)
Frame = +1
Query: 55 SEPR---FEEIKKEVSSYIKKIGYNPAAVAFVP 144
SEP+ FEE K+V ++K+ GYN + VP
Sbjct: 257 SEPKVSTFEEFTKKVLPHVKRAGYNAIQLIGVP 289
>At5g51710.1 68418.m06413 K+ efflux antiporter, putative (KEA5)
Monovalent cation:proton antiporter family 2 (CPA2
family) member, PMID:11500563; related to
glutathione-regulated potassium-efflux system protein
[Escherichia coli] GP|606284|gb|AAA58147
Length = 568
Score = 27.9 bits (59), Expect = 5.1
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = +1
Query: 61 PRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNM 171
PRF ++ ++SS ++ Y AAVAF +S W D +
Sbjct: 354 PRFLKLMIQLSSQTNEL-YQLAAVAFCLLSAWCSDKL 389
>At1g32190.1 68414.m03959 expressed protein
Length = 422
Score = 27.9 bits (59), Expect = 5.1
Identities = 11/28 (39%), Positives = 14/28 (50%)
Frame = +1
Query: 208 WQVERKEGKADGKCLMKLSMPSCHLPAP 291
WQ R+ ++ G C L PSC P P
Sbjct: 283 WQEIRRRDESTGCCCSGLCRPSCSCPKP 310
>At5g44785.2 68418.m05490 expressed protein contains Pfam PF05329:
Protein of unknown function (DUF731)
Length = 442
Score = 27.5 bits (58), Expect = 6.8
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = +1
Query: 37 STEPPYSEPRFEEIKKEVSSYIKKIGYNPAAVAFVPIS 150
+TE + P+ E K E+S++I IG+ V F P S
Sbjct: 63 ATEKESTPPKKIEYKPEISNWINLIGFVEQPVQFGPCS 100
>At5g44785.1 68418.m05489 expressed protein contains Pfam PF05329:
Protein of unknown function (DUF731)
Length = 440
Score = 27.5 bits (58), Expect = 6.8
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = +1
Query: 37 STEPPYSEPRFEEIKKEVSSYIKKIGYNPAAVAFVPIS 150
+TE + P+ E K E+S++I IG+ V F P S
Sbjct: 63 ATEKESTPPKKIEYKPEISNWINLIGFVEQPVQFGPCS 100
>At5g13580.1 68418.m01570 ABC transporter family protein
Length = 727
Score = 27.5 bits (58), Expect = 6.8
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = -1
Query: 448 ISTDLTSVVMLAGAKTTMVPGFNTPVSTLPTGTVP 344
IS ++ +++GA TT ++PVST+PT P
Sbjct: 384 ISASISKGKLVSGATTTTHSSGSSPVSTIPTFANP 418
>At4g01910.1 68417.m00251 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 651
Score = 27.5 bits (58), Expect = 6.8
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = +2
Query: 377 CVETRYHCCLCPRQHHY*SQIC 442
C R+HC LC R+ +Y S C
Sbjct: 73 CSNLRFHCDLCGRRTNYLSYYC 94
>At1g35610.1 68414.m04421 DC1 domain-containing protein contains
Pfam protein PF03107 DC1 domain
Length = 612
Score = 27.5 bits (58), Expect = 6.8
Identities = 9/26 (34%), Positives = 14/26 (53%)
Frame = -2
Query: 393 YLVSTHQFQLCRRARYQYHRFCIRLA 316
Y + +HQF C++ Y H C L+
Sbjct: 334 YPIVSHQFYHCKKCNYSLHEVCAGLS 359
>At3g19510.1 68416.m02472 homeobox protein (HAT 3.1) identical to
homeotic protein HAT 3.1 (GI:11994474) [Arabidopsis
thaliana]
Length = 723
Score = 27.1 bits (57), Expect = 9.0
Identities = 8/38 (21%), Positives = 20/38 (52%)
Frame = +1
Query: 58 EPRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNM 171
+ + IKK++ ++ +I Y + + + GW G ++
Sbjct: 174 DDEYTRIKKKLRYFLNRINYEQSLIDAYSLEGWKGSSL 211
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,925,405
Number of Sequences: 28952
Number of extensions: 346287
Number of successful extensions: 1246
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 1194
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1242
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1121903184
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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