Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20535
(501 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_22050| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.93
SB_39921| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.6
SB_48688| Best HMM Match : Ldl_recept_a (HMM E-Value=7.8e-26) 29 2.8
SB_30577| Best HMM Match : Ldl_recept_a (HMM E-Value=2.8e-25) 29 2.8
SB_48812| Best HMM Match : AFP (HMM E-Value=8.5) 28 3.8
SB_25976| Best HMM Match : RVT_1 (HMM E-Value=5.3e-22) 28 3.8
SB_27977| Best HMM Match : ARID (HMM E-Value=1.6e-26) 28 3.8
SB_42882| Best HMM Match : F5_F8_type_C (HMM E-Value=0) 28 5.0
SB_7889| Best HMM Match : VWC (HMM E-Value=2.6) 28 5.0
SB_58864| Best HMM Match : VWC (HMM E-Value=0.0031) 27 6.6
SB_43651| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.6
SB_11394| Best HMM Match : GntR (HMM E-Value=7.9) 27 6.6
SB_44500| Best HMM Match : DUF1693 (HMM E-Value=4) 27 8.7
SB_8535| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.7
SB_197| Best HMM Match : LISCH7 (HMM E-Value=1.3) 27 8.7
SB_22833| Best HMM Match : ATP-synt_8 (HMM E-Value=5.9) 27 8.7
SB_8332| Best HMM Match : PDZ (HMM E-Value=1.3e-17) 27 8.7
>SB_22050| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 233
Score = 30.3 bits (65), Expect = 0.93
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = +1
Query: 145 CVSHNTGTCPESSCACPEISCACPETSC 228
CVS+ P + ACP ++ AC SC
Sbjct: 80 CVSYRYDRVPYLTSACPNVTSACQRVSC 107
>SB_39921| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 210
Score = 29.5 bits (63), Expect = 1.6
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = +1
Query: 142 TCVSHNTGTCPESSCACPEISCACPETSCACPESS 246
T T P+++ A PE + A PE + A PE++
Sbjct: 33 TAAPDATTAAPDATTAAPEATTAAPEATTAAPEAT 67
Score = 28.7 bits (61), Expect = 2.8
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = +1
Query: 142 TCVSHNTGTCPESSCACPEISCACPETSCACPESS 246
T T P+++ A P+ + A PE + A PE++
Sbjct: 26 TAAPMETTAAPDATTAAPDATTAAPEATTAAPEAT 60
Score = 27.9 bits (59), Expect = 5.0
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = +1
Query: 142 TCVSHNTGTCPESSCACPEISCACPETSCACP 237
T T PE++ A PE + A PE + A P
Sbjct: 40 TAAPDATTAAPEATTAAPEATTAAPEATTAAP 71
>SB_48688| Best HMM Match : Ldl_recept_a (HMM E-Value=7.8e-26)
Length = 351
Score = 28.7 bits (61), Expect = 2.8
Identities = 12/35 (34%), Positives = 15/35 (42%)
Frame = +1
Query: 145 CVSHNTGTCPESSCACPEISCACPETSCACPESSC 249
CV H+ E +CAC CP+ C P C
Sbjct: 63 CVDHSD----ERNCACRSAEFKCPDGKCVHPSKFC 93
>SB_30577| Best HMM Match : Ldl_recept_a (HMM E-Value=2.8e-25)
Length = 147
Score = 28.7 bits (61), Expect = 2.8
Identities = 12/35 (34%), Positives = 15/35 (42%)
Frame = +1
Query: 145 CVSHNTGTCPESSCACPEISCACPETSCACPESSC 249
CV H+ E +CAC CP+ C P C
Sbjct: 63 CVDHSD----ERNCACRSAEFKCPDGKCVHPSKFC 93
>SB_48812| Best HMM Match : AFP (HMM E-Value=8.5)
Length = 78
Score = 28.3 bits (60), Expect = 3.8
Identities = 10/29 (34%), Positives = 15/29 (51%)
Frame = +1
Query: 148 VSHNTGTCPESSCACPEISCACPETSCAC 234
++HN T S C CP ++C+ E C
Sbjct: 24 LTHNVSTTSSSFCTCPFLACSGGEDCTYC 52
>SB_25976| Best HMM Match : RVT_1 (HMM E-Value=5.3e-22)
Length = 1421
Score = 28.3 bits (60), Expect = 3.8
Identities = 11/43 (25%), Positives = 16/43 (37%)
Frame = +1
Query: 127 CKLY*TCVSHNTGTCPESSCACPEISCACPETSCACPESSCLC 255
C+L T + H C P +C C P ++C C
Sbjct: 990 CRLMDTGIPHTACQCRLMDTGLPHTACQCRLIDTGLPHTACQC 1032
Score = 27.9 bits (59), Expect = 5.0
Identities = 11/43 (25%), Positives = 17/43 (39%)
Frame = +1
Query: 127 CKLY*TCVSHNTGTCPESSCACPEISCACPETSCACPESSCLC 255
C+L T ++H C P +C C P ++C C
Sbjct: 920 CRLMDTGLTHTACQCRLIDTGLPHTACQCRFMDTGLPHTACQC 962
Score = 27.5 bits (58), Expect = 6.6
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = +1
Query: 145 CVSHNTGTCPESSCACPEISCACPETSCAC 234
C +TG P ++C C I P+T+C C
Sbjct: 892 CCLMDTGL-PHTACQCCLIGTGLPQTACQC 920
Score = 27.5 bits (58), Expect = 6.6
Identities = 11/43 (25%), Positives = 16/43 (37%)
Frame = +1
Query: 127 CKLY*TCVSHNTGTCPESSCACPEISCACPETSCACPESSCLC 255
C+L T + H C P +C C P ++C C
Sbjct: 934 CRLIDTGLPHTACQCRFMDTGLPHTACQCRLMDTGLPHTACQC 976
Score = 27.5 bits (58), Expect = 6.6
Identities = 11/43 (25%), Positives = 16/43 (37%)
Frame = +1
Query: 127 CKLY*TCVSHNTGTCPESSCACPEISCACPETSCACPESSCLC 255
C+L T + H C P +C C P ++C C
Sbjct: 976 CRLIDTGLPHTACQCRLMDTGIPHTACQCRLMDTGLPHTACQC 1018
Score = 27.5 bits (58), Expect = 6.6
Identities = 11/43 (25%), Positives = 16/43 (37%)
Frame = +1
Query: 127 CKLY*TCVSHNTGTCPESSCACPEISCACPETSCACPESSCLC 255
C+L T + H C P +C C P ++C C
Sbjct: 1018 CRLIDTGLPHTACQCRLMDTGLPHTACQCRLMDTGLPHTACQC 1060
Score = 27.1 bits (57), Expect = 8.7
Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 7/44 (15%)
Frame = +1
Query: 145 CVSHNTGTCPESSCACPEISCACPETSCAC-------PESSCLC 255
C +TG P ++C C I P T+C C P ++C C
Sbjct: 962 CRLMDTGL-PHTACQCRLIDTGLPHTACQCRLMDTGIPHTACQC 1004
>SB_27977| Best HMM Match : ARID (HMM E-Value=1.6e-26)
Length = 1536
Score = 28.3 bits (60), Expect = 3.8
Identities = 11/34 (32%), Positives = 17/34 (50%)
Frame = +1
Query: 145 CVSHNTGTCPESSCACPEISCACPETSCACPESS 246
C+ N C + + C S CP+ S CP+S+
Sbjct: 998 CLKDNV-MCSKDAVTCQNRSVTCPKYSVLCPDSN 1030
Score = 27.1 bits (57), Expect = 8.7
Identities = 11/37 (29%), Positives = 18/37 (48%)
Frame = +1
Query: 145 CVSHNTGTCPESSCACPEISCACPETSCACPESSCLC 255
C++ N C + + C + + C S CP+ S LC
Sbjct: 991 CLNDNV-MCLKDNVMCSKDAVTCQNRSVTCPKYSVLC 1026
Score = 27.1 bits (57), Expect = 8.7
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +1
Query: 151 SHNTGTCPESSCACPEISCACPETSCACPESS 246
S + TC S CP+ S CP+++ E+S
Sbjct: 1006 SKDAVTCQNRSVTCPKYSVLCPDSNVEPNETS 1037
>SB_42882| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
Length = 1973
Score = 27.9 bits (59), Expect = 5.0
Identities = 9/26 (34%), Positives = 18/26 (69%)
Frame = -2
Query: 224 LVSGQAQLISGQAQLLSGQVPVLWLT 147
++ GQ Q++SG AQ + G ++W++
Sbjct: 1945 IIDGQRQVVSGHAQKIRGAQALVWVS 1970
>SB_7889| Best HMM Match : VWC (HMM E-Value=2.6)
Length = 203
Score = 27.9 bits (59), Expect = 5.0
Identities = 11/29 (37%), Positives = 13/29 (44%)
Frame = +1
Query: 169 CPESSCACPEISCACPETSCACPESSCLC 255
CP+ CPE A PES+C C
Sbjct: 31 CPQMMIKCPENQRVAYHEGPAVPESTCTC 59
>SB_58864| Best HMM Match : VWC (HMM E-Value=0.0031)
Length = 166
Score = 27.5 bits (58), Expect = 6.6
Identities = 12/31 (38%), Positives = 13/31 (41%)
Frame = +1
Query: 148 VSHNTGTCPESSCACPEISCACPETSCACPE 240
V HN C CAC C +C CPE
Sbjct: 72 VKHNDSKCYH--CACDRDVARCDLVNCYCPE 100
>SB_43651| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 274
Score = 27.5 bits (58), Expect = 6.6
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +1
Query: 166 TCPESSCACPEISCACPETSCACPESS 246
T PE + A PE + PE + CPE +
Sbjct: 88 TSPEGNSASPEGNSTSPEGNSTCPEGN 114
>SB_11394| Best HMM Match : GntR (HMM E-Value=7.9)
Length = 451
Score = 27.5 bits (58), Expect = 6.6
Identities = 11/37 (29%), Positives = 16/37 (43%)
Frame = +1
Query: 145 CVSHNTGTCPESSCACPEISCACPETSCACPESSCLC 255
CV++ C C+C C+C C+C C C
Sbjct: 364 CVAYAVVVC----CSCRVACCSCRVVCCSCRVVCCSC 396
Score = 27.1 bits (57), Expect = 8.7
Identities = 8/30 (26%), Positives = 15/30 (50%)
Frame = +1
Query: 166 TCPESSCACPEISCACPETSCACPESSCLC 255
+C + C+C + +C C+C + C C
Sbjct: 145 SCRVACCSCRVVCYSCRVACCSCRVACCSC 174
>SB_44500| Best HMM Match : DUF1693 (HMM E-Value=4)
Length = 553
Score = 27.1 bits (57), Expect = 8.7
Identities = 12/29 (41%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
Frame = +1
Query: 172 PES-SCACPEISCACPETSCACPESSCLC 255
PES +C + C CPE + ESS C
Sbjct: 478 PESQTCGSSRVPCTCPERTTRGTESSHCC 506
>SB_8535| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 236
Score = 27.1 bits (57), Expect = 8.7
Identities = 11/37 (29%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
Frame = +1
Query: 145 CVSHNTGT--CPESSCACPEISCACPETSCACPESSC 249
C S +GT CP ++ + C + +C C +SC
Sbjct: 173 CYSCESGTDVCPLATPCASQFGITCRKLTCFCSRTSC 209
>SB_197| Best HMM Match : LISCH7 (HMM E-Value=1.3)
Length = 120
Score = 27.1 bits (57), Expect = 8.7
Identities = 10/29 (34%), Positives = 12/29 (41%)
Frame = +1
Query: 169 CPESSCACPEISCACPETSCACPESSCLC 255
C + C C C C T C C + C C
Sbjct: 30 CFAARCRCFATRCRCFATRCHCFAARCRC 58
>SB_22833| Best HMM Match : ATP-synt_8 (HMM E-Value=5.9)
Length = 117
Score = 27.1 bits (57), Expect = 8.7
Identities = 11/29 (37%), Positives = 13/29 (44%)
Frame = +1
Query: 169 CPESSCACPEISCACPETSCACPESSCLC 255
CP + ACP CP T CP + C
Sbjct: 4 CPLTLLACPLTLFTCPLTPFTCPLTPFTC 32
>SB_8332| Best HMM Match : PDZ (HMM E-Value=1.3e-17)
Length = 1038
Score = 27.1 bits (57), Expect = 8.7
Identities = 14/38 (36%), Positives = 16/38 (42%)
Frame = +1
Query: 142 TCVSHNTGTCPESSCACPEISCACPETSCACPESSCLC 255
TCV N TC + C C E C E C E +C
Sbjct: 831 TCVP-NICTCVPNICTCTEHMHICTEHMHMCTEHMHMC 867
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,711,550
Number of Sequences: 59808
Number of extensions: 56833
Number of successful extensions: 476
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 231
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 441
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1087245449
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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