Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20534
(686 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC24H6.04 |hxk1||hexokinase 1 |Schizosaccharomyces pombe|chr 1... 73 5e-14
SPAC4F8.07c |hxk2||hexokinase 2 |Schizosaccharomyces pombe|chr 1... 55 1e-08
SPAC19D5.01 |pyp2||tyrosine phosphatase Pyp2|Schizosaccharomyces... 27 3.4
SPAC1142.08 |fhl1|SPAC8C9.01|fork head transcription factor Fhl1... 27 3.4
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb... 27 3.4
SPBC365.09c |||human KIN homolog|Schizosaccharomyces pombe|chr 2... 26 5.9
SPBC530.14c |dsk1||SR protein-specific kinase Dsk1|Schizosacchar... 25 7.8
SPAC6C3.06c |||P-type ATPase, calcium transporting|Schizosacchar... 25 7.8
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces... 25 7.8
SPBC25D12.05 |trm1||N2,N2-dimethylguanosine tRNA methyltransfera... 25 7.8
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha... 25 7.8
>SPAC24H6.04 |hxk1||hexokinase 1 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 484
Score = 72.5 bits (170), Expect = 5e-14
Identities = 36/87 (41%), Positives = 49/87 (56%), Gaps = 1/87 (1%)
Frame = +1
Query: 7 YAIPKHIMTGTGIALFDHIAECLANFMKE-HGVYEERLALGFTFSFPLKQLGLTKGVLQR 183
Y +P+ + GT ALFD+IA+C+ F++E H + L +GFTFS+P Q + L
Sbjct: 116 YRLPQELKVGTREALFDYIADCIKKFVEEVHPGKSQNLEIGFTFSYPCVQRSINDASLVA 175
Query: 184 WTKGFSCSGVVGEDVVQGLKDAIAEEG 264
WTKGF GV GE V L A+ G
Sbjct: 176 WTKGFDIDGVEGESVGPLLSAALKRVG 202
Score = 54.8 bits (126), Expect = 1e-08
Identities = 28/64 (43%), Positives = 42/64 (65%), Gaps = 2/64 (3%)
Frame = +3
Query: 285 AILNDTTGTLMSCAWKNHNCKIGLIVGTGSNACYVEKTANC-ELFDGE-PDKEELLINTE 458
AIL+DTTGTL++ + + +IG+I GTG NACY+EK + +L + P+ ++IN E
Sbjct: 210 AILSDTTGTLVASNYASPGTEIGVIFGTGCNACYIEKFSEIPKLHKYDFPEDMNMIINCE 269
Query: 459 WGAF 470
W F
Sbjct: 270 WCDF 273
Score = 44.8 bits (101), Expect = 1e-05
Identities = 21/48 (43%), Positives = 28/48 (58%)
Frame = +2
Query: 503 RVDREVDVTSINPGKQIQEKMISGMYLGELVRLALVKFTRMGLLFGGQ 646
+ D +D S PG Q EKMI+G YLG+++R L+ G LF GQ
Sbjct: 284 KYDVAIDEESPRPGLQTYEKMIAGCYLGDILRRILLDLYEQGALFNGQ 331
>SPAC4F8.07c |hxk2||hexokinase 2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 455
Score = 54.8 bits (126), Expect = 1e-08
Identities = 32/85 (37%), Positives = 49/85 (57%), Gaps = 2/85 (2%)
Frame = +3
Query: 264 DVQIDICAILNDTTGTLMSCAW--KNHNCKIGLIVGTGSNACYVEKTANCELFDGEPDKE 437
++ I I A++NDT GTL++ A+ K + +G+I GTG+N YVE+ G+ +
Sbjct: 186 NLPIRIEAVINDTVGTLVTRAYTSKESDTFMGIIFGTGTNGAYVEQMNQIPKLAGKCTGD 245
Query: 438 ELLINTEWGAFGDDGSLDFVRTELI 512
+LIN EWGA D L R +L+
Sbjct: 246 HMLINMEWGA-TDFSCLHSTRYDLL 269
Score = 49.6 bits (113), Expect = 4e-07
Identities = 26/72 (36%), Positives = 41/72 (56%), Gaps = 6/72 (8%)
Frame = +1
Query: 49 LFDHIAECLANFMKEH-----GVYEER-LALGFTFSFPLKQLGLTKGVLQRWTKGFSCSG 210
+ D +++ + F+KEH G EE L +GFTFS+P Q+ +T+ L RWTKG +
Sbjct: 109 IIDFMSDHVELFIKEHFPSKFGCPEEEYLPMGFTFSYPANQVSITESYLLRWTKGLNIPE 168
Query: 211 VVGEDVVQGLKD 246
+ +D Q L +
Sbjct: 169 AINKDFAQFLTE 180
Score = 39.5 bits (88), Expect = 4e-04
Identities = 20/39 (51%), Positives = 25/39 (64%)
Frame = +2
Query: 491 LRADRVDREVDVTSINPGKQIQEKMISGMYLGELVRLAL 607
L + R D +D + N G+QI EK + GMYLGEL R AL
Sbjct: 261 LHSTRYDLLLDHDTPNAGRQIFEKRVGGMYLGELFRRAL 299
>SPAC19D5.01 |pyp2||tyrosine phosphatase Pyp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 711
Score = 26.6 bits (56), Expect = 3.4
Identities = 14/46 (30%), Positives = 24/46 (52%)
Frame = -1
Query: 290 NSAYVNLYIPSSAIASLRPCTTSSPTTPEQEKPLVHLCNTPFVRPS 153
NSA+ +P I+ C +S P+TP+++K + N P P+
Sbjct: 237 NSAF-QAEMPYFPISPAISCASSCPSTPDEQKNFFIVGNAPQQTPA 281
>SPAC1142.08 |fhl1|SPAC8C9.01|fork head transcription factor Fhl1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 743
Score = 26.6 bits (56), Expect = 3.4
Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Frame = -1
Query: 293 QNSAYVNLYIPSSAIASLRPCTTS-SPTTPEQEKPLVHLCNTPFVRPS 153
+ AY + + + A P TS SP+ ++P V++ P+VRPS
Sbjct: 542 RRKAYTSQQLNPAPTAMPHPNITSPSPSISVTQRPAVNVGPPPYVRPS 589
>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 2386
Score = 26.6 bits (56), Expect = 3.4
Identities = 14/60 (23%), Positives = 28/60 (46%)
Frame = +2
Query: 227 LYRALKMLSQKRGCTD*HMRYSE*YNGYIDVLRMEKPQLQNRTHRWYWQQRLLRRENSEL 406
+Y + +S+K G ++ +N + + ++KP +W+W Q R+ SEL
Sbjct: 1661 IYLEIARISRKNG------QFQRAFNAILKAMDLDKPLATIEHAQWWWHQGQHRKAISEL 1714
>SPBC365.09c |||human KIN homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 304
Score = 25.8 bits (54), Expect = 5.9
Identities = 11/30 (36%), Positives = 21/30 (70%)
Frame = +2
Query: 512 REVDVTSINPGKQIQEKMISGMYLGELVRL 601
R+++V ++NPGK+IQ+ S +L + + L
Sbjct: 52 RQMNVIAMNPGKRIQD--FSNQFLRDFISL 79
>SPBC530.14c |dsk1||SR protein-specific kinase
Dsk1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 544
Score = 25.4 bits (53), Expect = 7.8
Identities = 14/56 (25%), Positives = 25/56 (44%)
Frame = +3
Query: 345 KIGLIVGTGSNACYVEKTANCELFDGEPDKEELLINTEWGAFGDDGSLDFVRTELI 512
KI + + NAC+ K ++ + E+++ WGA D S + EL+
Sbjct: 353 KITVKIADLGNACWTRKHFTNDVQTRQYRSPEVILGCRWGASADCWSFACIIFELL 408
>SPAC6C3.06c |||P-type ATPase, calcium
transporting|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1033
Score = 25.4 bits (53), Expect = 7.8
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = +2
Query: 188 LKVSLVPVWSAKMLYRALK 244
L +SL+PVW K L R LK
Sbjct: 1006 LFISLLPVWCGKALKRKLK 1024
>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3131
Score = 25.4 bits (53), Expect = 7.8
Identities = 15/33 (45%), Positives = 21/33 (63%)
Frame = +2
Query: 161 LQKAYYKDGLKVSLVPVWSAKMLYRALKMLSQK 259
L KAY K L V+ ++AK+ ALK+LS+K
Sbjct: 3021 LLKAYEKMALMVAEQEEFNAKIEDMALKLLSEK 3053
>SPBC25D12.05 |trm1||N2,N2-dimethylguanosine tRNA
methyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 548
Score = 25.4 bits (53), Expect = 7.8
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Frame = +3
Query: 324 AW-KNHNCKIGLIVGTGSNACYVEKTANCEL-FDGEPDKE 437
+W K+H K+ I T + A +EKT E+ F PD E
Sbjct: 472 SWIKDHPVKLENISKTSAGAAILEKTPTAEVDFTFRPDSE 511
>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 4196
Score = 25.4 bits (53), Expect = 7.8
Identities = 16/59 (27%), Positives = 25/59 (42%)
Frame = -1
Query: 380 SVAASTNDESYFAVVVFPCAGHQCTRCIIQNSAYVNLYIPSSAIASLRPCTTSSPTTPE 204
S++ S N + + R I + Y +Y+ S PC TSSPT+P+
Sbjct: 27 SLSVSDNLDDICETIALQSTFVDTFRSFINDEYYTVIYLYGS------PCLTSSPTSPD 79
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,977,886
Number of Sequences: 5004
Number of extensions: 62965
Number of successful extensions: 186
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 184
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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