Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20534
         (686 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_38340| Best HMM Match : Hexokinase_1 (HMM E-Value=0)               100   1e-21
SB_10891| Best HMM Match : No HMM Matches (HMM E-Value=.)              61   9e-10
SB_6686| Best HMM Match : Kazal_1 (HMM E-Value=0)                      34   0.094
SB_39805| Best HMM Match : Pec_lyase_N (HMM E-Value=3.5)               31   1.2  
SB_21445| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.5  
SB_49535| Best HMM Match : RVT_1 (HMM E-Value=5.1e-32)                 30   2.0  
SB_4647| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.5  
SB_37596| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.2  
SB_32060| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.2  
SB_28852| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.2  
SB_10958| Best HMM Match : DUF733 (HMM E-Value=9.1)                    28   6.2  
SB_10382| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.2  
SB_29619| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.2  
SB_11563| Best HMM Match : SNF7 (HMM E-Value=0.28)                     28   6.2  
SB_56852| Best HMM Match : CemA (HMM E-Value=1.5)                      28   8.1  

>SB_38340| Best HMM Match : Hexokinase_1 (HMM E-Value=0)
          Length = 418

 Score =  100 bits (240), Expect = 1e-21
 Identities = 45/84 (53%), Positives = 63/84 (75%)
 Frame = +1

Query: 1   KIYAIPKHIMTGTGIALFDHIAECLANFMKEHGVYEERLALGFTFSFPLKQLGLTKGVLQ 180
           +I+ + + +MT   I LFD+IA+C+  F+K+  + ++ L LGFTFSFP++QL LT G+L 
Sbjct: 89  EIFPLDQTLMTSDSITLFDYIADCITLFVKKKSLQDKTLPLGFTFSFPVQQLSLTSGLLI 148

Query: 181 RWTKGFSCSGVVGEDVVQGLKDAI 252
           RWTKGFS  GV GEDVV+ LKDA+
Sbjct: 149 RWTKGFSAGGVEGEDVVRLLKDAL 172



 Score = 90.2 bits (214), Expect = 1e-18
 Identities = 39/79 (49%), Positives = 58/79 (73%), Gaps = 1/79 (1%)
 Frame = +3

Query: 273 IDICAILNDTTGTLMSCAWKNHNCKIGLIVGTGSNACYVEKTANCELFDGEPD-KEELLI 449
           +D+ A++NDTTGT+M+C + + N   GLI+GTG+NACY+E   N + ++ E     E++I
Sbjct: 180 VDVVALVNDTTGTMMACGFDDRNVIAGLILGTGTNACYMESLDNVKKWNEERGCSNEVII 239

Query: 450 NTEWGAFGDDGSLDFVRTE 506
           NTEWGAFGD G L+++ TE
Sbjct: 240 NTEWGAFGDSGVLNWIITE 258



 Score = 64.5 bits (150), Expect = 8e-11
 Identities = 32/59 (54%), Positives = 39/59 (66%)
 Frame = +2

Query: 509 DREVDVTSINPGKQIQEKMISGMYLGELVRLALVKFTRMGLLFGGQGSDLLFEGGSFYT 685
           D+++DV SINPG+Q+ EKMISGMYLGEL R   +     GLL  G  S+ L   GSF T
Sbjct: 260 DKKIDVESINPGQQVFEKMISGMYLGELARHICMDLIHRGLLLNGIASNKLKTKGSFLT 318


>SB_10891| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 929

 Score = 60.9 bits (141), Expect = 9e-10
 Identities = 24/51 (47%), Positives = 38/51 (74%)
 Frame = +3

Query: 273 IDICAILNDTTGTLMSCAWKNHNCKIGLIVGTGSNACYVEKTANCELFDGE 425
           +D+ A++NDTTGT+M+C + + N   GLI+GTG+NACY+E   N + ++ E
Sbjct: 92  VDVVALVNDTTGTMMACGFDDRNVIAGLILGTGTNACYMESLDNVKKWNEE 142


>SB_6686| Best HMM Match : Kazal_1 (HMM E-Value=0)
          Length = 2411

 Score = 34.3 bits (75), Expect = 0.094
 Identities = 23/72 (31%), Positives = 31/72 (43%), Gaps = 5/72 (6%)
 Frame = -1

Query: 401  RCFLDVTSVAASTN-DESYFAVVVFPCAGHQC---TRCIIQNSAYVNLYIPSSAIASLRP 234
            RCFL+VTS A           + V PC   QC   +RC++ +S         S   S  P
Sbjct: 1312 RCFLEVTSCALKIKITLKNNGLCVHPCNRTQCPSYSRCVLDSSLQAKCVCTKSCPLSYEP 1371

Query: 233  -CTTSSPTTPEQ 201
             C ++  T P Q
Sbjct: 1372 LCASNGKTFPNQ 1383


>SB_39805| Best HMM Match : Pec_lyase_N (HMM E-Value=3.5)
          Length = 611

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 23/86 (26%), Positives = 33/86 (38%)
 Frame = -1

Query: 449 NEQFLFVRFAIEQLTIRCFLDVTSVAASTNDESYFAVVVFPCAGHQCTRCIIQNSAYVNL 270
           N   L +RF    L  R +    + A S  +E     V   C    C  CI  +   + +
Sbjct: 58  NRSRLSLRFGYSSL--RNWRPSLAAAPSVMNEVSALAVPAVCEAVLCAACIRDDVLVIGI 115

Query: 269 YIPSSAIASLRPCTTSSPTTPEQEKP 192
             PSS    +R   +SSPT    + P
Sbjct: 116 DSPSSGSNGIRGVVSSSPTPRSADSP 141


>SB_21445| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 122

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 14/51 (27%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
 Frame = -1

Query: 416 EQLTIRCFLDVTSVAASTNDESYFAVVVFP-CAGHQCTRCIIQNSAYVNLY 267
           E L  RC  + T V    + +  F+    P C+G +C +C+  + A + +Y
Sbjct: 68  EILRARCLNEGTCVEHCDSPKKKFSCKCRPPCSGKECEKCVYSSCAQITIY 118


>SB_49535| Best HMM Match : RVT_1 (HMM E-Value=5.1e-32)
          Length = 991

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 15/58 (25%), Positives = 26/58 (44%)
 Frame = +3

Query: 15  TKTYNDWHRHCSI*PHSRMFSKFYEGARSL*RKIGTWIYIQFSTKTTGSYKRRITKMD 188
           TK   D+  HC   P  + ++   E  R L +K   W++ Q   +   + K ++T  D
Sbjct: 523 TKAIQDFPDHCDRAPTFQWYATINEPLRQLLKKEQQWLWYQPQERAFQAIKTKLTSTD 580


>SB_4647| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2735

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 16/62 (25%), Positives = 30/62 (48%)
 Frame = -1

Query: 290  NSAYVNLYIPSSAIASLRPCTTSSPTTPEQEKPLVHLCNTPFVRPSCFSGKLNVNPSANL 111
            ++A +N+   S     +RPC+  SP++P   + ++ L  T  + P C  G +    S  +
Sbjct: 1569 DNALLNMSYMSPIAVDVRPCSPPSPSSPTPYEDVLPLSET--LSPPCPVGNIREGISKTI 1626

Query: 110  SS 105
             S
Sbjct: 1627 MS 1628


>SB_37596| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 408

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 19/59 (32%), Positives = 25/59 (42%), Gaps = 2/59 (3%)
 Frame = -1

Query: 491 VEAAVIPKRPP-LGINEQFLFVRFAIEQLTIRCFLDVTSVAASTNDESY-FAVVVFPCA 321
           V AA    RPP L    Q+  +   +       FLD     AS  D+ Y + + VFP A
Sbjct: 264 VSAACTRTRPPPLSAKTQWRPLHIMVGMTATMLFLDFAEECASYGDDEYEWVIYVFPLA 322


>SB_32060| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1162

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = -2

Query: 664  EQKIRTLTPEQQAHSSEFDER-QPHQFTQVHARNHLLLNLFARVYG 530
            EQ+I  +  E+     EFDE    H+   +  RNH+L +   +VYG
Sbjct: 896  EQRIGAIVTEEM--KQEFDEFWSKHKDKPLSGRNHILASFCPQVYG 939


>SB_28852| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3172

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
 Frame = -1

Query: 263  PSSAIASLRPCTTSSPTTPEQEKPLV-HLCNTPFVRP 156
            P  A+    PC    P+TP ++ PLV    +TPF  P
Sbjct: 3098 PYKAVPPSTPCQNPPPSTPYKKAPLVTPYKHTPFKTP 3134


>SB_10958| Best HMM Match : DUF733 (HMM E-Value=9.1)
          Length = 268

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 17/57 (29%), Positives = 24/57 (42%)
 Frame = -1

Query: 362 NDESYFAVVVFPCAGHQCTRCIIQNSAYVNLYIPSSAIASLRPCTTSSPTTPEQEKP 192
           N+ S  AV    C    C  CI  +   + +  PSS    +R   +SSPT    + P
Sbjct: 2   NEVSALAVHAV-CEAVLCAACIRDDVLVIGIDSPSSGSNGIRGVVSSSPTPRSADSP 57


>SB_10382| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 97

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 15/38 (39%), Positives = 19/38 (50%)
 Frame = +1

Query: 136 SFPLKQLGLTKGVLQRWTKGFSCSGVVGEDVVQGLKDA 249
           S P KQ G+ + V  +  +GF C    GED    L DA
Sbjct: 45  SNPAKQSGINEQVKLKVLEGFDCLEASGEDSEHQLTDA 82


>SB_29619| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 745

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +1

Query: 79  NFMKEHGVYEERLALGFTFSFPLKQLGLTKG 171
           ++++ H +YE  L  GF   FPL  L L+ G
Sbjct: 444 DYLQVHDMYESALETGFNVGFPLMGLLLSGG 474


>SB_11563| Best HMM Match : SNF7 (HMM E-Value=0.28)
          Length = 859

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -1

Query: 323 AGHQCTRCIIQNSAYVNLYIPSSAIASLRPC 231
           +G QC R + Q   + N  +PS  I +LR C
Sbjct: 509 SGEQCIRTLSQLPEFTNGKLPSELIRALRTC 539


>SB_56852| Best HMM Match : CemA (HMM E-Value=1.5)
          Length = 545

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
 Frame = -1

Query: 395 FLDVTSVAASTNDESYFAVVVFPCAGH-QCTRCIIQNSAYVN 273
           FL   SVAAS  D  +  VV+  C+G   C  C    + +V+
Sbjct: 153 FLTYRSVAASGKDHGHVRVVIVSCSGRGSCHVCGRSRAMFVS 194


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,677,751
Number of Sequences: 59808
Number of extensions: 494775
Number of successful extensions: 1400
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1242
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1396
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1781448916
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)