Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20534
         (686 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    23   3.6  
AF393494-1|AAL60419.1|  144|Apis mellifera odorant binding prote...    22   4.8  
AF166496-1|AAD51944.1|  144|Apis mellifera pheromone-binding pro...    22   4.8  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    22   6.3  

>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 5/17 (29%), Positives = 11/17 (64%)
 Frame = +2

Query: 332 KPQLQNRTHRWYWQQRL 382
           +P  QN  ++W+W  ++
Sbjct: 356 QPVCQNEMNKWWWNMKI 372


>AF393494-1|AAL60419.1|  144|Apis mellifera odorant binding protein
           ASP1 protein.
          Length = 144

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +1

Query: 49  LFDHIAECLANFMKEHGVYEERL 117
           +FD +AE  A  M EHG  + ++
Sbjct: 34  VFDLVAEDKARCMSEHGTTQAQI 56


>AF166496-1|AAD51944.1|  144|Apis mellifera pheromone-binding
           protein ASP1 protein.
          Length = 144

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +1

Query: 49  LFDHIAECLANFMKEHGVYEERL 117
           +FD +AE  A  M EHG  + ++
Sbjct: 34  VFDLVAEDKARCMSEHGTTQAQI 56


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -1

Query: 236 PCTTSSPTTPEQEKPLVHLCNT 171
           P TT++P     E+ +  LCNT
Sbjct: 448 PATTAAPPQLPTEESVDALCNT 469


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 199,200
Number of Sequences: 438
Number of extensions: 4197
Number of successful extensions: 13
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20952180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)