Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20533
         (683 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_43607| Best HMM Match : INSIG (HMM E-Value=9.3e-09)                 28   6.1  
SB_53171| Best HMM Match : SpdB (HMM E-Value=7.6)                      28   8.1  
SB_59039| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.1  

>SB_43607| Best HMM Match : INSIG (HMM E-Value=9.3e-09)
          Length = 544

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 13/40 (32%), Positives = 24/40 (60%)
 Frame = -1

Query: 275 TIFYNSSEINNIREGGRSQNLILFIRGNAISGAPSIRGTN 156
           T     +EI N+ + G   ++   ++G+ I+ AP+IRGT+
Sbjct: 417 TALSQETEIVNVTDDGGVDHVAGRVKGHVIAIAPAIRGTD 456


>SB_53171| Best HMM Match : SpdB (HMM E-Value=7.6)
          Length = 414

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = -1

Query: 233 GGRSQNLILFIRGNAISGAPSI 168
           GG S+NLI F  G  I G PS+
Sbjct: 99  GGESKNLINFALGQDIGGVPSV 120


>SB_59039| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 48

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +1

Query: 451 NYPYLYEL*GLQHFYYYYHSCFSWSYY 531
           NY Y Y      ++YYYY+  + + YY
Sbjct: 15  NYAYYYYYYYYYYYYYYYYYYYYYYYY 41


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,310,980
Number of Sequences: 59808
Number of extensions: 250857
Number of successful extensions: 617
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 438
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 540
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1769412099
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)