Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20533
         (683 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL032634-1|CAC35856.2| 1195|Caenorhabditis elegans Hypothetical ...    30   1.8  
AF039044-4|AAG24122.3|  328|Caenorhabditis elegans Serpentine re...    29   2.3  
U64841-1|AAB04845.2|  357|Caenorhabditis elegans Serpentine rece...    29   4.1  
Z54218-4|CAA90958.1| 1367|Caenorhabditis elegans Hypothetical pr...    28   7.1  
Z49910-9|CAA90125.1| 1367|Caenorhabditis elegans Hypothetical pr...    28   7.1  
Z78018-1|CAB01445.1|  126|Caenorhabditis elegans Hypothetical pr...    27   9.4  

>AL032634-1|CAC35856.2| 1195|Caenorhabditis elegans Hypothetical
           protein Y39G8C.1 protein.
          Length = 1195

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = +1

Query: 487 HFYYYYHSCFSWSYY 531
           + +YYYH C SWS++
Sbjct: 528 NLHYYYHGCVSWSWF 542


>AF039044-4|AAG24122.3|  328|Caenorhabditis elegans Serpentine
           receptor, class t protein17 protein.
          Length = 328

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 15/46 (32%), Positives = 25/46 (54%)
 Frame = +2

Query: 545 DRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIISHI 682
           + N ++ F DP  G DP LY++    F +  V I  +  +G IS++
Sbjct: 187 NENYSSWFTDPGLGHDPALYKNSLIAFNNFAVAICTIVFYGYISYV 232


>U64841-1|AAB04845.2|  357|Caenorhabditis elegans Serpentine
           receptor, class t protein13 protein.
          Length = 357

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 18/43 (41%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = +2

Query: 488 IFIIIITPVLAGAITILLTDRNLNTS-FFDPAGGGDPILYQHL 613
           +FIIII  + A   T  L  R   +S FFDP  G DP  Y ++
Sbjct: 156 MFIIIIFWIFASFFTKPLLYRAQYSSWFFDPNVGNDPSFYHNI 198


>Z54218-4|CAA90958.1| 1367|Caenorhabditis elegans Hypothetical
           protein F44G4.8 protein.
          Length = 1367

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 12/32 (37%), Positives = 21/32 (65%)
 Frame = -1

Query: 641 KLQDVQKIKINVDIKLGLLLQQDQKMMYLSFD 546
           KLQD+QK+K +VD+ +   L +D+  + +  D
Sbjct: 822 KLQDIQKVKQDVDVSIFEELGEDETCLEVRAD 853


>Z49910-9|CAA90125.1| 1367|Caenorhabditis elegans Hypothetical
           protein F44G4.8 protein.
          Length = 1367

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 12/32 (37%), Positives = 21/32 (65%)
 Frame = -1

Query: 641 KLQDVQKIKINVDIKLGLLLQQDQKMMYLSFD 546
           KLQD+QK+K +VD+ +   L +D+  + +  D
Sbjct: 822 KLQDIQKVKQDVDVSIFEELGEDETCLEVRAD 853


>Z78018-1|CAB01445.1|  126|Caenorhabditis elegans Hypothetical
           protein W07G4.1 protein.
          Length = 126

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = +2

Query: 482 YSIFIIIITPVLAGAITILLTDRNLNTSFFD 574
           Y +  +++ P     IT+++ DR+L T+F D
Sbjct: 64  YPLTRVLLLPNQMNIITVVIADRSLTTNFMD 94


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,892,744
Number of Sequences: 27780
Number of extensions: 214474
Number of successful extensions: 447
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 426
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 447
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1560745544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)