Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20532
         (405 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP4H10.05c |spe2||S-adenosylmethionine decarboxylase proenzyme...    80   1e-16
SPBC31E1.02c |pmr1||P-type ATPase, calcium transporting Pmr1 |Sc...    26   1.9  
SPCC24B10.19c |||sequence orphan|Schizosaccharomyces pombe|chr 3...    25   4.5  
SPAC3G6.09c |tps2||trehalose-phosphate synthase Tps2 |Schizosacc...    24   7.8  
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein...    24   7.8  

>SPBP4H10.05c |spe2||S-adenosylmethionine decarboxylase proenzyme
           Spe2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 378

 Score = 79.8 bits (188), Expect = 1e-16
 Identities = 40/84 (47%), Positives = 55/84 (65%)
 Frame = +3

Query: 3   EIISFTQSEQVDAYVLSESSMFVSRRRWILKTCGTTTPLRCVRAVLALAQDVAGHSCVHN 182
           +++S   SE++DAY+LSESSMFV   + ILKTCGTTT L  +  +L +A  V G      
Sbjct: 67  KVLSVVNSEEIDAYLLSESSMFVFAHKIILKTCGTTTLLASLPRLLEIASSV-GFDRPLR 125

Query: 183 VFYSRREFARPEVQLKPHDNFDSE 254
           +FYSR+ F  PE QL PH +++ E
Sbjct: 126 IFYSRKNFLYPERQLAPHTSWEEE 149


>SPBC31E1.02c |pmr1||P-type ATPase, calcium transporting Pmr1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 899

 Score = 26.2 bits (55), Expect = 1.9
 Identities = 14/43 (32%), Positives = 24/43 (55%)
 Frame = +1

Query: 196 GENSPVPKSSSNRTTTLIQSKTSGFIFRGWARLYHGPGKRLLV 324
           GENSP  KSS   ++ +  ++ +   F G   + HG G+ ++V
Sbjct: 171 GENSPRKKSSEAISSNISLTERNNIAFMG-TLVRHGHGRGIVV 212


>SPCC24B10.19c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 455

 Score = 25.0 bits (52), Expect = 4.5
 Identities = 9/25 (36%), Positives = 19/25 (76%)
 Frame = +1

Query: 178 TTCSTPGENSPVPKSSSNRTTTLIQ 252
           T+ +T  ++SPVP+S++  TT +++
Sbjct: 282 TSTTTSTKSSPVPESTTTNTTEVLK 306


>SPAC3G6.09c |tps2||trehalose-phosphate synthase Tps2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 849

 Score = 24.2 bits (50), Expect = 7.8
 Identities = 14/47 (29%), Positives = 22/47 (46%)
 Frame = +3

Query: 27  EQVDAYVLSESSMFVSRRRWILKTCGTTTPLRCVRAVLALAQDVAGH 167
           +Q+ +   S+  + V R + + K CG T  LR  R +L       GH
Sbjct: 341 QQLKSLYPSDKKLIVGRDQ-LTKACGVTHKLRAFRELLIHFPKWRGH 386


>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 670

 Score = 24.2 bits (50), Expect = 7.8
 Identities = 13/26 (50%), Positives = 14/26 (53%)
 Frame = +1

Query: 187 STPGENSPVPKSSSNRTTTLIQSKTS 264
           S P   S    SSS+ TTTL  S TS
Sbjct: 304 SVPSSVSSFTSSSSSYTTTLTASNTS 329


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,674,141
Number of Sequences: 5004
Number of extensions: 34531
Number of successful extensions: 102
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 138190552
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)