Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20532
(405 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0580 + 24065830-24065967,24066163-24067425 66 1e-11
05_01_0301 - 2356880-2357959 63 9e-11
09_04_0172 - 15331370-15332548 60 7e-10
04_04_0392 + 24891478-24891612,24891875-24893092 58 3e-09
06_03_1509 - 30663302-30663416,30663516-30663889 30 0.80
01_05_0124 - 18380313-18380518,18380532-18380895 29 1.1
07_03_1142 + 24287674-24288357,24291451-24292137 29 1.8
05_04_0238 - 19311916-19312299,19312606-19312662 29 1.8
12_01_0818 + 7524549-7524747,7524855-7525863,7525964-7526108,752... 28 2.4
06_01_0062 - 529833-530917,531392-531434 28 3.2
02_05_0105 + 25874155-25874495,25874586-25874615,25875327-258754... 28 3.2
12_01_0825 - 7611594-7611728,7612061-7612276,7612505-7612589,761... 27 4.3
12_02_0298 + 17041206-17041712 27 5.6
03_03_0090 + 14367033-14367279,14367402-14368205,14368314-143700... 27 5.6
02_01_0171 - 1179095-1179388,1179668-1179801,1180036-1180900,118... 27 5.6
01_06_0809 - 32137202-32138128,32138247-32138631,32139503-321396... 27 5.6
10_08_0732 - 20173816-20174137,20175824-20176023,20176099-20176998 27 7.5
04_04_1255 + 32119565-32119685,32120052-32120218,32120332-321205... 27 7.5
04_04_0424 + 25117260-25117332,25117466-25117719,25117849-251179... 27 7.5
01_06_0372 + 28828552-28829913 27 7.5
06_01_0228 - 1736373-1736721,1739915-1740120,1740513-1740844,174... 26 9.9
04_01_0046 + 510721-510790,511048-511121,511459-511729,511865-51... 26 9.9
03_01_0191 + 1531107-1531948,1532101-1532233,1532366-1532450,153... 26 9.9
>02_04_0580 + 24065830-24065967,24066163-24067425
Length = 466
Score = 66.1 bits (154), Expect = 1e-11
Identities = 36/83 (43%), Positives = 50/83 (60%)
Frame = +3
Query: 6 IISFTQSEQVDAYVLSESSMFVSRRRWILKTCGTTTPLRCVRAVLALAQDVAGHSCVHNV 185
I+S +E D+YVLSESS+FV + ++KTCGTT L + +L LA++++ + V
Sbjct: 132 IVSELSNEVFDSYVLSESSLFVYPYKIVIKTCGTTKLLLAIPRILELAEELS--LPLEAV 189
Query: 186 FYSRREFARPEVQLKPHDNFDSE 254
YSR F PE Q PH NF E
Sbjct: 190 KYSRGTFIFPEAQPSPHKNFSEE 212
>05_01_0301 - 2356880-2357959
Length = 359
Score = 62.9 bits (146), Expect = 9e-11
Identities = 38/83 (45%), Positives = 47/83 (56%)
Frame = +3
Query: 6 IISFTQSEQVDAYVLSESSMFVSRRRWILKTCGTTTPLRCVRAVLALAQDVAGHSCVHNV 185
++S + DAYVLSESSMFV R +LKTCGTT LR V +L A A + +
Sbjct: 50 VVSAAGNAAADAYVLSESSMFVYPGRVVLKTCGTTPLLRAVPVLLRAA--AALRLRLRSC 107
Query: 186 FYSRREFARPEVQLKPHDNFDSE 254
YSR E+ PE Q PH +F E
Sbjct: 108 RYSRGEYLFPEAQPFPHAHFADE 130
>09_04_0172 - 15331370-15332548
Length = 392
Score = 60.1 bits (139), Expect = 7e-10
Identities = 35/83 (42%), Positives = 49/83 (59%)
Frame = +3
Query: 6 IISFTQSEQVDAYVLSESSMFVSRRRWILKTCGTTTPLRCVRAVLALAQDVAGHSCVHNV 185
I+S ++ D+YVLSESS+FV + +LKTCGTT L + +L LA +++ V +V
Sbjct: 63 IVSHLSNKHFDSYVLSESSLFVYPHKVVLKTCGTTKLLLSIPRILELAAELS--LPVLSV 120
Query: 186 FYSRREFARPEVQLKPHDNFDSE 254
YSR F P Q PH +F E
Sbjct: 121 KYSRGMFIFPGAQPSPHRSFLEE 143
>04_04_0392 + 24891478-24891612,24891875-24893092
Length = 450
Score = 58.0 bits (134), Expect = 3e-09
Identities = 32/83 (38%), Positives = 48/83 (57%)
Frame = +3
Query: 6 IISFTQSEQVDAYVLSESSMFVSRRRWILKTCGTTTPLRCVRAVLALAQDVAGHSCVHNV 185
I+S ++ D+YVLSESS+F+ + ++KTCGTT L + +L LA+ ++ + V
Sbjct: 113 IVSELSNKDFDSYVLSESSLFIYSDKIVIKTCGTTKLLLTIPRILELAEGLS--MPLAAV 170
Query: 186 FYSRREFARPEVQLKPHDNFDSE 254
YSR F P Q PH +F E
Sbjct: 171 KYSRGMFIFPSAQPAPHRSFSEE 193
>06_03_1509 - 30663302-30663416,30663516-30663889
Length = 162
Score = 29.9 bits (64), Expect = 0.80
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = +1
Query: 139 WLSHRTWRAIRACTTCSTPGENSPVPKSSSNRTTTL 246
W + R+CTTC G + +PK+SS TTTL
Sbjct: 130 WTYCNRCSSTRSCTTC---GGSGAIPKASSPTTTTL 162
>01_05_0124 - 18380313-18380518,18380532-18380895
Length = 189
Score = 29.5 bits (63), Expect = 1.1
Identities = 21/60 (35%), Positives = 24/60 (40%), Gaps = 5/60 (8%)
Frame = -1
Query: 225 AGLRDGRILSWSRTRCARTNGPPRPV----REPAQRGRTVAGWW-SRMSSVSSVFVKRTC 61
AG R LSW R+ N P R P RGR VA W +R + SV C
Sbjct: 71 AGSRSAASLSWRRSGSNMENAGYSPASRMARSPGHRGRAVARWRPARNQAAGSVGAPLQC 130
>07_03_1142 + 24287674-24288357,24291451-24292137
Length = 456
Score = 28.7 bits (61), Expect = 1.8
Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Frame = -1
Query: 192 SRTRCARTN--GPPRPVREPAQRGRTVAGWWSRMSSVSSVFVKRT 64
SR R R N GPP P + + + W ++ S +V VKRT
Sbjct: 220 SRPRRPRPNIPGPPPPKGSLVEHDKALGLWTIKLPSADTVVVKRT 264
>05_04_0238 - 19311916-19312299,19312606-19312662
Length = 146
Score = 28.7 bits (61), Expect = 1.8
Identities = 17/57 (29%), Positives = 21/57 (36%)
Frame = +1
Query: 106 PPPRYGASALCWLSHRTWRAIRACTTCSTPGENSPVPKSSSNRTTTLIQSKTSGFIF 276
P PR H W + SP+ +SS R TT S TSG +F
Sbjct: 62 PGPRPAMQRFSHCFHFKWSSYDYFLVLDQRCSVSPIVSTSSGRVTTTSWSSTSGVVF 118
>12_01_0818 +
7524549-7524747,7524855-7525863,7525964-7526108,
7526206-7526295,7526404-7526553,7527333-7528094,
7528177-7528496,7528581-7528707,7528792-7528959,
7529054-7530466,7530563-7530823,7530983-7531144,
7531976-7532121,7532601-7532667,7533483-7533587
Length = 1707
Score = 28.3 bits (60), Expect = 2.4
Identities = 19/60 (31%), Positives = 25/60 (41%), Gaps = 2/60 (3%)
Frame = -1
Query: 225 AGLRDGRILSWSRTRCARTNGPP--RPVREPAQRGRTVAGWWSRMSSVSSVFVKRTCCSH 52
+G GRI W TRC R NG P R + + R + + S S K + C H
Sbjct: 824 SGKDQGRIWMW--TRCLRCNGKPTQRVIISSSARNLSFGKFLELSFSTHSAAKKLSTCGH 881
>06_01_0062 - 529833-530917,531392-531434
Length = 375
Score = 27.9 bits (59), Expect = 3.2
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = -1
Query: 186 TRCARTNGPPRPVREPAQRGR 124
TRC+ PPRPVR P R R
Sbjct: 18 TRCSPAAAPPRPVRIPRVRVR 38
>02_05_0105 +
25874155-25874495,25874586-25874615,25875327-25875433,
25875884-25875918,25876310-25876438,25877103-25877294
Length = 277
Score = 27.9 bits (59), Expect = 3.2
Identities = 14/30 (46%), Positives = 16/30 (53%)
Frame = -1
Query: 243 SCRAV*AGLRDGRILSWSRTRCARTNGPPR 154
SC+A G RDG LS S A + PPR
Sbjct: 37 SCQANRGGSRDGNSLSTSAAAAAAASPPPR 66
>12_01_0825 -
7611594-7611728,7612061-7612276,7612505-7612589,
7613170-7613372,7613935-7615723,7616322-7616450,
7616825-7616928,7618725-7618779,7618860-7618975
Length = 943
Score = 27.5 bits (58), Expect = 4.3
Identities = 15/37 (40%), Positives = 25/37 (67%), Gaps = 1/37 (2%)
Frame = -3
Query: 322 PTVFFRAH-DIGAPIPEK*IQKFYSESKLSCGLSWTS 215
P++ + H D+ +PIP+K I+K S ++ CG+S TS
Sbjct: 604 PSILKKRHRDLVSPIPDKRIEK-KSGTEKDCGVSDTS 639
>12_02_0298 + 17041206-17041712
Length = 168
Score = 27.1 bits (57), Expect = 5.6
Identities = 12/40 (30%), Positives = 18/40 (45%)
Frame = +1
Query: 109 PPRYGASALCWLSHRTWRAIRACTTCSTPGENSPVPKSSS 228
P + A + HR W + + C+T SP P+S S
Sbjct: 26 PVEWDRGARGVVGHRRWSSWPSAKNCATTAAPSPAPRSLS 65
>03_03_0090 +
14367033-14367279,14367402-14368205,14368314-14370039,
14370135-14370219,14370398-14370457,14370744-14370836
Length = 1004
Score = 27.1 bits (57), Expect = 5.6
Identities = 17/37 (45%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Frame = +1
Query: 172 ACTTCSTPGENSPVPKSSSNR--TTTLIQSKTSGFIF 276
A CSTP +N P SS N+ T T +Q S FIF
Sbjct: 586 AKANCSTPLKNPPFSLSSVNKPVTPTDLQHLGSEFIF 622
>02_01_0171 -
1179095-1179388,1179668-1179801,1180036-1180900,
1180998-1181258,1181424-1181621,1181752-1181982,
1185337-1185648,1185750-1186247
Length = 930
Score = 27.1 bits (57), Expect = 5.6
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = +1
Query: 163 AIRACTTCSTPGENSPVPKSSSNRTTTLIQSKTS 264
A+ A TCS +NSP +TTT ++ S
Sbjct: 7 AVHAIITCSASNKNSPPSARQQQQTTTTTATRGS 40
>01_06_0809 -
32137202-32138128,32138247-32138631,32139503-32139607,
32139737-32139770,32139856-32140098,32140187-32140247
Length = 584
Score = 27.1 bits (57), Expect = 5.6
Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
Frame = -1
Query: 213 DGRILSWSRTRCARTN---GPPRPVREPAQRGRTVAGWWSRMSSVSSVF 76
DG++ +W ++ ++ GPPRP+R Q RT+ + S+S+ F
Sbjct: 362 DGKV-AWRQSAAENSHASRGPPRPLRRSLQVDRTLLAAAPPLPSLSTSF 409
>10_08_0732 - 20173816-20174137,20175824-20176023,20176099-20176998
Length = 473
Score = 26.6 bits (56), Expect = 7.5
Identities = 9/19 (47%), Positives = 10/19 (52%)
Frame = +1
Query: 94 RHAGPPPRYGASALCWLSH 150
R PP +GAS CW H
Sbjct: 322 RRVWPPIAFGASVACWYEH 340
>04_04_1255 +
32119565-32119685,32120052-32120218,32120332-32120532,
32120700-32120747,32121079-32121238,32121540-32121777,
32121874-32122021
Length = 360
Score = 26.6 bits (56), Expect = 7.5
Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 4/56 (7%)
Frame = -1
Query: 213 DGRIL---SWSRTRCARTNGPPRPVREPAQRGRTVAGW-WSRMSSVSSVFVKRTCC 58
DG +L SWS RT PP + + G+ V + W R SVS V +++ C
Sbjct: 140 DGYVLDEESWSDVDYLRTEKPPAWYK--IKGGKIVFPYYWMRAYSVSKVLLEKAAC 193
>04_04_0424 +
25117260-25117332,25117466-25117719,25117849-25117907,
25118206-25118303,25118378-25118467,25118927-25119225,
25119660-25119881
Length = 364
Score = 26.6 bits (56), Expect = 7.5
Identities = 13/31 (41%), Positives = 15/31 (48%)
Frame = -1
Query: 216 RDGRILSWSRTRCARTNGPPRPVREPAQRGR 124
RDG L+ S R PP P+R PA R
Sbjct: 20 RDGNSLNSSELRSMSDRVPPSPLRVPASPSR 50
>01_06_0372 + 28828552-28829913
Length = 453
Score = 26.6 bits (56), Expect = 7.5
Identities = 13/37 (35%), Positives = 15/37 (40%)
Frame = +1
Query: 157 WRAIRACTTCSTPGENSPVPKSSSNRTTTLIQSKTSG 267
W AC CS G S P SSS+ +T G
Sbjct: 117 WTKCGACARCSPRGSPSYYPTSSSSAAFVACGDRTCG 153
>06_01_0228 -
1736373-1736721,1739915-1740120,1740513-1740844,
1740935-1741499
Length = 483
Score = 26.2 bits (55), Expect = 9.9
Identities = 9/19 (47%), Positives = 10/19 (52%)
Frame = +1
Query: 94 RHAGPPPRYGASALCWLSH 150
R PP +GAS CW H
Sbjct: 323 RRVWPPIAFGASMACWYEH 341
>04_01_0046 +
510721-510790,511048-511121,511459-511729,511865-512243,
512550-512771,513130-513259,514311-514367,514756-515046
Length = 497
Score = 26.2 bits (55), Expect = 9.9
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +3
Query: 21 QSEQVDAYVLSESSMFVSRRRWILKTCGT 107
Q+E VDA++ SM V + ++ CGT
Sbjct: 12 QTEDVDAFIKDRGSMGVIPFKTLINLCGT 40
>03_01_0191 +
1531107-1531948,1532101-1532233,1532366-1532450,
1533282-1533502
Length = 426
Score = 26.2 bits (55), Expect = 9.9
Identities = 9/13 (69%), Positives = 12/13 (92%)
Frame = -2
Query: 233 RFELDFGTGEFSP 195
RF L+FG+GEF+P
Sbjct: 244 RFSLEFGSGEFTP 256
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,082,830
Number of Sequences: 37544
Number of extensions: 283959
Number of successful extensions: 932
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 905
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 928
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 706675332
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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