Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20532
         (405 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_51304| Best HMM Match : SAM_decarbox (HMM E-Value=0)                69   2e-12
SB_28998| Best HMM Match : eIF_4EBP (HMM E-Value=4.5)                  29   1.4  
SB_1948| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   1.4  
SB_40725| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.4  
SB_41601| Best HMM Match : zf-C2H2 (HMM E-Value=0.0019)                27   4.4  
SB_57261| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.7  
SB_2827| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   7.7  
SB_57593| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.7  
SB_40630| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.7  
SB_31530| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.7  

>SB_51304| Best HMM Match : SAM_decarbox (HMM E-Value=0)
          Length = 377

 Score = 68.5 bits (160), Expect = 2e-12
 Identities = 35/85 (41%), Positives = 51/85 (60%)
 Frame = +3

Query: 54  ESSMFVSRRRWILKTCGTTTPLRCVRAVLALAQDVAGHSCVHNVFYSRREFARPEVQLKP 233
           ESSMF+S+ R ILKTCGTTT L  ++ +L LA +  G + V ++FYSR  + +P++Q   
Sbjct: 106 ESSMFISKERIILKTCGTTTLLYSIKPLLNLAAEECGLTIVQDLFYSRMNYLKPDMQKDL 165

Query: 234 HDNFDSE*NFWIHFSGMGAPISWAR 308
           H +F+ E  +       GA  S  R
Sbjct: 166 HRSFEKEVQWLDKLFANGAAYSLGR 190


>SB_28998| Best HMM Match : eIF_4EBP (HMM E-Value=4.5)
          Length = 561

 Score = 29.1 bits (62), Expect = 1.4
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = +1

Query: 175 CTTCSTPGENSPVPKSSSNRTTTLIQSKTSGFIFR 279
           C++ +TP  N+  PK++ + T T   SK +G + R
Sbjct: 291 CSSATTPPSNNARPKTTKSTTRTASVSKINGSVAR 325


>SB_1948| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 959

 Score = 29.1 bits (62), Expect = 1.4
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = +1

Query: 175 CTTCSTPGENSPVPKSSSNRTTTLIQSKTSGFIFR 279
           C++ +TP  N+  PK++ + T T   SK +G + R
Sbjct: 693 CSSATTPPSNNARPKTTKSTTRTASVSKINGSVAR 727


>SB_40725| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 428

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +1

Query: 133 LCWLSHRTWRAIRACTTCSTPGEN 204
           + W + R  R IRACTT    G+N
Sbjct: 101 IMWYTQRFTRKIRACTTLKIRGKN 124


>SB_41601| Best HMM Match : zf-C2H2 (HMM E-Value=0.0019)
          Length = 1008

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 17/51 (33%), Positives = 22/51 (43%), Gaps = 4/51 (7%)
 Frame = -1

Query: 219 LRDGRILSWSRTRCARTNGPP----RPVREPAQRGRTVAGWWSRMSSVSSV 79
           LR     +W+      T GP     RP  + AQRG T  GW    S+ + V
Sbjct: 280 LRPDMAQTWATPMGQSTQGPNVPGIRPGMDGAQRGTTPQGWQQAPSTTAQV 330


>SB_57261| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 116

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +1

Query: 202 NSPVPKSSSNRTTTLIQSKTSGFIFRGWARLYHG 303
           +S VP+S+ NR    +  K +  I  GW  ++HG
Sbjct: 36  SSQVPESTYNRVIGALLIKAANEIDDGWLCVHHG 69


>SB_2827| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 506

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = +2

Query: 59  QHVRFTKTLDTEDMRDH 109
           +H  FT+T+DT  MRDH
Sbjct: 372 RHKGFTQTMDTGPMRDH 388


>SB_57593| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 440

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 10/28 (35%), Positives = 13/28 (46%)
 Frame = -1

Query: 186 TRCARTNGPPRPVREPAQRGRTVAGWWS 103
           T C   N P      P+ R + + GWWS
Sbjct: 264 THCFFMNDPDSHKYVPSPRNQRIEGWWS 291


>SB_40630| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2174

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 12/19 (63%), Positives = 17/19 (89%)
 Frame = +2

Query: 188  LLQERIRPSRSPAQTARQL 244
            LL+ER+RPSR PA+ ++QL
Sbjct: 1153 LLEERVRPSR-PARRSKQL 1170


>SB_31530| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 661

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 15/54 (27%), Positives = 25/54 (46%)
 Frame = -1

Query: 252 LNQSCRAV*AGLRDGRILSWSRTRCARTNGPPRPVREPAQRGRTVAGWWSRMSS 91
           L +   AV  GLRD R+  W + R A++       +    RG+    ++S  +S
Sbjct: 560 LYEKALAVRLGLRDSRVQVWFQNRRAKSKRNRSGCQSSTYRGQNEGDYFSPTAS 613


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,413,079
Number of Sequences: 59808
Number of extensions: 315990
Number of successful extensions: 1037
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 979
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1037
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 727815563
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)