Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20532
(405 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z99171-8|CAB16315.1| 368|Caenorhabditis elegans Hypothetical pr... 84 4e-17
Y12500-1|CAA73102.1| 368|Caenorhabditis elegans adenosylmethion... 84 4e-17
Y12499-1|CAA73101.1| 368|Caenorhabditis elegans adenosylmethion... 84 4e-17
AL023853-3|CAA19560.1| 368|Caenorhabditis elegans Hypothetical ... 84 4e-17
U23183-2|AAA64339.2| 89|Caenorhabditis elegans Hypothetical pr... 28 2.2
AL117206-4|CAB60447.1| 447|Caenorhabditis elegans Hypothetical ... 27 5.1
AC024812-2|AAF59555.1| 304|Caenorhabditis elegans Hypothetical ... 26 9.0
>Z99171-8|CAB16315.1| 368|Caenorhabditis elegans Hypothetical
protein F47G4.7 protein.
Length = 368
Score = 83.8 bits (198), Expect = 4e-17
Identities = 40/84 (47%), Positives = 56/84 (66%)
Frame = +3
Query: 3 EIISFTQSEQVDAYVLSESSMFVSRRRWILKTCGTTTPLRCVRAVLALAQDVAGHSCVHN 182
+I+ +E +D+YVLSESS+F+S R ILKTCGTT L + ++ LA AG V +
Sbjct: 65 KILHSKHNESIDSYVLSESSLFISDNRVILKTCGTTRLLAALPVIMQLAGAYAGLDQVQS 124
Query: 183 VFYSRREFARPEVQLKPHDNFDSE 254
V+YSR+ F RP++Q H NFD+E
Sbjct: 125 VYYSRKNFLRPDLQPSLHKNFDAE 148
Score = 38.7 bits (86), Expect = 0.002
Identities = 20/45 (44%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Frame = +2
Query: 203 IRPSRSPAQTARQL*FRVKLLDSFFGDGRAYIMGP-EKDCWYLYT 334
+RP P+ + V+ LDSFF DG AY +G ++D WYLYT
Sbjct: 133 LRPDLQPS-LHKNFDAEVEYLDSFFVDGHAYCLGSLKQDRWYLYT 176
>Y12500-1|CAA73102.1| 368|Caenorhabditis elegans adenosylmethionine
decarboxylase protein.
Length = 368
Score = 83.8 bits (198), Expect = 4e-17
Identities = 40/84 (47%), Positives = 56/84 (66%)
Frame = +3
Query: 3 EIISFTQSEQVDAYVLSESSMFVSRRRWILKTCGTTTPLRCVRAVLALAQDVAGHSCVHN 182
+I+ +E +D+YVLSESS+F+S R ILKTCGTT L + ++ LA AG V +
Sbjct: 65 KILHSKHNESIDSYVLSESSLFISDNRVILKTCGTTRLLAALPVIMQLAGAYAGLDQVQS 124
Query: 183 VFYSRREFARPEVQLKPHDNFDSE 254
V+YSR+ F RP++Q H NFD+E
Sbjct: 125 VYYSRKNFLRPDLQPSLHKNFDAE 148
Score = 38.7 bits (86), Expect = 0.002
Identities = 20/45 (44%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Frame = +2
Query: 203 IRPSRSPAQTARQL*FRVKLLDSFFGDGRAYIMGP-EKDCWYLYT 334
+RP P+ + V+ LDSFF DG AY +G ++D WYLYT
Sbjct: 133 LRPDLQPS-LHKNFDAEVEYLDSFFVDGHAYCLGSLKQDRWYLYT 176
>Y12499-1|CAA73101.1| 368|Caenorhabditis elegans adenosylmethionine
decarboxylase protein.
Length = 368
Score = 83.8 bits (198), Expect = 4e-17
Identities = 40/84 (47%), Positives = 56/84 (66%)
Frame = +3
Query: 3 EIISFTQSEQVDAYVLSESSMFVSRRRWILKTCGTTTPLRCVRAVLALAQDVAGHSCVHN 182
+I+ +E +D+YVLSESS+F+S R ILKTCGTT L + ++ LA AG V +
Sbjct: 65 KILHSKHNESIDSYVLSESSLFISDNRVILKTCGTTRLLAALPVIMQLAGAYAGLDQVQS 124
Query: 183 VFYSRREFARPEVQLKPHDNFDSE 254
V+YSR+ F RP++Q H NFD+E
Sbjct: 125 VYYSRKNFLRPDLQPSLHKNFDAE 148
Score = 38.7 bits (86), Expect = 0.002
Identities = 20/45 (44%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Frame = +2
Query: 203 IRPSRSPAQTARQL*FRVKLLDSFFGDGRAYIMGP-EKDCWYLYT 334
+RP P+ + V+ LDSFF DG AY +G ++D WYLYT
Sbjct: 133 LRPDLQPS-LHKNFDAEVEYLDSFFVDGHAYCLGSLKQDRWYLYT 176
>AL023853-3|CAA19560.1| 368|Caenorhabditis elegans Hypothetical
protein F47G4.7 protein.
Length = 368
Score = 83.8 bits (198), Expect = 4e-17
Identities = 40/84 (47%), Positives = 56/84 (66%)
Frame = +3
Query: 3 EIISFTQSEQVDAYVLSESSMFVSRRRWILKTCGTTTPLRCVRAVLALAQDVAGHSCVHN 182
+I+ +E +D+YVLSESS+F+S R ILKTCGTT L + ++ LA AG V +
Sbjct: 65 KILHSKHNESIDSYVLSESSLFISDNRVILKTCGTTRLLAALPVIMQLAGAYAGLDQVQS 124
Query: 183 VFYSRREFARPEVQLKPHDNFDSE 254
V+YSR+ F RP++Q H NFD+E
Sbjct: 125 VYYSRKNFLRPDLQPSLHKNFDAE 148
Score = 38.7 bits (86), Expect = 0.002
Identities = 20/45 (44%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Frame = +2
Query: 203 IRPSRSPAQTARQL*FRVKLLDSFFGDGRAYIMGP-EKDCWYLYT 334
+RP P+ + V+ LDSFF DG AY +G ++D WYLYT
Sbjct: 133 LRPDLQPS-LHKNFDAEVEYLDSFFVDGHAYCLGSLKQDRWYLYT 176
>U23183-2|AAA64339.2| 89|Caenorhabditis elegans Hypothetical
protein K01A12.2 protein.
Length = 89
Score = 28.3 bits (60), Expect = 2.2
Identities = 15/31 (48%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Frame = +1
Query: 151 RTW-RAIRACTTCSTPGENSPVPKSSSNRTT 240
R W RA RAC CSTP S S+ R+T
Sbjct: 53 REWERAHRACVFCSTPNPTSKSMLSNQLRST 83
>AL117206-4|CAB60447.1| 447|Caenorhabditis elegans Hypothetical
protein Y67A10A.6 protein.
Length = 447
Score = 27.1 bits (57), Expect = 5.1
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = +1
Query: 106 PPPRYGASALCWLSHRTWRAIRACTTCSTPGE 201
PPP G LC++ H R I+ C C G+
Sbjct: 238 PPPGIGTHDLCYMCH--GRGIKECHHCKGGGK 267
>AC024812-2|AAF59555.1| 304|Caenorhabditis elegans Hypothetical
protein Y54E10BR.3 protein.
Length = 304
Score = 26.2 bits (55), Expect = 9.0
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +3
Query: 312 KTVGICIPCCRWKVQWQRWRKSSRKLSRDA 401
KT C P CR KV + W+K+ K ++A
Sbjct: 270 KTKNSC-PVCRQKVNMKEWKKNHLKKLQEA 298
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,586,853
Number of Sequences: 27780
Number of extensions: 211667
Number of successful extensions: 559
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 540
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 559
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 641068680
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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