Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20532
         (405 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    24   0.75 
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    24   0.75 
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   4.0  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          21   4.0  
AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alph...    20   9.3  

>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 23.8 bits (49), Expect = 0.75
 Identities = 6/9 (66%), Positives = 7/9 (77%)
 Frame = +3

Query: 333 PCCRWKVQW 359
           PCC WK+ W
Sbjct: 487 PCCWWKICW 495


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 23.8 bits (49), Expect = 0.75
 Identities = 6/9 (66%), Positives = 7/9 (77%)
 Frame = +3

Query: 333 PCCRWKVQW 359
           PCC WK+ W
Sbjct: 540 PCCWWKICW 548


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 21.4 bits (43), Expect = 4.0
 Identities = 20/85 (23%), Positives = 34/85 (40%), Gaps = 4/85 (4%)
 Frame = +1

Query: 4    RSSLLRRVSKSTLTYLVRAACSFHEDAGY*RHAGPPPRYGASALCWLSHRTWR----AIR 171
            R++L   +   T   ++  A + + +    R   P  R  A+ L W   R W     AI 
Sbjct: 1146 RAALHEALRGRTAQLIIVQAENAYPEVELDRELRPYLRTAAAILTWNEKRFWERLRYAIP 1205

Query: 172  ACTTCSTPGENSPVPKSSSNRTTTL 246
            +    S   ++SP+    +  T TL
Sbjct: 1206 SAGDISIESKSSPLVYKRNINTYTL 1230


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 21.4 bits (43), Expect = 4.0
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -3

Query: 334 GIQIPTVFFRAHDIGAPIPEK 272
           GI   T++ RAH +G   P+K
Sbjct: 438 GIPSTTLWQRAHRLGIDTPKK 458


>AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alpha
           protein precursor protein.
          Length = 153

 Score = 20.2 bits (40), Expect = 9.3
 Identities = 6/17 (35%), Positives = 9/17 (52%)
 Frame = +1

Query: 151 RTWRAIRACTTCSTPGE 201
           + W+  R+C  C   GE
Sbjct: 67  KIWQMERSCMCCQESGE 83


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 115,148
Number of Sequences: 438
Number of extensions: 2547
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10132494
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)