Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20532
(405 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g15950.1 68418.m01865 adenosylmethionine decarboxylase family... 61 2e-10
At3g02470.1 68416.m00235 adenosylmethionine decarboxylase family... 60 4e-10
At3g25570.1 68416.m03180 adenosylmethionine decarboxylase family... 60 7e-10
At5g18930.1 68418.m02248 adenosylmethionine decarboxylase family... 59 1e-09
At3g18500.1 68416.m02351 nocturnin-related contains weak similar... 29 0.89
At3g49260.2 68416.m05384 calmodulin-binding family protein low s... 29 1.6
At3g49260.1 68416.m05383 calmodulin-binding family protein low s... 29 1.6
At1g54150.1 68414.m06173 zinc finger (C3HC4-type RING finger) fa... 29 1.6
At1g17450.1 68414.m02137 ATP phosphoribosyltransferase -related ... 28 2.7
At4g25650.2 68417.m03694 Rieske [2Fe-2S] domain-containing prote... 27 4.8
At4g25650.1 68417.m03693 Rieske [2Fe-2S] domain-containing prote... 27 4.8
At2g45340.1 68415.m05642 leucine-rich repeat transmembrane prote... 26 8.3
>At5g15950.1 68418.m01865 adenosylmethionine decarboxylase family
protein contains Pfam profile: PF01536
adenosylmethionine decarboxylase
Length = 362
Score = 61.3 bits (142), Expect = 2e-10
Identities = 37/95 (38%), Positives = 56/95 (58%), Gaps = 1/95 (1%)
Frame = +3
Query: 6 IISFTQSEQVDAYVLSESSMFVSRRRWILKTCGTTTPLRCVRAVLALAQDVAGHSCVHNV 185
I+S ++Q+D+YVLSESS+F+ + ++KTCGTT L + +L LA +++ V V
Sbjct: 52 IVSSLSNDQLDSYVLSESSLFIFPYKIVIKTCGTTKLLLSIEPLLRLAGELS--LDVKAV 109
Query: 186 FYSRREFARPEVQLKPHDNFDSE*NFWI-HFSGMG 287
Y+R F P Q PH NF E + HF+ +G
Sbjct: 110 RYTRGSFLCPGGQPFPHRNFSEEVSVLDGHFAKLG 144
>At3g02470.1 68416.m00235 adenosylmethionine decarboxylase family
protein contains Pfam profile: PF01536
adenosylmethionine decarboxylase
Length = 366
Score = 60.5 bits (140), Expect = 4e-10
Identities = 38/95 (40%), Positives = 56/95 (58%), Gaps = 1/95 (1%)
Frame = +3
Query: 6 IISFTQSEQVDAYVLSESSMFVSRRRWILKTCGTTTPLRCVRAVLALAQDVAGHSCVHNV 185
I+S ++Q+D+YVLSESS FV + I+KTCGTT L + +L LA +++ V +V
Sbjct: 52 IVSSLSNDQLDSYVLSESSFFVYPYKVIIKTCGTTKLLLSIPPLLKLAGELS--LSVKSV 109
Query: 186 FYSRREFARPEVQLKPHDNFDSE*NFWI-HFSGMG 287
Y+R F P Q PH +F E + HF+ +G
Sbjct: 110 KYTRGSFLCPGGQPFPHRSFSEEVSVLDGHFTQLG 144
>At3g25570.1 68416.m03180 adenosylmethionine decarboxylase family
protein contains Pfam profile: PF01536
adenosylmethionine decarboxylase
Length = 349
Score = 59.7 bits (138), Expect = 7e-10
Identities = 35/83 (42%), Positives = 47/83 (56%)
Frame = +3
Query: 6 IISFTQSEQVDAYVLSESSMFVSRRRWILKTCGTTTPLRCVRAVLALAQDVAGHSCVHNV 185
I+S + VD+YVLSESS+FV + I+KTCGTT L + +L LA + V +V
Sbjct: 52 IVSSLTNSFVDSYVLSESSLFVYPYKIIIKTCGTTKLLLSIPHILRLADSLC--LTVKSV 109
Query: 186 FYSRREFARPEVQLKPHDNFDSE 254
Y+R F P Q PH +F E
Sbjct: 110 RYTRGSFIFPGAQSYPHRSFSEE 132
>At5g18930.1 68418.m02248 adenosylmethionine decarboxylase family
protein contains Pfam profile: PF01536
adenosylmethionine decarboxylase
Length = 347
Score = 59.3 bits (137), Expect = 1e-09
Identities = 32/83 (38%), Positives = 49/83 (59%)
Frame = +3
Query: 6 IISFTQSEQVDAYVLSESSMFVSRRRWILKTCGTTTPLRCVRAVLALAQDVAGHSCVHNV 185
++S + DAYVLSESS+FV + I+KTCGTT L+ +R ++ LA+++ +
Sbjct: 50 VVSAVANRSFDAYVLSESSLFVYPTKIIIKTCGTTQLLKSIRPLIHLARNLG--LTLRAC 107
Query: 186 FYSRREFARPEVQLKPHDNFDSE 254
YSR F P+ Q P+ +F E
Sbjct: 108 RYSRGSFIFPKAQPFPYTSFKDE 130
>At3g18500.1 68416.m02351 nocturnin-related contains weak similarity
to Nocturnin (CCR4 protein homolog) (Swiss-Prot:O35710)
[Mus musculus]
Length = 262
Score = 29.5 bits (63), Expect = 0.89
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = +1
Query: 136 CWLSHRTWRAIRACTTCSTPGENSPVPKSSSNRT 237
C LS ++R+ C + ST G + P+SSSNR+
Sbjct: 34 CPLSSLSFRSSFVCCSSSTSGPSDSNPESSSNRS 67
>At3g49260.2 68416.m05384 calmodulin-binding family protein low
similarity to SF16 protein [Helianthus annuus]
GI:560150; contains Pfam profile PF00612: IQ
calmodulin-binding motif
Length = 471
Score = 28.7 bits (61), Expect = 1.6
Identities = 14/35 (40%), Positives = 15/35 (42%)
Frame = +1
Query: 181 TCSTPGENSPVPKSSSNRTTTLIQSKTSGFIFRGW 285
T PG SP PKS R +GF RGW
Sbjct: 433 TTGYPGPRSPNPKSDIRRKPVSPSQSPTGFGKRGW 467
>At3g49260.1 68416.m05383 calmodulin-binding family protein low
similarity to SF16 protein [Helianthus annuus]
GI:560150; contains Pfam profile PF00612: IQ
calmodulin-binding motif
Length = 471
Score = 28.7 bits (61), Expect = 1.6
Identities = 14/35 (40%), Positives = 15/35 (42%)
Frame = +1
Query: 181 TCSTPGENSPVPKSSSNRTTTLIQSKTSGFIFRGW 285
T PG SP PKS R +GF RGW
Sbjct: 433 TTGYPGPRSPNPKSDIRRKPVSPSQSPTGFGKRGW 467
>At1g54150.1 68414.m06173 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 383
Score = 28.7 bits (61), Expect = 1.6
Identities = 12/42 (28%), Positives = 21/42 (50%)
Frame = +1
Query: 199 ENSPVPKSSSNRTTTLIQSKTSGFIFRGWARLYHGPGKRLLV 324
+N+ V S LI +T +++ GW RL+ G R ++
Sbjct: 102 KNNNVLISPETGDKALIIQRTQTYVYSGWKRLFQSTGHRFML 143
>At1g17450.1 68414.m02137 ATP phosphoribosyltransferase -related
contains weak similarity to Swiss-Prot:P10366 ATP
phosphoribosyltransferase [Escherichia coli]
Length = 1402
Score = 27.9 bits (59), Expect = 2.7
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = -2
Query: 227 ELDFGTGEFSPGVEHVVHARMARHVLCESQ 138
+LDFG FS V HV HA+ R V +S+
Sbjct: 526 QLDFGFKAFSYLVMHVYHAKHGRRVKSKSK 555
>At4g25650.2 68417.m03694 Rieske [2Fe-2S] domain-containing protein
similar to cell death suppressor protein lls1 from Zea
mays [gi:1935909], Rieske iron-sulfur protein Tic55 from
Pisum sativum [gi:2764524]; contains Pfam PF00355 Rieske
[2Fe-2S] domain
Length = 559
Score = 27.1 bits (57), Expect = 4.8
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = -1
Query: 276 KNESRSFTLNQSCRAV*AGLRDGRILSWSRTRC 178
+NE + ++ +C A L DGRI W R +C
Sbjct: 115 RNEKQWKVMDDTCPHRLAPLSDGRIDQWGRLQC 147
>At4g25650.1 68417.m03693 Rieske [2Fe-2S] domain-containing protein
similar to cell death suppressor protein lls1 from Zea
mays [gi:1935909], Rieske iron-sulfur protein Tic55 from
Pisum sativum [gi:2764524]; contains Pfam PF00355 Rieske
[2Fe-2S] domain
Length = 536
Score = 27.1 bits (57), Expect = 4.8
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = -1
Query: 276 KNESRSFTLNQSCRAV*AGLRDGRILSWSRTRC 178
+NE + ++ +C A L DGRI W R +C
Sbjct: 115 RNEKQWKVMDDTCPHRLAPLSDGRIDQWGRLQC 147
>At2g45340.1 68415.m05642 leucine-rich repeat transmembrane protein
kinase, putative
Length = 691
Score = 26.2 bits (55), Expect = 8.3
Identities = 10/33 (30%), Positives = 20/33 (60%)
Frame = +1
Query: 166 IRACTTCSTPGENSPVPKSSSNRTTTLIQSKTS 264
++ACT + P N P P + +N TT ++ +++
Sbjct: 255 LKACTGLNGPNPNRPDPTNPTNFTTVDVKPESA 287
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,121,868
Number of Sequences: 28952
Number of extensions: 201108
Number of successful extensions: 574
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 564
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 571
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 595686720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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