Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20531
(485 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P25398 Cluster: 40S ribosomal protein S12; n=129; Eukar... 98 8e-20
UniRef50_Q9SKZ3 Cluster: 40S ribosomal protein S12-2; n=3; Magno... 89 5e-17
UniRef50_Q201W7 Cluster: 40S ribosomal protein S12; n=1; Acyrtho... 88 1e-16
UniRef50_Q5B5V7 Cluster: 40S ribosomal protein S12; n=1; Emerice... 86 3e-16
UniRef50_A2YI73 Cluster: 40S ribosomal protein S12; n=5; Oryza s... 85 6e-16
UniRef50_Q5DE28 Cluster: 40S ribosomal protein S12; n=2; Platyhe... 82 7e-15
UniRef50_Q54PX9 Cluster: 40S ribosomal protein S12; n=1; Dictyos... 77 2e-13
UniRef50_P48589 Cluster: 40S ribosomal protein S12; n=13; Saccha... 70 2e-11
UniRef50_Q5CFW0 Cluster: 40S ribosomal protein S12; n=4; Apicomp... 70 3e-11
UniRef50_Q8IGF9 Cluster: RH29995p; n=2; Drosophila melanogaster|... 69 6e-11
UniRef50_Q03253 Cluster: 40S ribosomal protein S12; n=10; Trypan... 65 9e-10
UniRef50_UPI0000D633F9 Cluster: UPI0000D633F9 related cluster; n... 61 1e-08
UniRef50_O97249 Cluster: 40S ribosomal protein S12; n=5; Plasmod... 60 3e-08
UniRef50_Q22W26 Cluster: 40S ribosomal protein S12; n=1; Tetrahy... 55 7e-07
UniRef50_A7AM93 Cluster: 40S ribosomal protein S12, putative; n=... 53 4e-06
UniRef50_A0EEB1 Cluster: 40S ribosomal protein S12; n=7; Paramec... 53 4e-06
UniRef50_Q7R1B2 Cluster: GLP_306_61647_62024; n=1; Giardia lambl... 48 9e-05
UniRef50_A0C845 Cluster: Chromosome undetermined scaffold_157, w... 44 0.002
UniRef50_UPI00004982F0 Cluster: 40S ribosomal protein S12; n=3; ... 42 0.010
UniRef50_Q017M6 Cluster: Homology to unknown gene; n=1; Ostreoco... 38 0.16
UniRef50_Q3LWI8 Cluster: Ribosomal protein S12; n=1; Bigelowiell... 37 0.28
UniRef50_Q3SAE1 Cluster: Ribosomal protein L7A; n=2; Naegleria g... 35 0.85
UniRef50_P24522 Cluster: Growth arrest and DNA-damage-inducible ... 35 0.85
UniRef50_Q1X873 Cluster: Fanconi anemia B; n=3; Danio rerio|Rep:... 34 1.5
UniRef50_Q140Y0 Cluster: Hypothetical exported protein; n=3; Bur... 34 2.0
UniRef50_Q3W1D8 Cluster: Catalytic domain of components of vario... 33 2.6
UniRef50_Q0FRC5 Cluster: Serine/threonine protein kinase; n=1; R... 33 3.4
UniRef50_Q8GZ45 Cluster: Probable threonyl-tRNA synthetase, cyto... 33 3.4
UniRef50_UPI0001555481 Cluster: PREDICTED: similar to structural... 33 4.5
UniRef50_A2FQ73 Cluster: Putative uncharacterized protein; n=1; ... 33 4.5
UniRef50_Q6ZDB7 Cluster: Putative pentatricopeptide (PPR) repeat... 32 6.0
UniRef50_UPI00015609DE Cluster: PREDICTED: similar to family wit... 32 7.9
UniRef50_Q64TS9 Cluster: Putative uncharacterized protein; n=2; ... 32 7.9
UniRef50_A5C1P4 Cluster: Putative uncharacterized protein; n=1; ... 32 7.9
>UniRef50_P25398 Cluster: 40S ribosomal protein S12; n=129;
Eukaryota|Rep: 40S ribosomal protein S12 - Homo sapiens
(Human)
Length = 132
Score = 98.3 bits (234), Expect = 8e-20
Identities = 39/58 (67%), Positives = 51/58 (87%)
Frame = +3
Query: 255 HQIPLVKVDNNKKLGEWAGLCKIDKDGKARKIVGCSCVVIKDFGEETPALDVLKDYLK 428
HQI L+KVD+NKKLGEW GLCKID++G RK+VGCSCVV+KD+G+E+ A DV+++Y K
Sbjct: 72 HQINLIKVDDNKKLGEWVGLCKIDREGNPRKVVGCSCVVVKDYGKESQAKDVIEEYFK 129
Score = 94.7 bits (225), Expect = 1e-18
Identities = 50/98 (51%), Positives = 62/98 (63%)
Frame = +1
Query: 58 ILSGNNMDVNVALQEVLKTALIHGGLVHGLHEAAKALDKRQAVLCVLAENCDEAAYKKLV 237
I +G MDVN ALQEVLKTALIH GL G+ EAAKALDKRQA LCV A NCDE Y KLV
Sbjct: 6 IAAGGVMDVNTALQEVLKTALIHDGLARGIREAAKALDKRQAHLCVQASNCDEPMYVKLV 65
Query: 238 QALCNDIRFHWSRLTTTKSLENGLVSARLTRMARQGKL 351
+AL + + + ++ K L + ++ R K+
Sbjct: 66 EALLAEHQINLIKVDDNKKLGEWVGLCKIDREGNPRKV 103
>UniRef50_Q9SKZ3 Cluster: 40S ribosomal protein S12-2; n=3;
Magnoliophyta|Rep: 40S ribosomal protein S12-2 -
Arabidopsis thaliana (Mouse-ear cress)
Length = 144
Score = 89.0 bits (211), Expect = 5e-17
Identities = 38/57 (66%), Positives = 47/57 (82%)
Frame = +3
Query: 255 HQIPLVKVDNNKKLGEWAGLCKIDKDGKARKIVGCSCVVIKDFGEETPALDVLKDYL 425
H I L+ V + K LGEWAGLCKID +G ARK+VGCSC+VIKDFGEET AL+++K +L
Sbjct: 85 HSIKLLTVPSAKTLGEWAGLCKIDSEGNARKVVGCSCLVIKDFGEETTALNIVKKHL 141
Score = 73.3 bits (172), Expect = 3e-12
Identities = 36/74 (48%), Positives = 52/74 (70%)
Frame = +1
Query: 73 NMDVNVALQEVLKTALIHGGLVHGLHEAAKALDKRQAVLCVLAENCDEAAYKKLVQALCN 252
+MDV+ AL+ ++ + +GG+V GLHE+AK ++KR A LCVLAE+C++ Y KLV+ALC
Sbjct: 24 DMDVSTALELTVRKSRAYGGVVRGLHESAKLIEKRNAQLCVLAEDCNQPDYVKLVKALCA 83
Query: 253 DIRFHWSRLTTTKS 294
D H +L T S
Sbjct: 84 D---HSIKLLTVPS 94
>UniRef50_Q201W7 Cluster: 40S ribosomal protein S12; n=1;
Acyrthosiphon pisum|Rep: 40S ribosomal protein S12 -
Acyrthosiphon pisum (Pea aphid)
Length = 136
Score = 87.8 bits (208), Expect = 1e-16
Identities = 36/64 (56%), Positives = 49/64 (76%)
Frame = +3
Query: 237 SGSVQRHQIPLVKVDNNKKLGEWAGLCKIDKDGKARKIVGCSCVVIKDFGEETPALDVLK 416
+G + PL++VD+NK LGEW+GLCK D +G+ARK+VGCSCVV+K FG++T LD L
Sbjct: 68 TGLCAENSTPLIEVDSNKTLGEWSGLCKYDNNGQARKVVGCSCVVVKHFGDDTQELDTLL 127
Query: 417 DYLK 428
+ LK
Sbjct: 128 EILK 131
Score = 77.4 bits (182), Expect = 2e-13
Identities = 39/76 (51%), Positives = 51/76 (67%)
Frame = +1
Query: 22 MADVEVEVPTNPILSGNNMDVNVALQEVLKTALIHGGLVHGLHEAAKALDKRQAVLCVLA 201
M+DVE V G + ++ L+EVLK A ++G L+HG+HE KAL+K+ VLCVLA
Sbjct: 1 MSDVEDAVEV-----GEHGEMYNLLKEVLKNAQVNGSLLHGIHEGTKALEKKLGVLCVLA 55
Query: 202 ENCDEAAYKKLVQALC 249
NC+EA YKKLV LC
Sbjct: 56 NNCEEAMYKKLVTGLC 71
>UniRef50_Q5B5V7 Cluster: 40S ribosomal protein S12; n=1; Emericella
nidulans|Rep: 40S ribosomal protein S12 - Emericella
nidulans (Aspergillus nidulans)
Length = 183
Score = 86.2 bits (204), Expect = 3e-16
Identities = 46/78 (58%), Positives = 55/78 (70%)
Frame = +1
Query: 22 MADVEVEVPTNPILSGNNMDVNVALQEVLKTALIHGGLVHGLHEAAKALDKRQAVLCVLA 201
+A EVEVP +G M V AL+ VL+ ALIH GL GL EAAKALD+RQA +CVL
Sbjct: 13 VAAEEVEVPAESG-AGGQMSVLDALKGVLRIALIHDGLARGLREAAKALDRRQAHMCVLN 71
Query: 202 ENCDEAAYKKLVQALCND 255
E C+E AYKKLV ALC++
Sbjct: 72 EGCEEEAYKKLVVALCSE 89
Score = 49.6 bits (113), Expect(2) = 1e-10
Identities = 19/37 (51%), Positives = 29/37 (78%)
Frame = +3
Query: 318 KIDKDGKARKIVGCSCVVIKDFGEETPALDVLKDYLK 428
++D++G ARK+V CSCVV+KD+GEE+ VL +Y +
Sbjct: 144 QLDREGNARKVVNCSCVVVKDWGEESQERSVLLNYFQ 180
Score = 38.3 bits (85), Expect(2) = 1e-10
Identities = 14/21 (66%), Positives = 17/21 (80%)
Frame = +3
Query: 255 HQIPLVKVDNNKKLGEWAGLC 317
H+IPL+KV + K LGEW GLC
Sbjct: 90 HKIPLIKVPDGKMLGEWVGLC 110
>UniRef50_A2YI73 Cluster: 40S ribosomal protein S12; n=5; Oryza
sativa|Rep: 40S ribosomal protein S12 - Oryza sativa
subsp. indica (Rice)
Length = 156
Score = 85.4 bits (202), Expect = 6e-16
Identities = 43/90 (47%), Positives = 58/90 (64%)
Frame = +1
Query: 28 DVEVEVPTNPILSGNNMDVNVALQEVLKTALIHGGLVHGLHEAAKALDKRQAVLCVLAEN 207
+ +E P P+L G MD+ ALQ V+K + H GLV GL EAAKA++K A LCVLAE+
Sbjct: 4 ETPIETPAAPVL-GEPMDLMTALQLVMKKSSAHDGLVKGLREAAKAIEKHAAQLCVLAED 62
Query: 208 CDEAAYKKLVQALCNDIRFHWSRLTTTKSL 297
CD+ Y KLV+ALC + H + + K+L
Sbjct: 63 CDQPDYVKLVKALCAEHNVHLVTVPSAKTL 92
Score = 73.7 bits (173), Expect = 2e-12
Identities = 37/76 (48%), Positives = 49/76 (64%), Gaps = 18/76 (23%)
Frame = +3
Query: 255 HQIPLVKVDNNKKLGEWAGL------------------CKIDKDGKARKIVGCSCVVIKD 380
H + LV V + K LGEWAGL CKID +GKARK+VGCSCVV+KD
Sbjct: 79 HNVHLVTVPSAKTLGEWAGLYEKPSCPGFNNTYCHSQLCKIDSEGKARKVVGCSCVVVKD 138
Query: 381 FGEETPALDVLKDYLK 428
+GEE+ L++++DY+K
Sbjct: 139 YGEESEGLNIVQDYVK 154
>UniRef50_Q5DE28 Cluster: 40S ribosomal protein S12; n=2;
Platyhelminthes|Rep: 40S ribosomal protein S12 -
Schistosoma japonicum (Blood fluke)
Length = 131
Score = 81.8 bits (193), Expect = 7e-15
Identities = 35/53 (66%), Positives = 42/53 (79%)
Frame = +3
Query: 255 HQIPLVKVDNNKKLGEWAGLCKIDKDGKARKIVGCSCVVIKDFGEETPALDVL 413
H IPLVKV +NKKLGEW+GLCK DK+GKARK+V SC+V+ D GEE+ L L
Sbjct: 66 HGIPLVKVPDNKKLGEWSGLCKYDKEGKARKVVSASCIVVTDIGEESYGLKYL 118
Score = 66.1 bits (154), Expect = 4e-10
Identities = 28/60 (46%), Positives = 44/60 (73%)
Frame = +1
Query: 76 MDVNVALQEVLKTALIHGGLVHGLHEAAKALDKRQAVLCVLAENCDEAAYKKLVQALCND 255
MD++ A+Q+VLK A+ G+ GL++ K +++R VLC LA+NC+E AY L++ALCN+
Sbjct: 6 MDLDSAVQQVLKNAVKCRGICRGLNQCTKLIEQRGVVLCFLADNCNEKAYTTLIEALCNE 65
>UniRef50_Q54PX9 Cluster: 40S ribosomal protein S12; n=1;
Dictyostelium discoideum AX4|Rep: 40S ribosomal protein
S12 - Dictyostelium discoideum AX4
Length = 136
Score = 77.4 bits (182), Expect = 2e-13
Identities = 33/57 (57%), Positives = 43/57 (75%)
Frame = +3
Query: 255 HQIPLVKVDNNKKLGEWAGLCKIDKDGKARKIVGCSCVVIKDFGEETPALDVLKDYL 425
H IPL++V +NK LGEWAGLCK+DKD ARK+V CS +VIK FG+E+ L +Y+
Sbjct: 77 HNIPLIEVPDNKALGEWAGLCKLDKDLAARKVVACSTLVIKTFGKESDDYKFLMEYI 133
Score = 70.9 bits (166), Expect = 1e-11
Identities = 43/112 (38%), Positives = 59/112 (52%), Gaps = 4/112 (3%)
Frame = +1
Query: 55 PILSGN----NMDVNVALQEVLKTALIHGGLVHGLHEAAKALDKRQAVLCVLAENCDEAA 222
P+++ N N D VALQ+V+K +L G+ GLHE KALDKR A LCVLA NCDE
Sbjct: 6 PVIAANPLEKNTDPMVALQKVIKESLAVQGVARGLHETVKALDKRTARLCVLASNCDEPN 65
Query: 223 YKKLVQALCNDIRFHWSRLTTTKSLENGLVSARLTRMARQGKLSAAPVLSSK 378
+ +LV+AL + + K+L +L + K+ A L K
Sbjct: 66 FVRLVKALATEHNIPLIEVPDNKALGEWAGLCKLDKDLAARKVVACSTLVIK 117
>UniRef50_P48589 Cluster: 40S ribosomal protein S12; n=13;
Saccharomycetales|Rep: 40S ribosomal protein S12 -
Saccharomyces cerevisiae (Baker's yeast)
Length = 143
Score = 70.1 bits (164), Expect = 2e-11
Identities = 29/56 (51%), Positives = 45/56 (80%)
Frame = +3
Query: 255 HQIPLVKVDNNKKLGEWAGLCKIDKDGKARKIVGCSCVVIKDFGEETPALDVLKDY 422
+++PL+KV + K+LGEWAGL KID++G ARK+VG S VV+K++G ET L ++ ++
Sbjct: 84 NKVPLIKVADAKQLGEWAGLGKIDREGNARKVVGASVVVVKNWGAETDELSMIMEH 139
Score = 59.7 bits (138), Expect = 3e-08
Identities = 35/81 (43%), Positives = 49/81 (60%), Gaps = 3/81 (3%)
Frame = +1
Query: 22 MADVE--VEVPTNPILSGN-NMDVNVALQEVLKTALIHGGLVHGLHEAAKALDKRQAVLC 192
M+DVE VEV ++ + + AL+ VL+TAL+H GL GL E+ KAL + +A+L
Sbjct: 1 MSDVEEVVEVQEETVVEQTAEVTIEDALKVVLRTALVHDGLARGLRESTKALTRGEALLV 60
Query: 193 VLAENCDEAAYKKLVQALCND 255
VL + EA KLV+ L ND
Sbjct: 61 VLVSSVTEANIIKLVEGLAND 81
>UniRef50_Q5CFW0 Cluster: 40S ribosomal protein S12; n=4;
Apicomplexa|Rep: 40S ribosomal protein S12 -
Cryptosporidium hominis
Length = 143
Score = 69.7 bits (163), Expect = 3e-11
Identities = 32/80 (40%), Positives = 52/80 (65%), Gaps = 2/80 (2%)
Frame = +1
Query: 22 MADVEVEVPTNPILSGNNM--DVNVALQEVLKTALIHGGLVHGLHEAAKALDKRQAVLCV 195
M+DVE++ + + D+ A++ VLK + + GGL+ GL+E ALD ++A +C
Sbjct: 1 MSDVEIDQEGTQVQVEQEVVNDLTTAIRYVLKNSFVRGGLLRGLNEVVLALDSKKAQVCF 60
Query: 196 LAENCDEAAYKKLVQALCND 255
LAE+C+E YK+LV+ALC +
Sbjct: 61 LAESCEEDCYKQLVEALCRE 80
Score = 62.1 bits (144), Expect = 6e-09
Identities = 26/55 (47%), Positives = 40/55 (72%)
Frame = +3
Query: 261 IPLVKVDNNKKLGEWAGLCKIDKDGKARKIVGCSCVVIKDFGEETPALDVLKDYL 425
IPL+ V ++K+LGE AGLCK+D++G RK+VG + V I D+G E+ A L+ ++
Sbjct: 83 IPLIMVPDSKELGEMAGLCKVDREGNPRKVVGAASVAIVDYGVESEAYHYLQKHI 137
>UniRef50_Q8IGF9 Cluster: RH29995p; n=2; Drosophila
melanogaster|Rep: RH29995p - Drosophila melanogaster
(Fruit fly)
Length = 127
Score = 68.9 bits (161), Expect = 6e-11
Identities = 34/53 (64%), Positives = 43/53 (81%), Gaps = 1/53 (1%)
Frame = +1
Query: 19 TMADVEVEVPTN-PILSGNNMDVNVALQEVLKTALIHGGLVHGLHEAAKALDK 174
TMADV+V+VP+ P+L G MD+N ALQEVLK +LI GL+HG+H+A KALDK
Sbjct: 16 TMADVDVDVPSAAPVLDGA-MDINTALQEVLKKSLIADGLIHGIHQACKALDK 67
>UniRef50_Q03253 Cluster: 40S ribosomal protein S12; n=10;
Trypanosomatidae|Rep: 40S ribosomal protein S12 -
Trypanosoma brucei brucei
Length = 144
Score = 64.9 bits (151), Expect = 9e-10
Identities = 27/60 (45%), Positives = 40/60 (66%)
Frame = +3
Query: 249 QRHQIPLVKVDNNKKLGEWAGLCKIDKDGKARKIVGCSCVVIKDFGEETPALDVLKDYLK 428
+++ I LV +D +KL +WAGL ++ DG RK + CSC+ ++DFGE T ALD L L+
Sbjct: 85 KQNNIDLVSMDEREKLAQWAGLTRMAADGSVRKTLKCSCLAVRDFGERTKALDYLLSQLQ 144
Score = 58.4 bits (135), Expect = 8e-08
Identities = 37/87 (42%), Positives = 47/87 (54%)
Frame = +1
Query: 91 ALQEVLKTALIHGGLVHGLHEAAKALDKRQAVLCVLAENCDEAAYKKLVQALCNDIRFHW 270
AL+ VL A GL+ GL E +ALD+R A LCVLA++C++ YKKLV AL
Sbjct: 32 ALRIVLMKARETNGLICGLSEVTRALDRRTAHLCVLADDCEDEEYKKLVTALAKQNNID- 90
Query: 271 SRLTTTKSLENGLVSARLTRMARQGKL 351
L + E A LTRMA G +
Sbjct: 91 --LVSMDEREKLAQWAGLTRMAADGSV 115
>UniRef50_UPI0000D633F9 Cluster: UPI0000D633F9 related cluster; n=1;
Mus musculus|Rep: UPI0000D633F9 UniRef100 entry - Mus
musculus
Length = 132
Score = 60.9 bits (141), Expect = 1e-08
Identities = 25/58 (43%), Positives = 40/58 (68%)
Frame = +3
Query: 255 HQIPLVKVDNNKKLGEWAGLCKIDKDGKARKIVGCSCVVIKDFGEETPALDVLKDYLK 428
HQI L+K D+ + L EW + D++GK+ K+V C+ VV+K +G+E+ A D +K+Y K
Sbjct: 72 HQISLIKDDDKRNLREWGRPLQTDQEGKSNKVVVCNSVVVKGYGKESQAKDDIKEYFK 129
Score = 32.3 bits (70), Expect = 6.0
Identities = 23/65 (35%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
Frame = +1
Query: 58 ILSGNNMDVNVALQEVLKTALIHGG-LVHGLHEAAKALDKRQAVLCVLAENCDEAAYKKL 234
+L + +D+N L +VL A H G LV + A A L NC+E Y KL
Sbjct: 6 LLGESKIDINTDLGDVLTYAPSHDGKLVQDTNTAKLPRPSTSAKLS-FPVNCNEPMYVKL 64
Query: 235 VQALC 249
V+A C
Sbjct: 65 VKAHC 69
>UniRef50_O97249 Cluster: 40S ribosomal protein S12; n=5;
Plasmodium|Rep: 40S ribosomal protein S12 - Plasmodium
falciparum (isolate 3D7)
Length = 141
Score = 60.1 bits (139), Expect = 3e-08
Identities = 30/77 (38%), Positives = 48/77 (62%), Gaps = 1/77 (1%)
Frame = +1
Query: 22 MADVEVEVPTNPILSGNNMDVNV-ALQEVLKTALIHGGLVHGLHEAAKALDKRQAVLCVL 198
M+DVE N ++ + NV A+Q+V+K A +H GL G+ E K+++ ++A +C L
Sbjct: 1 MSDVE-SADNNVVVEEKAVFDNVTAIQKVIKNAHVHDGLKIGIREVIKSIESQEAKVCFL 59
Query: 199 AENCDEAAYKKLVQALC 249
++ C E AYKKL+ LC
Sbjct: 60 SDVCSEPAYKKLITTLC 76
Score = 59.7 bits (138), Expect = 3e-08
Identities = 28/52 (53%), Positives = 35/52 (67%), Gaps = 1/52 (1%)
Frame = +3
Query: 261 IPLVKVDNNKK-LGEWAGLCKIDKDGKARKIVGCSCVVIKDFGEETPALDVL 413
IPL V N+ K LG WAGL K+D +G ARKI+G S V + DFGE++ D L
Sbjct: 81 IPLFMVQNDSKDLGHWAGLFKLDNEGNARKIIGASSVAVVDFGEDSAEKDFL 132
>UniRef50_Q22W26 Cluster: 40S ribosomal protein S12; n=1;
Tetrahymena thermophila SB210|Rep: 40S ribosomal protein
S12 - Tetrahymena thermophila SB210
Length = 126
Score = 55.2 bits (127), Expect = 7e-07
Identities = 24/70 (34%), Positives = 44/70 (62%), Gaps = 2/70 (2%)
Frame = +1
Query: 61 LSGNNMDVNVALQEVLKTALIHGGLVHGLHEAAKALDKRQAVLCVLAENCDEAAYKKLVQ 240
++ N +N L +V+K++ + GLHE + ++ +QA+ +AE+CD+ Y KLV+
Sbjct: 1 MADQNQQLNEVLAKVIKSSNCQDAISKGLHEVLRTIEAKQALFVCVAEDCDQGNYVKLVK 60
Query: 241 ALC--NDIRF 264
ALC N+I++
Sbjct: 61 ALCAKNEIKY 70
Score = 33.1 bits (72), Expect = 3.4
Identities = 14/47 (29%), Positives = 25/47 (53%)
Frame = +3
Query: 252 RHQIPLVKVDNNKKLGEWAGLCKIDKDGKARKIVGCSCVVIKDFGEE 392
+++I V V LGE+ G + G+ +K+ GCS + I+ + E
Sbjct: 65 KNEIKYVSVPKRASLGEYLGHFTANAKGEIKKVKGCSSLAIRKYAPE 111
>UniRef50_A7AM93 Cluster: 40S ribosomal protein S12, putative; n=1;
Babesia bovis|Rep: 40S ribosomal protein S12, putative -
Babesia bovis
Length = 167
Score = 52.8 bits (121), Expect = 4e-06
Identities = 24/62 (38%), Positives = 42/62 (67%), Gaps = 2/62 (3%)
Frame = +3
Query: 249 QRHQIPLVKVD-NNKKLGEWAGLCKIDKDGKARKIVGCSCVVI-KDFGEETPALDVLKDY 422
+ H +P ++ + +++K+GEWAGLCK D +G ARKIVG + V I +F E++ + + +
Sbjct: 103 KEHGVPCIETEFDSEKIGEWAGLCKYDIEGVARKIVGATSVAITNNFDEKSESAEEMISL 162
Query: 423 LK 428
+K
Sbjct: 163 IK 164
Score = 50.8 bits (116), Expect = 2e-05
Identities = 21/54 (38%), Positives = 35/54 (64%)
Frame = +1
Query: 94 LQEVLKTALIHGGLVHGLHEAAKALDKRQAVLCVLAENCDEAAYKKLVQALCND 255
LQ +L A+ +G L+ G+H+ KA++ + A CV++ E AY KL++ALC +
Sbjct: 51 LQRLLHLAMANGCLLRGIHQVTKAIEAKNARACVVSTQTSEEAYLKLIRALCKE 104
>UniRef50_A0EEB1 Cluster: 40S ribosomal protein S12; n=7; Paramecium
tetraurelia|Rep: 40S ribosomal protein S12 - Paramecium
tetraurelia
Length = 129
Score = 52.8 bits (121), Expect = 4e-06
Identities = 24/56 (42%), Positives = 36/56 (64%)
Frame = +1
Query: 94 LQEVLKTALIHGGLVHGLHEAAKALDKRQAVLCVLAENCDEAAYKKLVQALCNDIR 261
L+ V++T+L G L G+HE KA++ +QA VLA++C E YKKL+ AL +
Sbjct: 14 LKRVVQTSLHRGLLAKGVHEVCKAIESKQAKFVVLADDCTEDTYKKLIVALAKQFQ 69
Score = 36.7 bits (81), Expect = 0.28
Identities = 19/48 (39%), Positives = 25/48 (52%)
Frame = +3
Query: 249 QRHQIPLVKVDNNKKLGEWAGLCKIDKDGKARKIVGCSCVVIKDFGEE 392
++ QIP+ KV+ LGEW G+ K K K CS V +K F E
Sbjct: 66 KQFQIPVWKVEKGALLGEWIGISKFLTKTKKIKSRKCSSVALKHFAIE 113
>UniRef50_Q7R1B2 Cluster: GLP_306_61647_62024; n=1; Giardia lamblia
ATCC 50803|Rep: GLP_306_61647_62024 - Giardia lamblia
ATCC 50803
Length = 125
Score = 48.4 bits (110), Expect = 9e-05
Identities = 22/68 (32%), Positives = 38/68 (55%)
Frame = +1
Query: 94 LQEVLKTALIHGGLVHGLHEAAKALDKRQAVLCVLAENCDEAAYKKLVQALCNDIRFHWS 273
L+E K GLV G + K L++++A +C LA +C+E Y +V+ LC + + H
Sbjct: 10 LKETFKRIHNMDGLVTGHRQVFKYLERKRAKICFLASDCEEKQYADIVECLCKEYKVHLC 69
Query: 274 RLTTTKSL 297
+ T ++L
Sbjct: 70 KKFTRRTL 77
>UniRef50_A0C845 Cluster: Chromosome undetermined scaffold_157,
whole genome shotgun sequence; n=2; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_157,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 779
Score = 44.0 bits (99), Expect = 0.002
Identities = 27/71 (38%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Frame = +1
Query: 151 EAAKALDKRQAVLCVLAENCDEAAYKKLVQALCNDIRFH-WSRLTTTKSLENGLV-SARL 324
++AKA++ +QA VLA++C E YKKLV AL + W LENGL + L
Sbjct: 52 KSAKAIESKQAKFIVLADDCSEDTYKKLVIALAKQFQIPVWKVEKGVLYLENGLAFQSSL 111
Query: 325 TRMARQGKLSA 357
R R + +A
Sbjct: 112 LRQRRSNQENA 122
>UniRef50_UPI00004982F0 Cluster: 40S ribosomal protein S12; n=3;
Entamoeba histolytica HM-1:IMSS|Rep: 40S ribosomal
protein S12 - Entamoeba histolytica HM-1:IMSS
Length = 136
Score = 41.5 bits (93), Expect = 0.010
Identities = 15/54 (27%), Positives = 31/54 (57%)
Frame = +1
Query: 94 LQEVLKTALIHGGLVHGLHEAAKALDKRQAVLCVLAENCDEAAYKKLVQALCND 255
++ +L A L G+ + K ++ ++A+ C +AE+CD Y L++A+C +
Sbjct: 26 IKAILYQARAQNALTKGIRQCLKVIEAKKALYCFIAEDCDNDKYTGLLKAICKE 79
Score = 38.3 bits (85), Expect = 0.091
Identities = 16/38 (42%), Positives = 23/38 (60%)
Frame = +3
Query: 261 IPLVKVDNNKKLGEWAGLCKIDKDGKARKIVGCSCVVI 374
+ +V V +LGEW CKI +DG A +I CSC ++
Sbjct: 82 VKIVMVPQKIQLGEWTNQCKI-RDGAAVRIAKCSCAIV 118
>UniRef50_Q017M6 Cluster: Homology to unknown gene; n=1;
Ostreococcus tauri|Rep: Homology to unknown gene -
Ostreococcus tauri
Length = 473
Score = 37.5 bits (83), Expect = 0.16
Identities = 20/49 (40%), Positives = 29/49 (59%)
Frame = -1
Query: 440 LARRLEVVLEHIQRWSFLAEIFDDNTGAADNFPCLAILVNLAETSPFSK 294
+AR L+ VL+H +R FL E+ D + A N A V LA+TSP ++
Sbjct: 295 VARVLQEVLKHAERRGFLTEVADHDARALHNLTRGAFGVELAQTSPLTE 343
>UniRef50_Q3LWI8 Cluster: Ribosomal protein S12; n=1; Bigelowiella
natans|Rep: Ribosomal protein S12 - Bigelowiella natans
(Pedinomonas minutissima) (Chlorarachnion sp.(strain
CCMP 621))
Length = 110
Score = 36.7 bits (81), Expect = 0.28
Identities = 17/58 (29%), Positives = 31/58 (53%)
Frame = +1
Query: 76 MDVNVALQEVLKTALIHGGLVHGLHEAAKALDKRQAVLCVLAENCDEAAYKKLVQALC 249
M + L+ ++K A +V G+ E K + + C+LA+NC++ YK ++ LC
Sbjct: 1 MIIEKFLKILIKEATKKNLIVKGIKETIKFIIRGYGYACILAKNCNKKQYKIAIKTLC 58
>UniRef50_Q3SAE1 Cluster: Ribosomal protein L7A; n=2; Naegleria
gruberi|Rep: Ribosomal protein L7A - Naegleria gruberi
Length = 258
Score = 35.1 bits (77), Expect = 0.85
Identities = 14/42 (33%), Positives = 26/42 (61%)
Frame = +1
Query: 133 LVHGLHEAAKALDKRQAVLCVLAENCDEAAYKKLVQALCNDI 258
L+HG++E KA++++QA L V+A + + + ALC +
Sbjct: 135 LIHGINEVVKAVERKQASLVVIAHDVEPIELVLFLPALCKKL 176
>UniRef50_P24522 Cluster: Growth arrest and DNA-damage-inducible
protein GADD45 alpha; n=72; Euteleostomi|Rep: Growth
arrest and DNA-damage-inducible protein GADD45 alpha -
Homo sapiens (Human)
Length = 165
Score = 35.1 bits (77), Expect = 0.85
Identities = 28/69 (40%), Positives = 37/69 (53%), Gaps = 10/69 (14%)
Frame = +1
Query: 82 VNVALQEVLKTALIHGGLVHGLHEAAKAL--DKRQAVLCVLAENCDE------AAYKKLV 237
V AL+EVL AL + G++EAAK L D VLC+LA + D+ + L+
Sbjct: 19 VGDALEEVLSKALSQRTITVGVYEAAKLLNVDPDNVVLCLLAADEDDDRDVALQIHFTLI 78
Query: 238 QALC--NDI 258
QA C NDI
Sbjct: 79 QAFCCENDI 87
>UniRef50_Q1X873 Cluster: Fanconi anemia B; n=3; Danio rerio|Rep:
Fanconi anemia B - Danio rerio (Zebrafish) (Brachydanio
rerio)
Length = 807
Score = 34.3 bits (75), Expect = 1.5
Identities = 16/40 (40%), Positives = 25/40 (62%), Gaps = 2/40 (5%)
Frame = +1
Query: 154 AAKALDKRQAVLCVLAENCDE--AAYKKLVQALCNDIRFH 267
AA KRQ V CVL C + +A+K ++ ++CND++ H
Sbjct: 70 AALDQQKRQKVPCVLLRLCKKRASAFKYMLYSICNDLKLH 109
>UniRef50_Q140Y0 Cluster: Hypothetical exported protein; n=3;
Burkholderia|Rep: Hypothetical exported protein -
Burkholderia xenovorans (strain LB400)
Length = 157
Score = 33.9 bits (74), Expect = 2.0
Identities = 28/107 (26%), Positives = 45/107 (42%)
Frame = +1
Query: 121 IHGGLVHGLHEAAKALDKRQAVLCVLAENCDEAAYKKLVQALCNDIRFHWSRLTTTKSLE 300
+ G L + A + LD+ + + + AA + L A IR L +T +
Sbjct: 36 VAGKLNNAAQVAGQKLDQAASYIGQQVDATKSAAQQNLESASAPSIRIDPGALASTA--Q 93
Query: 301 NGLVSARLTRMARQGKLSAAPVLSSKISARKLQRWMCSRTTSSRRAN 441
L SA A+ GK ++ S + + RKLQ W + SS A+
Sbjct: 94 ANLQSAASATNAQLGKAASLTGQSLESAGRKLQEWSAQSSASSANAS 140
>UniRef50_Q3W1D8 Cluster: Catalytic domain of components of various
dehydrogenase complexes; n=4; Actinomycetales|Rep:
Catalytic domain of components of various dehydrogenase
complexes - Frankia sp. EAN1pec
Length = 294
Score = 33.5 bits (73), Expect = 2.6
Identities = 21/61 (34%), Positives = 29/61 (47%)
Frame = +1
Query: 79 DVNVALQEVLKTALIHGGLVHGLHEAAKALDKRQAVLCVLAENCDEAAYKKLVQALCNDI 258
D N AL+ L+T + H VHG K LD R+ VL + N E + +QA +
Sbjct: 110 DANAALRGGLRTRVAHYPFVHGKLTLDKVLDGRRVVLGTVVPNLHEVGLAE-IQAHLERV 168
Query: 259 R 261
R
Sbjct: 169 R 169
>UniRef50_Q0FRC5 Cluster: Serine/threonine protein kinase; n=1;
Roseovarius sp. HTCC2601|Rep: Serine/threonine protein
kinase - Roseovarius sp. HTCC2601
Length = 445
Score = 33.1 bits (72), Expect = 3.4
Identities = 34/100 (34%), Positives = 48/100 (48%)
Frame = +1
Query: 94 LQEVLKTALIHGGLVHGLHEAAKALDKRQAVLCVLAENCDEAAYKKLVQALCNDIRFHWS 273
L++ L +L G V AAKA Q + VLAE DEA L +A+ + + +
Sbjct: 318 LEQHLTGSLGPMGRVIARRAAAKAATTEQLIAAVLAEFEDEAERMTLRRAIESALSQDAT 377
Query: 274 RLTTTKSLENGLVSARLTRMARQGKLSAAPVLSSKISARK 393
L T L + ++ RLT + + APVL K SARK
Sbjct: 378 GLGTAPGLPDAALT-RLTDLLKPHLGPIAPVLVRK-SARK 415
>UniRef50_Q8GZ45 Cluster: Probable threonyl-tRNA synthetase,
cytoplasmic; n=2; Arabidopsis thaliana|Rep: Probable
threonyl-tRNA synthetase, cytoplasmic - Arabidopsis
thaliana (Mouse-ear cress)
Length = 458
Score = 33.1 bits (72), Expect = 3.4
Identities = 17/52 (32%), Positives = 30/52 (57%)
Frame = +1
Query: 166 LDKRQAVLCVLAENCDEAAYKKLVQALCNDIRFHWSRLTTTKSLENGLVSAR 321
L RQA++C L+E+C ++Y K VQ N++ ++ + +SL + AR
Sbjct: 355 LSPRQAIVCSLSEDC--SSYAKQVQKQINEVGYYVDIDESDRSLRKKVADAR 404
>UniRef50_UPI0001555481 Cluster: PREDICTED: similar to structural
maintenance of chromosomes 1B; n=3; Mammalia|Rep:
PREDICTED: similar to structural maintenance of
chromosomes 1B - Ornithorhynchus anatinus
Length = 1329
Score = 32.7 bits (71), Expect = 4.5
Identities = 20/86 (23%), Positives = 36/86 (41%), Gaps = 4/86 (4%)
Frame = +1
Query: 133 LVHGLHEAAKALDKRQAVLCVLAENCDEAAYKKLVQALCNDIRF---HWSRLTTTKSLEN 303
L+HG H + + EN +E + +++ C++ RF H SR LE
Sbjct: 35 LIHGAHIGKPVSTTASVKVVYIEENGEEKTFSRIIHGDCSEFRFNDNHVSRSAYAAELEK 94
Query: 304 -GLVSARLTRMARQGKLSAAPVLSSK 378
G++S + QG + + + K
Sbjct: 95 IGIISKARNCLVFQGTVESIAMKKPK 120
>UniRef50_A2FQ73 Cluster: Putative uncharacterized protein; n=1;
Trichomonas vaginalis G3|Rep: Putative uncharacterized
protein - Trichomonas vaginalis G3
Length = 420
Score = 32.7 bits (71), Expect = 4.5
Identities = 27/113 (23%), Positives = 51/113 (45%), Gaps = 1/113 (0%)
Frame = +1
Query: 109 KTALIHGGLVHGLHEAAKALDKRQAVLCVLAENCDEAAYKKLVQALCNDIRFHWSRLTTT 288
KTA + G + AAKALD+ Q V+ ++ K Q+L N ++ + RL
Sbjct: 255 KTAALSGRIAILEQRAAKALDQSQGVISD-SQTAQFEMRKVFDQSLDNSMKSYKQRLDEV 313
Query: 289 KSLENGLVSARLTRM-ARQGKLSAAPVLSSKISARKLQRWMCSRTTSSRRANP 444
+ L L R ++ + +L+ A SK + +++ + ++T + P
Sbjct: 314 RGLITDLAQTRFNQIDDLRNRLATASEELSKAKHKNMKQMIETKTVARTSLRP 366
>UniRef50_Q6ZDB7 Cluster: Putative pentatricopeptide (PPR)
repeat-containing protein; n=2; Oryza sativa|Rep:
Putative pentatricopeptide (PPR) repeat-containing
protein - Oryza sativa subsp. japonica (Rice)
Length = 735
Score = 32.3 bits (70), Expect = 6.0
Identities = 20/77 (25%), Positives = 36/77 (46%), Gaps = 2/77 (2%)
Frame = +1
Query: 82 VNVALQEVLKTALIHGGLVHGLHEAAKALDKRQAVLCVLAENC--DEAAYKKLVQALCND 255
V + L+ L+TA + L+HGL A + + + A++C D Y +V LC
Sbjct: 131 VLMPLRGCLRTAFTYTALLHGLLGAGMVREAMAVFVGMRADSCAPDTHVYATMVHGLCEA 190
Query: 256 IRFHWSRLTTTKSLENG 306
R + + +++ NG
Sbjct: 191 GRTEEAEVLLEEAMSNG 207
>UniRef50_UPI00015609DE Cluster: PREDICTED: similar to family with
sequence similarity 48, member A; n=2; Equus
caballus|Rep: PREDICTED: similar to family with sequence
similarity 48, member A - Equus caballus
Length = 953
Score = 31.9 bits (69), Expect = 7.9
Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 2/62 (3%)
Frame = -2
Query: 253 RCTEPEQVSCMRLHHSSQPKHIVLLASCQEL*RLREDRAQDHHGLKLSLAP--LAVLHSR 80
RC+ P L H P + +L SCQ +E A + + LK+S A + V R
Sbjct: 241 RCSSPALSRQQELSHGPPPPELTVLTSCQP---SKESNAGEQYDLKISGAGNYVDVWEQR 297
Query: 79 PC 74
PC
Sbjct: 298 PC 299
>UniRef50_Q64TS9 Cluster: Putative uncharacterized protein; n=2;
Bacteroides fragilis|Rep: Putative uncharacterized
protein - Bacteroides fragilis
Length = 1399
Score = 31.9 bits (69), Expect = 7.9
Identities = 35/118 (29%), Positives = 52/118 (44%), Gaps = 13/118 (11%)
Frame = +1
Query: 22 MADVEVEVPTNP-ILSGNNMDVNV------ALQEVLKTALIHGGLVHGLHEAAKALDKR- 177
+A E EV + P +L+ N + ALQ++ I G + AL++R
Sbjct: 759 IAQAEREVASTPALLAAKNRKLQQLNEELKALQQLGTIREIPDGFASQTDKVLSALNERH 818
Query: 178 QAVLCVLAENCD-----EAAYKKLVQALCNDIRFHWSRLTTTKSLENGLVSARLTRMA 336
+ L + EN + +A Y K V L DIRFH RL + LE RL ++A
Sbjct: 819 EKELLKIRENKERQQQTQAQYNKAV--LAEDIRFHTQRLGILEGLEKKTARTRLRQLA 874
>UniRef50_A5C1P4 Cluster: Putative uncharacterized protein; n=1;
Vitis vinifera|Rep: Putative uncharacterized protein -
Vitis vinifera (Grape)
Length = 545
Score = 31.9 bits (69), Expect = 7.9
Identities = 14/48 (29%), Positives = 24/48 (50%)
Frame = +1
Query: 130 GLVHGLHEAAKALDKRQAVLCVLAENCDEAAYKKLVQALCNDIRFHWS 273
G+V GLH +++ QA L V+A+ D + + LC I ++
Sbjct: 290 GVVDGLHHITYYIEQNQAQLAVIAQEVDPIEFAVWLSVLCQKIEVFYA 337
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 492,917,940
Number of Sequences: 1657284
Number of extensions: 9236053
Number of successful extensions: 27636
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 26825
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27624
length of database: 575,637,011
effective HSP length: 94
effective length of database: 419,852,315
effective search space used: 28130105105
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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