Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20531
(485 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC962.04 |rps1201|rps12-1, rps12|40S ribosomal protein S12|Sch... 81 1e-16
SPBC1685.02c |rps1202|rps12-2|40S ribosomal protein S12|Schizosa... 80 2e-16
SPBC106.13 |||conserved eukaryotic protein|Schizosaccharomyces p... 27 1.5
SPBC713.02c |ubp21|ubpD, ubp15|ubiquitin C-terminal hydrolase Ub... 25 4.6
SPAPJ696.01c |vps17||retromer complex subunit Vps17|Schizosaccha... 25 6.1
SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac... 25 8.0
SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3 |Sch... 25 8.0
SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon... 25 8.0
SPBC2G2.08 |ade9||C-1-tetrahydrofolatesynthase/methylenetetrahyd... 25 8.0
>SPCC962.04 |rps1201|rps12-1, rps12|40S ribosomal protein
S12|Schizosaccharomyces pombe|chr 3|||Manual
Length = 145
Score = 80.6 bits (190), Expect = 1e-16
Identities = 37/58 (63%), Positives = 46/58 (79%)
Frame = +1
Query: 76 MDVNVALQEVLKTALIHGGLVHGLHEAAKALDKRQAVLCVLAENCDEAAYKKLVQALC 249
+ V AL+EVLK AL+H GL G+ EA+KALD+RQA LCVL E+CD+ AY KLV+ALC
Sbjct: 27 VSVEDALKEVLKRALVHDGLARGIREASKALDRRQAHLCVLCESCDQEAYVKLVEALC 84
Score = 76.6 bits (180), Expect = 2e-15
Identities = 31/52 (59%), Positives = 41/52 (78%)
Frame = +3
Query: 258 QIPLVKVDNNKKLGEWAGLCKIDKDGKARKIVGCSCVVIKDFGEETPALDVL 413
+ PL+KV + K LGEWAGLC +D+DG ARK+VGCSCV + D+GE++ AL L
Sbjct: 88 ETPLIKVADPKVLGEWAGLCVLDRDGNARKVVGCSCVAVTDYGEDSAALQKL 139
>SPBC1685.02c |rps1202|rps12-2|40S ribosomal protein
S12|Schizosaccharomyces pombe|chr 2|||Manual
Length = 148
Score = 79.8 bits (188), Expect = 2e-16
Identities = 36/58 (62%), Positives = 46/58 (79%)
Frame = +1
Query: 76 MDVNVALQEVLKTALIHGGLVHGLHEAAKALDKRQAVLCVLAENCDEAAYKKLVQALC 249
+ V +L+EVLK AL+H GL G+ EA+KALD+RQA LCVL E+CD+ AY KLV+ALC
Sbjct: 30 LSVEDSLKEVLKRALVHDGLARGIREASKALDRRQAHLCVLCESCDQEAYVKLVEALC 87
Score = 78.2 bits (184), Expect = 6e-16
Identities = 33/52 (63%), Positives = 41/52 (78%)
Frame = +3
Query: 258 QIPLVKVDNNKKLGEWAGLCKIDKDGKARKIVGCSCVVIKDFGEETPALDVL 413
Q PLVKV + K LGEWAGLC +D+DG ARK+VGCSCV + D+GE++ AL L
Sbjct: 91 QTPLVKVADPKILGEWAGLCVLDRDGNARKVVGCSCVAVTDYGEDSVALQTL 142
>SPBC106.13 |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 404
Score = 27.1 bits (57), Expect = 1.5
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = -1
Query: 401 RWSFLAEIFDDNTGAADNFPCLAIL 327
RW +LA +F N A N P + +L
Sbjct: 257 RWEYLASLFTSNFTAVHNIPSVPLL 281
>SPBC713.02c |ubp21|ubpD, ubp15|ubiquitin C-terminal hydrolase
Ubp21|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1129
Score = 25.4 bits (53), Expect = 4.6
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +1
Query: 37 VEVPTNPILSGNNMDVNVALQEVLKTALIHGGLVHGLH 150
+E+ P LS D + + VL L+HGG +HG H
Sbjct: 445 LEIDLEPYLS-ETADKSESHVYVLHGVLVHGGDLHGGH 481
>SPAPJ696.01c |vps17||retromer complex subunit
Vps17|Schizosaccharomyces pombe|chr 1|||Manual
Length = 549
Score = 25.0 bits (52), Expect = 6.1
Identities = 10/28 (35%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
Frame = -3
Query: 369 QHRSSRQFSLPCHPCQSCRD-QPILQAF 289
+ ++ +QF LP PCQ+ + +PI+++F
Sbjct: 226 KRKALKQFPLPPDPCQALANLRPIVKSF 253
>SPCP31B10.07 |eft202||translation elongation factor 2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 842
Score = 24.6 bits (51), Expect = 8.0
Identities = 15/55 (27%), Positives = 24/55 (43%)
Frame = -2
Query: 226 CMRLHHSSQPKHIVLLASCQEL*RLREDRAQDHHGLKLSLAPLAVLHSRPCCYPT 62
C+ S +HIV A L +D +DH G+ L ++P V + P+
Sbjct: 517 CVLCTTSESGEHIVAGAGELHLEICLKDLQEDHAGIPLKISPPVVSYRESVSEPS 571
>SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1133
Score = 24.6 bits (51), Expect = 8.0
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = -2
Query: 133 DHHGLKLSLAPLAVLHSRPC 74
D GL ++ L+++HSRPC
Sbjct: 529 DEMGLGKTIEVLSLIHSRPC 548
>SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation
elongation factor 2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 24.6 bits (51), Expect = 8.0
Identities = 15/55 (27%), Positives = 24/55 (43%)
Frame = -2
Query: 226 CMRLHHSSQPKHIVLLASCQEL*RLREDRAQDHHGLKLSLAPLAVLHSRPCCYPT 62
C+ S +HIV A L +D +DH G+ L ++P V + P+
Sbjct: 517 CVLCTTSESGEHIVAGAGELHLEICLKDLQEDHAGIPLKISPPVVSYRESVSEPS 571
>SPBC2G2.08 |ade9||C-1-
tetrahydrofolatesynthase/methylenetetrahydrofolatedehydr
ogenase/methylenetetrahydrofolatecyclohydrolase/formylte
trahydrofolatesynthetase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 969
Score = 24.6 bits (51), Expect = 8.0
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = +1
Query: 343 GKLSAAPVLSSKISARKLQR 402
G S+A +L+ K+ ARKLQR
Sbjct: 28 GTSSSANILNGKLLARKLQR 47
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,008,821
Number of Sequences: 5004
Number of extensions: 38056
Number of successful extensions: 130
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 188065158
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -