Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20531
         (485 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC095424-1|AAH95424.1|  132|Homo sapiens ribosomal protein S12 p...   101   1e-21
BC071930-1|AAH71930.1|  132|Homo sapiens ribosomal protein S12 p...   101   1e-21
BC017321-1|AAH17321.1|  132|Homo sapiens ribosomal protein S12 p...   101   1e-21
AL137783-3|CAC12946.1|  132|Homo sapiens ribosomal protein S12 p...   101   1e-21
AB061840-1|BAB79478.1|  132|Homo sapiens ribosomal protein S12 p...   101   1e-21
X53505-1|CAA37582.1|  132|Homo sapiens ribosomal protein S12 pro...    98   1e-20
M60974-1|AAA35863.1|  165|Homo sapiens growth arrest and DNA-dam...    35   0.13 
L24498-1|AAA72045.1|  165|Homo sapiens gadd45 protein.                 35   0.13 
BC011757-1|AAH11757.1|  165|Homo sapiens growth arrest and DNA-d...    35   0.13 
AY135686-1|AAM88884.1|  165|Homo sapiens growth arrest and DNA-d...    35   0.13 
AL136120-2|CAI23494.1|  165|Homo sapiens growth arrest and DNA-d...    35   0.13 
BC034968-1|AAH34968.1|  538|Homo sapiens jub, ajuba homolog (Xen...    29   8.7  
BC007580-1|AAH07580.1|  538|Homo sapiens JUB protein protein.          29   8.7  
AY169959-1|AAO37641.1|  538|Homo sapiens ajuba protein.                29   8.7  

>BC095424-1|AAH95424.1|  132|Homo sapiens ribosomal protein S12
           protein.
          Length = 132

 Score =  101 bits (243), Expect = 1e-21
 Identities = 52/98 (53%), Positives = 65/98 (66%)
 Frame = +1

Query: 58  ILSGNNMDVNVALQEVLKTALIHGGLVHGLHEAAKALDKRQAVLCVLAENCDEAAYKKLV 237
           I +G  MDVN ALQEVLKTALIH GL  G+ EAAKALDKRQA LCVLA NCDE  Y KLV
Sbjct: 6   IAAGGVMDVNTALQEVLKTALIHDGLARGIREAAKALDKRQAHLCVLASNCDEPMYVKLV 65

Query: 238 QALCNDIRFHWSRLTTTKSLENGLVSARLTRMARQGKL 351
           +ALC + + +  ++   K L   +   ++ R  +  K+
Sbjct: 66  EALCAEHQINLIKVDDNKKLGEWVGLCKIDREGKPRKV 103



 Score =  100 bits (239), Expect = 3e-21
 Identities = 40/58 (68%), Positives = 52/58 (89%)
 Frame = +3

Query: 255 HQIPLVKVDNNKKLGEWAGLCKIDKDGKARKIVGCSCVVIKDFGEETPALDVLKDYLK 428
           HQI L+KVD+NKKLGEW GLCKID++GK RK+VGCSCVV+KD+G+E+ A DV+++Y K
Sbjct: 72  HQINLIKVDDNKKLGEWVGLCKIDREGKPRKVVGCSCVVVKDYGKESQAKDVIEEYFK 129


>BC071930-1|AAH71930.1|  132|Homo sapiens ribosomal protein S12
           protein.
          Length = 132

 Score =  101 bits (243), Expect = 1e-21
 Identities = 52/98 (53%), Positives = 65/98 (66%)
 Frame = +1

Query: 58  ILSGNNMDVNVALQEVLKTALIHGGLVHGLHEAAKALDKRQAVLCVLAENCDEAAYKKLV 237
           I +G  MDVN ALQEVLKTALIH GL  G+ EAAKALDKRQA LCVLA NCDE  Y KLV
Sbjct: 6   IAAGGVMDVNTALQEVLKTALIHDGLARGIREAAKALDKRQAHLCVLASNCDEPMYVKLV 65

Query: 238 QALCNDIRFHWSRLTTTKSLENGLVSARLTRMARQGKL 351
           +ALC + + +  ++   K L   +   ++ R  +  K+
Sbjct: 66  EALCAEHQINLIKVDDNKKLGEWVGLCKIDREGKPRKV 103



 Score =  100 bits (239), Expect = 3e-21
 Identities = 40/58 (68%), Positives = 52/58 (89%)
 Frame = +3

Query: 255 HQIPLVKVDNNKKLGEWAGLCKIDKDGKARKIVGCSCVVIKDFGEETPALDVLKDYLK 428
           HQI L+KVD+NKKLGEW GLCKID++GK RK+VGCSCVV+KD+G+E+ A DV+++Y K
Sbjct: 72  HQINLIKVDDNKKLGEWVGLCKIDREGKPRKVVGCSCVVVKDYGKESQAKDVIEEYFK 129


>BC017321-1|AAH17321.1|  132|Homo sapiens ribosomal protein S12
           protein.
          Length = 132

 Score =  101 bits (243), Expect = 1e-21
 Identities = 52/98 (53%), Positives = 65/98 (66%)
 Frame = +1

Query: 58  ILSGNNMDVNVALQEVLKTALIHGGLVHGLHEAAKALDKRQAVLCVLAENCDEAAYKKLV 237
           I +G  MDVN ALQEVLKTALIH GL  G+ EAAKALDKRQA LCVLA NCDE  Y KLV
Sbjct: 6   IAAGGVMDVNTALQEVLKTALIHDGLARGIREAAKALDKRQAHLCVLASNCDEPMYVKLV 65

Query: 238 QALCNDIRFHWSRLTTTKSLENGLVSARLTRMARQGKL 351
           +ALC + + +  ++   K L   +   ++ R  +  K+
Sbjct: 66  EALCAEHQINLIKVDDNKKLGEWVGLCKIDREGKPRKV 103



 Score =  100 bits (239), Expect = 3e-21
 Identities = 40/58 (68%), Positives = 52/58 (89%)
 Frame = +3

Query: 255 HQIPLVKVDNNKKLGEWAGLCKIDKDGKARKIVGCSCVVIKDFGEETPALDVLKDYLK 428
           HQI L+KVD+NKKLGEW GLCKID++GK RK+VGCSCVV+KD+G+E+ A DV+++Y K
Sbjct: 72  HQINLIKVDDNKKLGEWVGLCKIDREGKPRKVVGCSCVVVKDYGKESQAKDVIEEYFK 129


>AL137783-3|CAC12946.1|  132|Homo sapiens ribosomal protein S12
           protein.
          Length = 132

 Score =  101 bits (243), Expect = 1e-21
 Identities = 52/98 (53%), Positives = 65/98 (66%)
 Frame = +1

Query: 58  ILSGNNMDVNVALQEVLKTALIHGGLVHGLHEAAKALDKRQAVLCVLAENCDEAAYKKLV 237
           I +G  MDVN ALQEVLKTALIH GL  G+ EAAKALDKRQA LCVLA NCDE  Y KLV
Sbjct: 6   IAAGGVMDVNTALQEVLKTALIHDGLARGIREAAKALDKRQAHLCVLASNCDEPMYVKLV 65

Query: 238 QALCNDIRFHWSRLTTTKSLENGLVSARLTRMARQGKL 351
           +ALC + + +  ++   K L   +   ++ R  +  K+
Sbjct: 66  EALCAEHQINLIKVDDNKKLGEWVGLCKIDREGKPRKV 103



 Score =  100 bits (239), Expect = 3e-21
 Identities = 40/58 (68%), Positives = 52/58 (89%)
 Frame = +3

Query: 255 HQIPLVKVDNNKKLGEWAGLCKIDKDGKARKIVGCSCVVIKDFGEETPALDVLKDYLK 428
           HQI L+KVD+NKKLGEW GLCKID++GK RK+VGCSCVV+KD+G+E+ A DV+++Y K
Sbjct: 72  HQINLIKVDDNKKLGEWVGLCKIDREGKPRKVVGCSCVVVKDYGKESQAKDVIEEYFK 129


>AB061840-1|BAB79478.1|  132|Homo sapiens ribosomal protein S12
           protein.
          Length = 132

 Score =  101 bits (243), Expect = 1e-21
 Identities = 52/98 (53%), Positives = 65/98 (66%)
 Frame = +1

Query: 58  ILSGNNMDVNVALQEVLKTALIHGGLVHGLHEAAKALDKRQAVLCVLAENCDEAAYKKLV 237
           I +G  MDVN ALQEVLKTALIH GL  G+ EAAKALDKRQA LCVLA NCDE  Y KLV
Sbjct: 6   IAAGGVMDVNTALQEVLKTALIHDGLARGIREAAKALDKRQAHLCVLASNCDEPMYVKLV 65

Query: 238 QALCNDIRFHWSRLTTTKSLENGLVSARLTRMARQGKL 351
           +ALC + + +  ++   K L   +   ++ R  +  K+
Sbjct: 66  EALCAEHQINLIKVDDNKKLGEWVGLCKIDREGKPRKV 103



 Score =  100 bits (239), Expect = 3e-21
 Identities = 40/58 (68%), Positives = 52/58 (89%)
 Frame = +3

Query: 255 HQIPLVKVDNNKKLGEWAGLCKIDKDGKARKIVGCSCVVIKDFGEETPALDVLKDYLK 428
           HQI L+KVD+NKKLGEW GLCKID++GK RK+VGCSCVV+KD+G+E+ A DV+++Y K
Sbjct: 72  HQINLIKVDDNKKLGEWVGLCKIDREGKPRKVVGCSCVVVKDYGKESQAKDVIEEYFK 129


>X53505-1|CAA37582.1|  132|Homo sapiens ribosomal protein S12
           protein.
          Length = 132

 Score = 98.3 bits (234), Expect = 1e-20
 Identities = 39/58 (67%), Positives = 51/58 (87%)
 Frame = +3

Query: 255 HQIPLVKVDNNKKLGEWAGLCKIDKDGKARKIVGCSCVVIKDFGEETPALDVLKDYLK 428
           HQI L+KVD+NKKLGEW GLCKID++G  RK+VGCSCVV+KD+G+E+ A DV+++Y K
Sbjct: 72  HQINLIKVDDNKKLGEWVGLCKIDREGNPRKVVGCSCVVVKDYGKESQAKDVIEEYFK 129



 Score = 94.7 bits (225), Expect = 2e-19
 Identities = 50/98 (51%), Positives = 62/98 (63%)
 Frame = +1

Query: 58  ILSGNNMDVNVALQEVLKTALIHGGLVHGLHEAAKALDKRQAVLCVLAENCDEAAYKKLV 237
           I +G  MDVN ALQEVLKTALIH GL  G+ EAAKALDKRQA LCV A NCDE  Y KLV
Sbjct: 6   IAAGGVMDVNTALQEVLKTALIHDGLARGIREAAKALDKRQAHLCVQASNCDEPMYVKLV 65

Query: 238 QALCNDIRFHWSRLTTTKSLENGLVSARLTRMARQGKL 351
           +AL  + + +  ++   K L   +   ++ R     K+
Sbjct: 66  EALLAEHQINLIKVDDNKKLGEWVGLCKIDREGNPRKV 103


>M60974-1|AAA35863.1|  165|Homo sapiens growth arrest and
           DNA-damage-inducible protein protein.
          Length = 165

 Score = 35.1 bits (77), Expect = 0.13
 Identities = 28/69 (40%), Positives = 37/69 (53%), Gaps = 10/69 (14%)
 Frame = +1

Query: 82  VNVALQEVLKTALIHGGLVHGLHEAAKAL--DKRQAVLCVLAENCDE------AAYKKLV 237
           V  AL+EVL  AL    +  G++EAAK L  D    VLC+LA + D+        +  L+
Sbjct: 19  VGDALEEVLSKALSQRTITVGVYEAAKLLNVDPDNVVLCLLAADEDDDRDVALQIHFTLI 78

Query: 238 QALC--NDI 258
           QA C  NDI
Sbjct: 79  QAFCCENDI 87


>L24498-1|AAA72045.1|  165|Homo sapiens gadd45 protein.
          Length = 165

 Score = 35.1 bits (77), Expect = 0.13
 Identities = 28/69 (40%), Positives = 37/69 (53%), Gaps = 10/69 (14%)
 Frame = +1

Query: 82  VNVALQEVLKTALIHGGLVHGLHEAAKAL--DKRQAVLCVLAENCDE------AAYKKLV 237
           V  AL+EVL  AL    +  G++EAAK L  D    VLC+LA + D+        +  L+
Sbjct: 19  VGDALEEVLSKALSQRTITVGVYEAAKLLNVDPDNVVLCLLAADEDDDRDVALQIHFTLI 78

Query: 238 QALC--NDI 258
           QA C  NDI
Sbjct: 79  QAFCCENDI 87


>BC011757-1|AAH11757.1|  165|Homo sapiens growth arrest and
           DNA-damage-inducible, alpha protein.
          Length = 165

 Score = 35.1 bits (77), Expect = 0.13
 Identities = 28/69 (40%), Positives = 37/69 (53%), Gaps = 10/69 (14%)
 Frame = +1

Query: 82  VNVALQEVLKTALIHGGLVHGLHEAAKAL--DKRQAVLCVLAENCDE------AAYKKLV 237
           V  AL+EVL  AL    +  G++EAAK L  D    VLC+LA + D+        +  L+
Sbjct: 19  VGDALEEVLSKALSQRTITVGVYEAAKLLNVDPDNVVLCLLAADEDDDRDVALQIHFTLI 78

Query: 238 QALC--NDI 258
           QA C  NDI
Sbjct: 79  QAFCCENDI 87


>AY135686-1|AAM88884.1|  165|Homo sapiens growth arrest and
           DNA-damage-inducible, alpha protein.
          Length = 165

 Score = 35.1 bits (77), Expect = 0.13
 Identities = 28/69 (40%), Positives = 37/69 (53%), Gaps = 10/69 (14%)
 Frame = +1

Query: 82  VNVALQEVLKTALIHGGLVHGLHEAAKAL--DKRQAVLCVLAENCDE------AAYKKLV 237
           V  AL+EVL  AL    +  G++EAAK L  D    VLC+LA + D+        +  L+
Sbjct: 19  VGDALEEVLSKALSQRTITVGVYEAAKLLNVDPDNVVLCLLAADEDDDRDVALQIHFTLI 78

Query: 238 QALC--NDI 258
           QA C  NDI
Sbjct: 79  QAFCCENDI 87


>AL136120-2|CAI23494.1|  165|Homo sapiens growth arrest and
           DNA-damage-inducible, alpha protein.
          Length = 165

 Score = 35.1 bits (77), Expect = 0.13
 Identities = 28/69 (40%), Positives = 37/69 (53%), Gaps = 10/69 (14%)
 Frame = +1

Query: 82  VNVALQEVLKTALIHGGLVHGLHEAAKAL--DKRQAVLCVLAENCDE------AAYKKLV 237
           V  AL+EVL  AL    +  G++EAAK L  D    VLC+LA + D+        +  L+
Sbjct: 19  VGDALEEVLSKALSQRTITVGVYEAAKLLNVDPDNVVLCLLAADEDDDRDVALQIHFTLI 78

Query: 238 QALC--NDI 258
           QA C  NDI
Sbjct: 79  QAFCCENDI 87


>BC034968-1|AAH34968.1|  538|Homo sapiens jub, ajuba homolog
           (Xenopus laevis) protein.
          Length = 538

 Score = 29.1 bits (62), Expect = 8.7
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = -3

Query: 354 RQFSLPCHPCQSCRDQPILQAFCCCQP 274
           R +   C+ C+ CR Q   +  CCC P
Sbjct: 487 RDYHFECYHCEDCRMQLSDEEGCCCFP 513


>BC007580-1|AAH07580.1|  538|Homo sapiens JUB protein protein.
          Length = 538

 Score = 29.1 bits (62), Expect = 8.7
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = -3

Query: 354 RQFSLPCHPCQSCRDQPILQAFCCCQP 274
           R +   C+ C+ CR Q   +  CCC P
Sbjct: 487 RDYHFECYHCEDCRMQLSDEEGCCCFP 513


>AY169959-1|AAO37641.1|  538|Homo sapiens ajuba protein.
          Length = 538

 Score = 29.1 bits (62), Expect = 8.7
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = -3

Query: 354 RQFSLPCHPCQSCRDQPILQAFCCCQP 274
           R +   C+ C+ CR Q   +  CCC P
Sbjct: 487 RDYHFECYHCEDCRMQLSDEEGCCCFP 513


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 73,965,820
Number of Sequences: 237096
Number of extensions: 1499814
Number of successful extensions: 3581
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 3418
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3578
length of database: 76,859,062
effective HSP length: 84
effective length of database: 56,942,998
effective search space used: 4384610846
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)