Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20530
         (688 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC320.10 |srp72||signal recognition particle subunit Srp72|Sch...    29   0.48 
SPAP8A3.09c |paa1||protein phosphatase regulatory subunit Paa1|S...    28   1.1  
SPBC3B8.05 |||diphthamide biosynthesis protein |Schizosaccharomy...    26   5.9  
SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy...    25   7.8  
SPBC1271.02 |stt3||oligosaccharyltransferase subunit Stt3|Schizo...    25   7.8  
SPBC800.10c |||EPS15 repeat family actin cortical patch componen...    25   7.8  

>SPCC320.10 |srp72||signal recognition particle subunit
           Srp72|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 561

 Score = 29.5 bits (63), Expect = 0.48
 Identities = 13/35 (37%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
 Frame = +1

Query: 409 NSQRSLPEIPQPVGRHDSGDTASEIYATV-NLVAV 510
           N +  + E+ Q +G+ + GDT S+IY  V NL+ +
Sbjct: 3   NHEEEIEELAQRIGKIEVGDTKSDIYQKVLNLIDI 37


>SPAP8A3.09c |paa1||protein phosphatase regulatory subunit
           Paa1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 590

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 17/53 (32%), Positives = 27/53 (50%)
 Frame = +3

Query: 525 TASTSRDNPYEHAYAKLQNEAQNVTVEITPEQRSNDELPIDERDAAQNTAESV 683
           T+  S    Y  AY++ +N A  V++  +     +DE P+  R AA N A+ V
Sbjct: 142 TSRASSAGLYCAAYSQSENPAVKVSLRQSFSHLCHDEAPMVRRPAATNCAKFV 194


>SPBC3B8.05 |||diphthamide biosynthesis protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 436

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 14/54 (25%), Positives = 23/54 (42%), Gaps = 1/54 (1%)
 Frame = -2

Query: 603 QQLRFVLHSVIWHMRVHR-DYPDLSTPSLLSYYSHQIHRSIDFRCRVSAVVPAD 445
           Q   F +H  IWH+R+ +     L  P  L  +   +    +  C+V  +V  D
Sbjct: 71  QNYNFEIHKTIWHIRLRKAKRVALQLPEGLLMFGCILSDIFEQFCQVETIVMGD 124


>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2052

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 9/25 (36%), Positives = 17/25 (68%)
 Frame = -3

Query: 518 CLITATKFTVA*ISDAVSPLSCLPT 444
           C+IT+       I++++ PLSC+P+
Sbjct: 817 CIITSITHPKLDIAESLEPLSCIPS 841


>SPBC1271.02 |stt3||oligosaccharyltransferase subunit
           Stt3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 752

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 9/28 (32%), Positives = 19/28 (67%)
 Frame = +1

Query: 289 LVMYTIVEIFLSVGVLVTLITALSACVC 372
           +++Y+++  +   GV+V L+  L+ CVC
Sbjct: 395 IIIYSVLGTYFC-GVMVRLVLTLTPCVC 421


>SPBC800.10c |||EPS15 repeat family actin cortical patch component
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1116

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = +3

Query: 570 KLQNEAQNVTVEITPEQRSNDELPIDERDAAQNTAE 677
           KL  E   +  +++  ++SND+L    RD A N ++
Sbjct: 500 KLAAEVPKLESQLSQVKKSNDDLQKSSRDVAANLSD 535


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,734,989
Number of Sequences: 5004
Number of extensions: 55035
Number of successful extensions: 163
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 163
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)