Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20530
         (688 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0415 + 3160281-3160502,3162002-3162109,3163328-3163480,316...    31   0.86 
04_03_0363 - 14942195-14942203,14942421-14943417,14944178-14944278     29   2.6  
03_05_1060 - 30023407-30023553,30024274-30024390,30024958-300251...    29   3.5  
08_01_0847 + 8301435-8301668,8304531-8304641,8304883-8304939,830...    28   6.0  
09_06_0328 + 22365308-22365415,22365743-22366018,22366166-223664...    28   8.0  

>11_01_0415 +
           3160281-3160502,3162002-3162109,3163328-3163480,
           3163568-3163919,3175051-3175607
          Length = 463

 Score = 31.1 bits (67), Expect = 0.86
 Identities = 18/56 (32%), Positives = 24/56 (42%), Gaps = 1/56 (1%)
 Frame = +3

Query: 480 NLCYGEFGGCNKTVATASTSRDNPYEHAYAKLQNEAQ-NVTVEITPEQRSNDELPI 644
           N C G F   N T+     +   P E +YA L N  +  VTV++      ND   I
Sbjct: 308 NTCNGLFNNYNSTIIETVNTGYGPAEVSYAVLTNAVEGQVTVKLVRRDEHNDPTAI 363


>04_03_0363 - 14942195-14942203,14942421-14943417,14944178-14944278
          Length = 368

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 18/57 (31%), Positives = 32/57 (56%)
 Frame = +3

Query: 507 CNKTVATASTSRDNPYEHAYAKLQNEAQNVTVEITPEQRSNDELPIDERDAAQNTAE 677
           CN T + AS S++  YE+   ++ N   N+ + I  E  + ++  IDE +  +NT+E
Sbjct: 281 CNMT-SKASKSKET-YEYLLGEIDNLDSNLDLII--EDAAQNQASIDESNTVENTSE 333


>03_05_1060 -
           30023407-30023553,30024274-30024390,30024958-30025129,
           30026116-30026198,30026299-30026917,30027157-30027280,
           30027637-30027745,30028214-30028399,30028716-30028763,
           30028808-30028979,30029034-30029209
          Length = 650

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 18/58 (31%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
 Frame = -2

Query: 618 VLGLFQQL-RFVLHSVIWHMRVHRDYPDLSTPSLLSYYSHQIHRSIDFRCRVSAVVPA 448
           +LGLFQ L R V+  + + +     YP +S+ SLL+++   I   ++  CR     P+
Sbjct: 13  ILGLFQALPRLVVFDLDYTLWPFYWYP-ISSLSLLAFFRSSIEEKLESECRSKRESPS 69


>08_01_0847 +
           8301435-8301668,8304531-8304641,8304883-8304939,
           8305040-8305195
          Length = 185

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 20/55 (36%), Positives = 26/55 (47%), Gaps = 8/55 (14%)
 Frame = -1

Query: 580 FCNLAYACS*GLSRLVDAVATVLLQPPNSP*HR--------FQMPCLRCRACRPA 440
           FCN+ YACS   +  +D   T L + P+ P HR        F+  CL     RPA
Sbjct: 106 FCNVVYACSKMDTTQID--ETSLSESPSWPRHRSPLDWAGVFRYQCLSAHGPRPA 158


>09_06_0328 +
           22365308-22365415,22365743-22366018,22366166-22366417,
           22366542-22366939,22367028-22368021,22368199-22368409,
           22368515-22368749,22368874-22368996,22369190-22369310,
           22369416-22369625
          Length = 975

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 12/38 (31%), Positives = 23/38 (60%)
 Frame = +3

Query: 570 KLQNEAQNVTVEITPEQRSNDELPIDERDAAQNTAESV 683
           K+  +A N +  + P Q++ + LP DE+  A +TA+ +
Sbjct: 431 KVSTDAPNPSTSV-PNQKAPEALPEDEKKTAGSTADDI 467


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,148,458
Number of Sequences: 37544
Number of extensions: 334353
Number of successful extensions: 820
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 806
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 819
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1744894544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)