Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20530
         (688 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_18721| Best HMM Match : CUB (HMM E-Value=0)                         30   1.5  
SB_6676| Best HMM Match : UPAR_LY6 (HMM E-Value=0.02)                  28   6.2  
SB_44251| Best HMM Match : Transposase_5 (HMM E-Value=0.072)           28   8.1  

>SB_18721| Best HMM Match : CUB (HMM E-Value=0)
          Length = 288

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = +3

Query: 483 LCYGEFGGCNKTVATASTSRDNPY 554
           + Y EF GCNKT+ ++S   ++PY
Sbjct: 165 ITYSEFEGCNKTLTSSSGVIESPY 188


>SB_6676| Best HMM Match : UPAR_LY6 (HMM E-Value=0.02)
          Length = 174

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = +2

Query: 107 QTT*KCMCCGRLQCPT 154
           +T+ +C+CC  L+CPT
Sbjct: 27  RTSNRCLCCSALECPT 42


>SB_44251| Best HMM Match : Transposase_5 (HMM E-Value=0.072)
          Length = 221

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 15/63 (23%), Positives = 30/63 (47%)
 Frame = +3

Query: 276 KKKNSCYVYYSRNFFKCRGASHSYNSTISLCLWMQEF*SKGIDAE*SAEPTRNTPAGRQA 455
           K   S ++ + R  F CR    ++ S  ++  W+++F   G   +  ++ T  T +GR+ 
Sbjct: 19  KSYQSAHIQF-RKRFHCRNFPRNFPSKSTIVSWIKKFREHGTVVDLCSKATGGTYSGRKK 77

Query: 456 RQR 464
             R
Sbjct: 78  SAR 80


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,550,386
Number of Sequences: 59808
Number of extensions: 413469
Number of successful extensions: 1032
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 940
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1027
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1781448916
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)