Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20530
         (688 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC031647-1|AAH31647.1|  520|Homo sapiens calcium/calmodulin-depe...    31   3.8  
X78710-1|CAA55363.1|  753|Homo sapiens metal-regulatory transcri...    30   8.9  
BC014454-1|AAH14454.1|  753|Homo sapiens metal-regulatory transc...    30   8.9  
AL929472-12|CAH70087.1|  753|Homo sapiens metal-regulatory trans...    30   8.9  

>BC031647-1|AAH31647.1|  520|Homo sapiens
           calcium/calmodulin-dependent protein kinase kinase 1,
           alpha protein.
          Length = 520

 Score = 31.1 bits (67), Expect = 3.8
 Identities = 15/45 (33%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
 Frame = +3

Query: 543 DNPYE-HAYAKLQNEAQNVTVEITPEQRSNDELPIDERDAAQNTA 674
           D+P E + Y  LQN+AQN+ ++ T   + +  LP +++D+    A
Sbjct: 219 DDPAEDNLYLALQNQAQNIQLDSTNIAKPHSLLPSEQQDSGSTWA 263


>X78710-1|CAA55363.1|  753|Homo sapiens metal-regulatory
           transcription factor protein.
          Length = 753

 Score = 29.9 bits (64), Expect = 8.9
 Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
 Frame = +1

Query: 301 TIVEIFLSVGVLVTLITALSACVCGCKNS-NQKASTQNSQRSLPEIPQP 444
           ++ +I LSV V++        C C C++S  ++AS++    S P  P+P
Sbjct: 613 SVQQIGLSVPVIIIKQEEACQCQCACRDSAKERASSRRKGCSSPPPPEP 661


>BC014454-1|AAH14454.1|  753|Homo sapiens metal-regulatory
           transcription factor 1 protein.
          Length = 753

 Score = 29.9 bits (64), Expect = 8.9
 Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
 Frame = +1

Query: 301 TIVEIFLSVGVLVTLITALSACVCGCKNS-NQKASTQNSQRSLPEIPQP 444
           ++ +I LSV V++        C C C++S  ++AS++    S P  P+P
Sbjct: 613 SVQQIGLSVPVIIIKQEEACQCQCACRDSAKERASSRRKGCSSPPPPEP 661


>AL929472-12|CAH70087.1|  753|Homo sapiens metal-regulatory
           transcription factor 1 protein.
          Length = 753

 Score = 29.9 bits (64), Expect = 8.9
 Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
 Frame = +1

Query: 301 TIVEIFLSVGVLVTLITALSACVCGCKNS-NQKASTQNSQRSLPEIPQP 444
           ++ +I LSV V++        C C C++S  ++AS++    S P  P+P
Sbjct: 613 SVQQIGLSVPVIIIKQEEACQCQCACRDSAKERASSRRKGCSSPPPPEP 661


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 93,929,253
Number of Sequences: 237096
Number of extensions: 1870306
Number of successful extensions: 4170
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4029
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4167
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 7839245960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)