Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20530
         (688 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41542-5|AAO61441.1|  140|Caenorhabditis elegans Hypothetical pr...    28   7.2  
U41542-4|AAK39154.1|  437|Caenorhabditis elegans Hypothetical pr...    28   7.2  
U41542-3|AAK39156.1|  403|Caenorhabditis elegans Hypothetical pr...    28   7.2  
U00050-13|AAA50694.2|  298|Caenorhabditis elegans Hypothetical p...    28   7.2  
AF045641-2|AAC02578.2| 1370|Caenorhabditis elegans Hypothetical ...    27   9.5  

>U41542-5|AAO61441.1|  140|Caenorhabditis elegans Hypothetical
           protein C07A12.7c protein.
          Length = 140

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +3

Query: 528 ASTSRDNPYEHAYAKLQNEAQNVTVEITPEQRSNDEL 638
           A+ S   P EH  A+++   +N + + T EQ  ND+L
Sbjct: 104 AAVSNKLPTEHEAAEMEKWLENQSEKKTKEQEENDKL 140


>U41542-4|AAK39154.1|  437|Caenorhabditis elegans Hypothetical
           protein C07A12.7a protein.
          Length = 437

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +3

Query: 528 ASTSRDNPYEHAYAKLQNEAQNVTVEITPEQRSNDEL 638
           A+ S   P EH  A+++   +N + + T EQ  ND+L
Sbjct: 401 AAVSNKLPTEHEAAEMEKWLENQSEKKTKEQEENDKL 437


>U41542-3|AAK39156.1|  403|Caenorhabditis elegans Hypothetical
           protein C07A12.7b protein.
          Length = 403

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +3

Query: 528 ASTSRDNPYEHAYAKLQNEAQNVTVEITPEQRSNDEL 638
           A+ S   P EH  A+++   +N + + T EQ  ND+L
Sbjct: 367 AAVSNKLPTEHEAAEMEKWLENQSEKKTKEQEENDKL 403


>U00050-13|AAA50694.2|  298|Caenorhabditis elegans Hypothetical
           protein F09F7.1 protein.
          Length = 298

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 15/55 (27%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
 Frame = +1

Query: 307 VEIFLSVGVLVTLITALSACVCG---CKNSNQKASTQNSQRSLPEIPQPVGRHDS 462
           + + LSVG+ V L   ++ CVC    C N   +   ++ +R++  +   V R  S
Sbjct: 220 LSLLLSVGLAVGLTVFITCCVCAFRCCGNVKTRERRKSVERAMDNLRNSVIRRGS 274


>AF045641-2|AAC02578.2| 1370|Caenorhabditis elegans Hypothetical
            protein F53H1.4a protein.
          Length = 1370

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 18/69 (26%), Positives = 35/69 (50%)
 Frame = +1

Query: 274  KKKRTLVMYTIVEIFLSVGVLVTLITALSACVCGCKNSNQKASTQNSQRSLPEIPQPVGR 453
            K+++T+V+  ++E+F S+      +      + G   S + A  +N  RSLP+I Q +  
Sbjct: 1250 KRQKTVVVPEVLELFNSIERANPRLYKTLQQIPGQSRSTRNAQHEN--RSLPDIEQDLDV 1307

Query: 454  HDSGDTASE 480
            + S +   E
Sbjct: 1308 YTSAEQLHE 1316


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,290,626
Number of Sequences: 27780
Number of extensions: 317069
Number of successful extensions: 935
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 907
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 935
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1571291122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)