Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20530
         (688 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    23   2.1  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    23   3.6  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    23   3.6  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                22   6.3  

>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = -3

Query: 515 LITATKFTVA*ISDAVSPLSCLPTGW 438
           +  AT  TVA +  A SP+ C+   W
Sbjct: 1   MFRATIVTVACLLLAASPIDCVDANW 26


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +2

Query: 392 KRHRRRIVSGAYQKYPSRSAGTTAETRH 475
           K  RR++  G   K    SAGT++ T++
Sbjct: 769 KNIRRKVTMGDKSKKQGSSAGTSSITKY 796


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +2

Query: 392 KRHRRRIVSGAYQKYPSRSAGTTAETRH 475
           K  RR++  G   K    SAGT++ T++
Sbjct: 859 KNIRRKVTMGDKSKKQGSSAGTSSITKY 886


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = -3

Query: 548 IIPTCRRRRYCLITA 504
           + P+CRR+RY +  A
Sbjct: 97  VTPSCRRQRYNIAAA 111


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 183,073
Number of Sequences: 438
Number of extensions: 3904
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20952180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)