Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20530
         (688 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g03060.1 68415.m00259 MADS-box family protein                       29   2.9  
At3g24800.1 68416.m03112 PRT1 protein (PRT1) E3, N-end rule ubiq...    27   8.8  
At2g37050.1 68415.m04546 leucine-rich repeat family protein / pr...    27   8.8  

>At2g03060.1 68415.m00259 MADS-box family protein 
          Length = 337

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 11/49 (22%), Positives = 27/49 (55%)
 Frame = +2

Query: 35  N*VISMSKEVQTILKSELICSLCKQTT*KCMCCGRLQCPTF*TSQMEES 181
           N ++  + E+  +   +++  +   T    +CCG  +C +F +S++EE+
Sbjct: 26  NGILKKANELSILCDIDIVLLMFSPTGKAAICCGTRRCFSFESSELEEN 74


>At3g24800.1 68416.m03112 PRT1 protein (PRT1) E3, N-end rule
           ubiquitin ligase, contains two RING finger domain;
           identical to PRT1 [Arabidopsis thaliana] GI:3319884
          Length = 410

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
 Frame = +2

Query: 17  SLELKIN*VISMSKEVQTILKSELICSLCKQTT*K--CMCCGRLQCPTF*TSQMEES 181
           +L +  N ++  +K  + I K +L+CS CK+   +   + CG + C        EES
Sbjct: 167 ALNVHENELLKDNKVSKQISKDDLLCSACKELLVRPVVLNCGHVYCEGCVVDMAEES 223


>At2g37050.1 68415.m04546 leucine-rich repeat family protein /
           protein kinase family protein contains Pfam domains
           PF00560: Leucine Rich Repeat and PF00069: Protein kinase
           domain
          Length = 934

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 20/60 (33%), Positives = 27/60 (45%)
 Frame = +1

Query: 307 VEIFLSVGVLVTLITALSACVCGCKNSNQKASTQNSQRSLPEIPQPVGRHDSGDTASEIY 486
           V I  SVG  V LI  + +C+  CK S +      +   L   P P+ R  S  T SE +
Sbjct: 531 VIIGASVGAFVLLIATIISCIVMCK-SKKNNKLGKTSAELTNRPLPIQRVSS--TLSEAH 587


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,059,766
Number of Sequences: 28952
Number of extensions: 277708
Number of successful extensions: 672
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 656
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 671
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1457719448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)