Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20529
(541 letters)
Database: tribolium
336 sequences; 122,585 total letters
Searching.......................................................done
Score E
Sequences producing significant alignments: (bits) Value
EF117815-1|ABO38438.1| 535|Tribolium castaneum cryptochrome 2 p... 23 2.3
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ... 23 2.3
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ... 23 2.3
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ... 23 2.3
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ... 23 2.3
AM295015-1|CAL25730.1| 549|Tribolium castaneum ecdysone recepto... 23 2.3
EF222296-1|ABN79656.2| 403|Tribolium castaneum arginine vasopre... 22 4.0
U09586-3|AAC47272.1| 470|Tribolium castaneum integrase protein. 21 6.9
DQ855497-1|ABH88184.1| 127|Tribolium castaneum chemosensory pro... 21 9.2
AY362543-1|AAQ63455.1| 677|Tribolium castaneum chitin synthase ... 21 9.2
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ... 21 9.2
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ... 21 9.2
>EF117815-1|ABO38438.1| 535|Tribolium castaneum cryptochrome 2
protein.
Length = 535
Score = 22.6 bits (46), Expect = 2.3
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = -1
Query: 127 GRDHDRVHEDRRGLYLH 77
G+D VH RRGL LH
Sbjct: 14 GQDKHMVHWFRRGLRLH 30
>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
variant 2 protein.
Length = 1558
Score = 22.6 bits (46), Expect = 2.3
Identities = 8/28 (28%), Positives = 15/28 (53%)
Frame = +3
Query: 438 RGAIILAKLSVLPVRRGYWGNNIGSHTP 521
R + + +++ V G+W N I H+P
Sbjct: 250 RADLWIIPIAIFLVSLGWWENYISRHSP 277
>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
variant 1 protein.
Length = 1558
Score = 22.6 bits (46), Expect = 2.3
Identities = 8/28 (28%), Positives = 15/28 (53%)
Frame = +3
Query: 438 RGAIILAKLSVLPVRRGYWGNNIGSHTP 521
R + + +++ V G+W N I H+P
Sbjct: 250 RADLWIIPIAIFLVSLGWWENYISRHSP 277
>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
CHS1B protein.
Length = 1558
Score = 22.6 bits (46), Expect = 2.3
Identities = 8/28 (28%), Positives = 15/28 (53%)
Frame = +3
Query: 438 RGAIILAKLSVLPVRRGYWGNNIGSHTP 521
R + + +++ V G+W N I H+P
Sbjct: 250 RADLWIIPIAIFLVSLGWWENYISRHSP 277
>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
CHS1A protein.
Length = 1558
Score = 22.6 bits (46), Expect = 2.3
Identities = 8/28 (28%), Positives = 15/28 (53%)
Frame = +3
Query: 438 RGAIILAKLSVLPVRRGYWGNNIGSHTP 521
R + + +++ V G+W N I H+P
Sbjct: 250 RADLWIIPIAIFLVSLGWWENYISRHSP 277
>AM295015-1|CAL25730.1| 549|Tribolium castaneum ecdysone receptor
(isoform A) protein.
Length = 549
Score = 22.6 bits (46), Expect = 2.3
Identities = 10/35 (28%), Positives = 18/35 (51%)
Frame = -3
Query: 467 RQLSKDNSASNGSGDFLAALHTQTNMTVVVANGNK 363
++ K NS +NGS D + ++ + NG+K
Sbjct: 275 KEKDKPNSTTNGSPDVIKVEPELSDSEKTLCNGSK 309
>EF222296-1|ABN79656.2| 403|Tribolium castaneum arginine
vasopressin receptor protein.
Length = 403
Score = 21.8 bits (44), Expect = 4.0
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = -3
Query: 488 TSSNW*NRQLSKDNSASNGSGD 423
T+S+ R + NSASN SGD
Sbjct: 335 TASSKNYRSATGGNSASNSSGD 356
>U09586-3|AAC47272.1| 470|Tribolium castaneum integrase protein.
Length = 470
Score = 21.0 bits (42), Expect = 6.9
Identities = 10/26 (38%), Positives = 13/26 (50%)
Frame = -3
Query: 527 KGRCVASDVVTPVTSSNW*NRQLSKD 450
K +CV SD T S+ W N + D
Sbjct: 256 KPKCVLSDHGTQFISNTWQNSLRAAD 281
>DQ855497-1|ABH88184.1| 127|Tribolium castaneum chemosensory
protein 11 protein.
Length = 127
Score = 20.6 bits (41), Expect = 9.2
Identities = 8/17 (47%), Positives = 10/17 (58%)
Frame = +1
Query: 316 LYRNKHVPDSAHVSRHL 366
L + K PD A + RHL
Sbjct: 51 LEKGKCTPDGAELKRHL 67
>AY362543-1|AAQ63455.1| 677|Tribolium castaneum chitin synthase
protein.
Length = 677
Score = 20.6 bits (41), Expect = 9.2
Identities = 9/16 (56%), Positives = 10/16 (62%)
Frame = -2
Query: 213 VDFSFANKTAEFGDRN 166
VDF F N +A F D N
Sbjct: 82 VDFLFDNFSAAFQDHN 97
>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
protein.
Length = 1464
Score = 20.6 bits (41), Expect = 9.2
Identities = 9/16 (56%), Positives = 10/16 (62%)
Frame = -2
Query: 213 VDFSFANKTAEFGDRN 166
VDF F N +A F D N
Sbjct: 315 VDFLFDNFSAAFQDHN 330
>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
CHS2 protein.
Length = 1464
Score = 20.6 bits (41), Expect = 9.2
Identities = 9/16 (56%), Positives = 10/16 (62%)
Frame = -2
Query: 213 VDFSFANKTAEFGDRN 166
VDF F N +A F D N
Sbjct: 315 VDFLFDNFSAAFQDHN 330
Database: tribolium
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 122,585
Number of sequences in database: 336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 118,403
Number of Sequences: 336
Number of extensions: 2409
Number of successful extensions: 12
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 13201902
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -