Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20529
         (541 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC576.08c |rps2||40S ribosomal protein S2|Schizosaccharomyces ...   147   1e-36
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    28   1.0  
SPAPYUG7.03c |mid2||anillin homologue Mid2|Schizosaccharomyces p...    25   5.4  
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi...    25   5.4  
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   7.2  
SPBC18H10.11c |||conserved fungal protein|Schizosaccharomyces po...    25   7.2  
SPBC2D10.11c |||nucleosome assembly protein Nap2 |Schizosaccharo...    25   7.2  
SPAC1556.02c |sdh1||succinate dehydrogenase Sdh1|Schizosaccharom...    25   9.5  
SPBC1773.07c |sbp1|yrb1|Ran GTPase binding protein Sbp1|Schizosa...    25   9.5  
SPBC1A4.07c |||U3 snoRNP-associated protein Sof1|Schizosaccharom...    25   9.5  
SPAC17A5.15c |||glutamate-tRNA ligase |Schizosaccharomyces pombe...    25   9.5  

>SPCC576.08c |rps2||40S ribosomal protein S2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 253

 Score =  147 bits (356), Expect = 1e-36
 Identities = 67/106 (63%), Positives = 86/106 (81%), Gaps = 1/106 (0%)
 Frame = +3

Query: 204 KNRQTREHLLVFFTNQRFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDN 383
           K +   E  L     + ++I+D+FL P LNDEV+K++PVQKQTRAGQRTRFKAFV IGD+
Sbjct: 48  KIKSIEEIYLYSLPIKEYQIVDYFL-PRLNDEVMKVVPVQKQTRAGQRTRFKAFVVIGDS 106

Query: 384 NGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGNNIGS-HT 518
           +GH+GLG+KC+KEVATAIRGAII+ KLS++P+RRGYWG  +G  HT
Sbjct: 107 DGHVGLGIKCAKEVATAIRGAIIMGKLSIMPIRRGYWGTALGDPHT 152



 Score = 61.7 bits (143), Expect = 7e-11
 Identities = 25/37 (67%), Positives = 33/37 (89%)
 Frame = +1

Query: 145 KEDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKD 255
           ++++KEWVPVTKLGRLV+ GKI  +E IYL+SLPIK+
Sbjct: 28  RDEEKEWVPVTKLGRLVKAGKIKSIEEIYLYSLPIKE 64


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 27.9 bits (59), Expect = 1.0
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = -1

Query: 142 RAHDHGRDHDRVHEDRRGLYLHRVIRIRRENRHVHRLEQRPP 17
           ++HDHG  H + H DR      +  R  R++R     ++ PP
Sbjct: 720 QSHDHGHSHSKSH-DREKEKEKKKDREHRKHRETEEEDEGPP 760


>SPAPYUG7.03c |mid2||anillin homologue Mid2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 704

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 14/45 (31%), Positives = 21/45 (46%)
 Frame = -3

Query: 470 NRQLSKDNSASNGSGDFLAALHTQTNMTVVVANGNKCLETCALSG 336
           +R LS     + GSG     L    N+T+ +A+G     T  +SG
Sbjct: 373 SRNLSSSLQQTGGSGRLFVRLMEIRNLTIPLASGMTTRFTYTISG 417


>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 374

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 16/66 (24%), Positives = 31/66 (46%)
 Frame = -3

Query: 515 VASDVVTPVTSSNW*NRQLSKDNSASNGSGDFLAALHTQTNMTVVVANGNKCLETCALSG 336
           +++  VTP +SS+  + ++    +A   +    A+ HT  N   +V     C+    +  
Sbjct: 250 ISTVTVTPSSSSSSTSSEVPSSTAALALNAS-KASNHTSLNAGAIVGIVIGCVAFAVVMA 308

Query: 335 TCLFLY 318
            C+FLY
Sbjct: 309 LCIFLY 314


>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 536

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = -3

Query: 509 SDVVTPVTSSNW*NRQLSKDNSASN 435
           S+VVTP T++NW N   S  +S S+
Sbjct: 194 SEVVTPTTTNNW-NSSSSFTSSTSS 217


>SPBC18H10.11c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 432

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 17/58 (29%), Positives = 27/58 (46%)
 Frame = -3

Query: 329 LFLYRHDL*NLIIQGRAEEEINDLESLIGKENK*MLSSLSIFPSRTRRPSLVTGTHSF 156
           L +Y   L NL+ QG+A E +N ++ +          +  I  S  +RP   + T SF
Sbjct: 361 LQVYHEKLRNLVQQGQAAECLNTIKRMSHNGPFPTQQTFLIVLSLCKRPKFYSYTKSF 418


>SPBC2D10.11c |||nucleosome assembly protein Nap2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 379

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = +3

Query: 183 RPSCSRRKNRQTREHLLVFFTNQRFEIIDFFLGPSLNDE 299
           R    +++NR+T +  LV  T       +FF  P L+D+
Sbjct: 265 RVETKKQRNRKTNQTRLVRTTVPNDSFFNFFSPPQLDDD 303


>SPAC1556.02c |sdh1||succinate dehydrogenase
           Sdh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 641

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 21/77 (27%), Positives = 31/77 (40%), Gaps = 3/77 (3%)
 Frame = +3

Query: 258 EIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNG--HIGLGVKCSKEVA- 428
           E    F G  +  E + ++P       G  TRF   V   D NG   I  G+  + E A 
Sbjct: 378 ETAAIFAGVDVTKEPIPVLPTVHYNMGGIPTRFTGEVLTIDENGKDKIVPGLYAAGEAAC 437

Query: 429 TAIRGAIILAKLSVLPV 479
            ++ G   L   S+L +
Sbjct: 438 VSVHGGNRLGANSLLDI 454


>SPBC1773.07c |sbp1|yrb1|Ran GTPase binding protein
           Sbp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 215

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -3

Query: 434 GSGDFLAALHTQTNMTVVVANGNKCLETCA 345
           G+GD     H +T  T +V   +K L+ CA
Sbjct: 117 GTGDARLLKHKETGKTRLVMRRDKTLKVCA 146


>SPBC1A4.07c |||U3 snoRNP-associated protein
           Sof1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 436

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = +1

Query: 256 SRSLISSSARP*MMRF*RSCLYRNKHVPDSAHVSRH 363
           SR+ I S+     +++  S   R KH+P+   ++RH
Sbjct: 349 SRASIRSTREENRLKYLDSLRERYKHIPEIRRIARH 384


>SPAC17A5.15c |||glutamate-tRNA ligase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 716

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 19/51 (37%), Positives = 30/51 (58%)
 Frame = -2

Query: 309 SLEPHHSGTGRGRNQ*SRIFDW*RKQVNALEFVDFSFANKTAEFGDRNPLF 157
           +L PHH  TG  + +    +D+    V++LE V  + A +T E+ DRNPL+
Sbjct: 369 NLLPHHR-TGT-KYRAYPTYDFACPIVDSLEGV--THALRTTEYRDRNPLY 415


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,108,477
Number of Sequences: 5004
Number of extensions: 41819
Number of successful extensions: 111
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 221892220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)