Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20529
         (541 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0386 + 33555682-33556344,33557138-33557299                      147   6e-36
07_01_0756 + 5819367-5820038,5820847-5821005                          142   1e-34
03_04_0238 - 19219040-19219218,19220296-19220350,19221606-192216...    47   1e-05
07_03_0099 + 13387533-13387641,13387647-13387864,13388497-13388871     41   5e-04
11_04_0439 + 17749634-17749858,17750164-17750301,17750770-177509...    29   2.4  
08_01_0312 + 2764744-2767390,2767632-2767990                           27   7.2  

>03_06_0386 + 33555682-33556344,33557138-33557299
          Length = 274

 Score =  147 bits (356), Expect = 6e-36
 Identities = 69/82 (84%), Positives = 74/82 (90%), Gaps = 1/82 (1%)
 Frame = +3

Query: 276 LGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIIL 455
           L P L DEV+KI PVQKQTRAGQRTRFKAFV +GDNNGH+GLGVKC+KEVATAIRGAIIL
Sbjct: 81  LVPGLKDEVMKITPVQKQTRAGQRTRFKAFVVVGDNNGHVGLGVKCAKEVATAIRGAIIL 140

Query: 456 AKLSVLPVRRGYWGNNIGS-HT 518
           AKLSV+PVRRGYWGN IG  HT
Sbjct: 141 AKLSVVPVRRGYWGNKIGQPHT 162



 Score = 58.4 bits (135), Expect = 3e-09
 Identities = 22/37 (59%), Positives = 33/37 (89%)
 Frame = +1

Query: 145 KEDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKD 255
           ++++++WVPVTKLGRLV+EG+  K+E IYL SLP+K+
Sbjct: 38  RQEEEKWVPVTKLGRLVKEGRFSKIEEIYLHSLPVKE 74



 Score = 28.7 bits (61), Expect = 3.1
 Identities = 10/11 (90%), Positives = 11/11 (100%)
 Frame = +2

Query: 509 KPHTVPCKVTG 541
           +PHTVPCKVTG
Sbjct: 159 QPHTVPCKVTG 169


>07_01_0756 + 5819367-5820038,5820847-5821005
          Length = 276

 Score =  142 bits (345), Expect = 1e-34
 Identities = 67/82 (81%), Positives = 73/82 (89%), Gaps = 1/82 (1%)
 Frame = +3

Query: 276 LGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIIL 455
           L P L DEV+KI PVQKQTRAGQRTRFKAFV +GD +GH+GLGVKC+KEVATAIRGAIIL
Sbjct: 84  LVPGLKDEVMKITPVQKQTRAGQRTRFKAFVVVGDGDGHVGLGVKCAKEVATAIRGAIIL 143

Query: 456 AKLSVLPVRRGYWGNNIGS-HT 518
           AKLSV+PVRRGYWGN IG  HT
Sbjct: 144 AKLSVVPVRRGYWGNKIGKPHT 165



 Score = 58.4 bits (135), Expect = 3e-09
 Identities = 23/37 (62%), Positives = 33/37 (89%)
 Frame = +1

Query: 145 KEDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKD 255
           ++++++WVPVTKLGRLV+E KI K+E IYL SLP+K+
Sbjct: 41  RQEEEKWVPVTKLGRLVKENKIHKIEEIYLHSLPVKE 77



 Score = 30.3 bits (65), Expect = 1.0
 Identities = 11/11 (100%), Positives = 11/11 (100%)
 Frame = +2

Query: 509 KPHTVPCKVTG 541
           KPHTVPCKVTG
Sbjct: 162 KPHTVPCKVTG 172


>03_04_0238 -
           19219040-19219218,19220296-19220350,19221606-19221690,
           19222068-19222798
          Length = 349

 Score = 46.8 bits (106), Expect = 1e-05
 Identities = 21/63 (33%), Positives = 39/63 (61%)
 Frame = +3

Query: 291 NDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSV 470
           ++ V+++  V K  + G++  F+A V +GD  GH+G+GV  +KEV  AI  A +  + ++
Sbjct: 171 SERVVQVNRVTKVVKGGRQLSFRAIVVVGDMKGHVGVGVGKAKEVTEAITKAAMNGRRNL 230

Query: 471 LPV 479
           + V
Sbjct: 231 VTV 233


>07_03_0099 + 13387533-13387641,13387647-13387864,13388497-13388871
          Length = 233

 Score = 41.1 bits (92), Expect = 5e-04
 Identities = 20/32 (62%), Positives = 24/32 (75%)
 Frame = +3

Query: 363 FVAIGDNNGHIGLGVKCSKEVATAIRGAIILA 458
           FV +GD + HI LGVKC+K  AT + GAIILA
Sbjct: 2   FVVVGDGDSHIELGVKCAK--ATTMSGAIILA 31


>11_04_0439 +
           17749634-17749858,17750164-17750301,17750770-17750943,
           17751099-17751184,17751264-17751525,17751616-17751815,
           17753631-17754086,17754198-17754474,17754694-17754828,
           17754946-17755026,17756305-17756400,17756676-17756771,
           17756844-17756900,17756975-17757043,17757158-17757237,
           17758185-17758329,17758422-17758511,17758914-17758994,
           17759103-17759198,17759279-17759335,17759417-17759461,
           17759547-17759612,17760304-17760350,17762771-17762865,
           17763375-17763393,17763438-17763498,17763637-17763660
          Length = 1085

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = -3

Query: 425 DFLAALHTQTNMTVVVANGNKCLETCALSGTCLFLYRHD 309
           +F+A LHT  +M   V      +E C LS    F+ +HD
Sbjct: 655 EFIAYLHTYVDMLHKVDEIGDTMEDCYLSSPIKFVSKHD 693


>08_01_0312 + 2764744-2767390,2767632-2767990
          Length = 1001

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 20/42 (47%), Positives = 23/42 (54%)
 Frame = +1

Query: 343 SAHVSRHLLPLATTTVILVWV*SAARKSPLPFEALLSLLSCL 468
           + HV   LLPLAT T        +A  +PLP  ALLSL S L
Sbjct: 5   AVHVLLLLLPLATIT--------SASSAPLPLLALLSLRSSL 38


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,547,114
Number of Sequences: 37544
Number of extensions: 305516
Number of successful extensions: 928
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 904
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 928
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1198356516
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)