Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20529
(541 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_4413| Best HMM Match : No HMM Matches (HMM E-Value=.) 172 2e-43
SB_53557| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.46
SB_42238| Best HMM Match : Trypsin (HMM E-Value=0) 31 0.46
SB_53780| Best HMM Match : RVT_1 (HMM E-Value=0.0007) 29 1.8
SB_20635| Best HMM Match : rve (HMM E-Value=0.91) 29 2.4
SB_5251| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.4
SB_54962| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.4
SB_52533| Best HMM Match : rve (HMM E-Value=2) 29 2.4
SB_25521| Best HMM Match : NLPC_P60 (HMM E-Value=5.7) 29 2.4
SB_993| Best HMM Match : rve (HMM E-Value=2.7e-33) 29 2.4
SB_32523| Best HMM Match : 7tm_1 (HMM E-Value=1.4e-17) 28 4.2
SB_32282| Best HMM Match : Laminin_G_2 (HMM E-Value=0) 28 4.2
SB_30332| Best HMM Match : RVT_1 (HMM E-Value=2.7e-34) 27 7.4
SB_17882| Best HMM Match : ShTK (HMM E-Value=1e-05) 27 7.4
SB_6385| Best HMM Match : Peptidase_A16_N (HMM E-Value=0.00099) 27 9.8
>SB_4413| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 252
Score = 172 bits (418), Expect = 2e-43
Identities = 84/104 (80%), Positives = 92/104 (88%), Gaps = 2/104 (1%)
Frame = +3
Query: 213 QTREHLLVF-FTNQRFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNG 389
+T EH+ +F + FEIIDFFLG +L DEVLKIMPVQKQTRAGQRTRFKAFVAIGD+NG
Sbjct: 24 KTLEHIYLFSLPIKEFEIIDFFLGAALKDEVLKIMPVQKQTRAGQRTRFKAFVAIGDSNG 83
Query: 390 HIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGNNIGS-HT 518
H+GLGVKCSKEVATAIRGAIILAKLSV+PVRRGYWGN IG HT
Sbjct: 84 HVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGKPHT 127
Score = 52.8 bits (121), Expect = 2e-07
Identities = 24/31 (77%), Positives = 27/31 (87%)
Frame = +1
Query: 163 WVPVTKLGRLVREGKIDKLESIYLFSLPIKD 255
WVPVTKLGRLV++ KI LE IYLFSLPIK+
Sbjct: 8 WVPVTKLGRLVKDLKIKTLEHIYLFSLPIKE 38
Score = 30.3 bits (65), Expect = 1.1
Identities = 11/11 (100%), Positives = 11/11 (100%)
Frame = +2
Query: 509 KPHTVPCKVTG 541
KPHTVPCKVTG
Sbjct: 124 KPHTVPCKVTG 134
>SB_53557| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1049
Score = 31.5 bits (68), Expect = 0.46
Identities = 20/66 (30%), Positives = 32/66 (48%)
Frame = -3
Query: 464 QLSKDNSASNGSGDFLAALHTQTNMTVVVANGNKCLETCALSGTCLFLYRHDL*NLIIQG 285
++ + NS N D TNMT + + G CL + TC+ L DL NL+ +
Sbjct: 235 RILRRNSQPNDQADVARLQSLITNMTEIYSTGKVCL-NITRNNTCMSL-DPDLGNLMSRS 292
Query: 284 RAEEEI 267
R ++E+
Sbjct: 293 RNQDEL 298
>SB_42238| Best HMM Match : Trypsin (HMM E-Value=0)
Length = 657
Score = 31.5 bits (68), Expect = 0.46
Identities = 20/66 (30%), Positives = 32/66 (48%)
Frame = -3
Query: 464 QLSKDNSASNGSGDFLAALHTQTNMTVVVANGNKCLETCALSGTCLFLYRHDL*NLIIQG 285
++ + NS N D TNMT + + G CL + TC+ L DL NL+ +
Sbjct: 519 RILRRNSQPNDQADVARLQSLITNMTEIYSTGKVCL-NITRNNTCMSL-DPDLGNLMSRS 576
Query: 284 RAEEEI 267
R ++E+
Sbjct: 577 RNQDEL 582
>SB_53780| Best HMM Match : RVT_1 (HMM E-Value=0.0007)
Length = 280
Score = 29.5 bits (63), Expect = 1.8
Identities = 19/44 (43%), Positives = 23/44 (52%)
Frame = -3
Query: 437 NGSGDFLAALHTQTNMTVVVANGNKCLETCALSGTCLFLYRHDL 306
N G LA + N+ +V NG K + C LS T L LY HDL
Sbjct: 108 NAYGKSLAEFYNSNNL--IVLNGVK--QGCMLSPTLLNLYVHDL 147
>SB_20635| Best HMM Match : rve (HMM E-Value=0.91)
Length = 748
Score = 29.1 bits (62), Expect = 2.4
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = +3
Query: 291 NDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLG 404
N +LK++ + Q +A + F+ FVA + H G G
Sbjct: 155 NRSILKVLKIATQEKADMQREFRKFVAAYRSTPHTGTG 192
>SB_5251| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 945
Score = 29.1 bits (62), Expect = 2.4
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = +3
Query: 291 NDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLG 404
N +LK++ + Q +A + F+ FVA + H G G
Sbjct: 811 NRSILKVLKIATQEKADMQREFRKFVAAYRSTPHTGTG 848
>SB_54962| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2211
Score = 29.1 bits (62), Expect = 2.4
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = +3
Query: 291 NDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLG 404
N +LK++ + Q +A + F+ FVA + H G G
Sbjct: 2008 NRSILKVLKIATQEKADMQREFRKFVAAYRSTPHTGTG 2045
>SB_52533| Best HMM Match : rve (HMM E-Value=2)
Length = 212
Score = 29.1 bits (62), Expect = 2.4
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = +3
Query: 291 NDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLG 404
N +LK++ + Q +A + F+ FVA + H G G
Sbjct: 95 NRSILKVLKIATQEKADMQREFRKFVAAYRSTPHTGTG 132
>SB_25521| Best HMM Match : NLPC_P60 (HMM E-Value=5.7)
Length = 212
Score = 29.1 bits (62), Expect = 2.4
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = +3
Query: 291 NDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLG 404
N +LK++ + Q +A + F+ FVA + H G G
Sbjct: 9 NRSILKVLKIATQEKADMQREFRKFVAAYRSTPHTGTG 46
>SB_993| Best HMM Match : rve (HMM E-Value=2.7e-33)
Length = 735
Score = 29.1 bits (62), Expect = 2.4
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = +3
Query: 291 NDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLG 404
N +LK++ + Q +A + F+ FVA + H G G
Sbjct: 532 NRSILKVLKIATQEKADMQREFRKFVAAYRSTPHTGTG 569
>SB_32523| Best HMM Match : 7tm_1 (HMM E-Value=1.4e-17)
Length = 1130
Score = 28.3 bits (60), Expect = 4.2
Identities = 8/19 (42%), Positives = 12/19 (63%)
Frame = +2
Query: 341 TAHTFQGICCHWRQQRSYW 397
TA + ICCH +Q + +W
Sbjct: 486 TADQYDAICCHTQQSKKFW 504
>SB_32282| Best HMM Match : Laminin_G_2 (HMM E-Value=0)
Length = 897
Score = 28.3 bits (60), Expect = 4.2
Identities = 10/30 (33%), Positives = 18/30 (60%)
Frame = +3
Query: 339 GQRTRFKAFVAIGDNNGHIGLGVKCSKEVA 428
G++ + K F+A+G NGH+ C ++A
Sbjct: 356 GRKDKRKDFLALGLRNGHVEFRFSCGADIA 385
>SB_30332| Best HMM Match : RVT_1 (HMM E-Value=2.7e-34)
Length = 1683
Score = 27.5 bits (58), Expect = 7.4
Identities = 16/61 (26%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Frame = +3
Query: 318 VQKQTRAGQRTRFKAFVAIGDNNGHIGLGV--KCSKEVATAIRGAIILAKLSVLPVRRGY 491
+Q+ TR +RT +NN ++ LG+ C + TA+ G +L+ + ++ G
Sbjct: 1460 IQENTRTSRRTDISYRQLQANNNKNLELGIWRHCGPAILTALSG----RRLACVKIQAGP 1515
Query: 492 W 494
W
Sbjct: 1516 W 1516
>SB_17882| Best HMM Match : ShTK (HMM E-Value=1e-05)
Length = 387
Score = 27.5 bits (58), Expect = 7.4
Identities = 16/61 (26%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Frame = +3
Query: 318 VQKQTRAGQRTRFKAFVAIGDNNGHIGLGV--KCSKEVATAIRGAIILAKLSVLPVRRGY 491
+Q+ TR +RT +NN ++ LG+ C + TA+ G +L+ + ++ G
Sbjct: 274 IQENTRTSRRTDISYRQLQANNNKNLELGIWRHCGPAILTALSG----RRLACVKIQAGP 329
Query: 492 W 494
W
Sbjct: 330 W 330
>SB_6385| Best HMM Match : Peptidase_A16_N (HMM E-Value=0.00099)
Length = 437
Score = 27.1 bits (57), Expect = 9.8
Identities = 20/72 (27%), Positives = 35/72 (48%)
Frame = +3
Query: 162 VGSCHQTRPSCSRRKNRQTREHLLVFFTNQRFEIIDFFLGPSLNDEVLKIMPVQKQTRAG 341
+G+ + P S+RK ++ + + T +R I GP D+ + + +K+TRAG
Sbjct: 14 LGAHGEVGPCASKRKRKKVSKE--IDCTGKR---ISTTFGPIEPDKRMATVASKKKTRAG 68
Query: 342 QRTRFKAFVAIG 377
R F+A G
Sbjct: 69 HRAFVTRFMAEG 80
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,819,618
Number of Sequences: 59808
Number of extensions: 359196
Number of successful extensions: 1688
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1594
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1687
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1227799733
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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